Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06595 and DZA65_RS06600 are separated by 64 nucleotides DZA65_RS06600 and DZA65_RS06605 overlap by 1 nucleotides DZA65_RS06605 and DZA65_RS06610 are separated by 4 nucleotides DZA65_RS06610 and DZA65_RS06615 are separated by 163 nucleotides
DZA65_RS06595: DZA65_RS06595 - zinc ribbon-containing protein, at 1,371,524 to 1,372,006
_RS06595
DZA65_RS06600: DZA65_RS06600 - amino acid ABC transporter ATP-binding protein, at 1,372,071 to 1,372,796
_RS06600
DZA65_RS06605: DZA65_RS06605 - glutamate/aspartate ABC transporter permease GltK, at 1,372,796 to 1,373,470
_RS06605
DZA65_RS06610: DZA65_RS06610 - amino acid ABC transporter permease, at 1,373,475 to 1,374,215
_RS06610
DZA65_RS06615: DZA65_RS06615 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,374,379 to 1,375,302
_RS06615
Position (kb) 1372
1373
1374 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1371.863 kb on + strand, within DZA65_RS06595 at 1371.863 kb on + strand, within DZA65_RS06595 at 1371.863 kb on + strand, within DZA65_RS06595 at 1371.933 kb on - strand, within DZA65_RS06595 at 1371.933 kb on - strand, within DZA65_RS06595 at 1371.933 kb on - strand, within DZA65_RS06595 at 1372.073 kb on - strand at 1372.073 kb on - strand at 1372.100 kb on + strand at 1372.178 kb on + strand, within DZA65_RS06600 at 1372.270 kb on - strand, within DZA65_RS06600 at 1372.344 kb on + strand, within DZA65_RS06600 at 1372.345 kb on - strand, within DZA65_RS06600 at 1372.478 kb on + strand, within DZA65_RS06600 at 1372.478 kb on + strand, within DZA65_RS06600 at 1372.479 kb on - strand, within DZA65_RS06600 at 1372.479 kb on - strand, within DZA65_RS06600 at 1372.482 kb on + strand, within DZA65_RS06600 at 1372.482 kb on + strand, within DZA65_RS06600 at 1372.483 kb on - strand, within DZA65_RS06600 at 1372.483 kb on - strand, within DZA65_RS06600 at 1372.668 kb on + strand, within DZA65_RS06600 at 1372.668 kb on + strand, within DZA65_RS06600 at 1372.668 kb on + strand, within DZA65_RS06600 at 1372.707 kb on + strand, within DZA65_RS06600 at 1372.772 kb on + strand at 1372.772 kb on + strand at 1372.773 kb on - strand at 1372.818 kb on + strand at 1372.819 kb on - strand at 1372.858 kb on - strand at 1372.886 kb on + strand, within DZA65_RS06605 at 1372.886 kb on + strand, within DZA65_RS06605 at 1372.887 kb on - strand, within DZA65_RS06605 at 1372.887 kb on - strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.954 kb on - strand, within DZA65_RS06605 at 1372.954 kb on - strand at 1372.954 kb on - strand, within DZA65_RS06605 at 1372.954 kb on - strand, within DZA65_RS06605 at 1372.967 kb on - strand, within DZA65_RS06605 at 1372.967 kb on - strand, within DZA65_RS06605 at 1373.104 kb on + strand, within DZA65_RS06605 at 1373.104 kb on + strand, within DZA65_RS06605 at 1373.104 kb on + strand, within DZA65_RS06605 at 1373.105 kb on - strand, within DZA65_RS06605 at 1373.136 kb on + strand, within DZA65_RS06605 at 1373.140 kb on - strand, within DZA65_RS06605 at 1373.165 kb on + strand, within DZA65_RS06605 at 1373.170 kb on + strand, within DZA65_RS06605 at 1373.170 kb on + strand, within DZA65_RS06605 at 1373.171 kb on - strand, within DZA65_RS06605 at 1373.244 kb on + strand, within DZA65_RS06605 at 1373.244 kb on + strand, within DZA65_RS06605 at 1373.244 kb on + strand, within DZA65_RS06605 at 1373.245 kb on - strand, within DZA65_RS06605 at 1373.245 kb on - strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.296 kb on - strand, within DZA65_RS06605 at 1373.296 kb on - strand, within DZA65_RS06605 at 1373.423 kb on + strand at 1373.423 kb on + strand at 1373.423 kb on + strand at 1373.424 kb on - strand at 1373.424 kb on - strand at 1373.424 kb on - strand at 1373.424 kb on - strand at 1373.428 kb on - strand at 1373.428 kb on - strand at 1373.466 kb on + strand at 1373.466 kb on + strand at 1373.466 kb on + strand at 1373.466 kb on + strand at 1373.473 kb on - strand at 1373.473 kb on - strand at 1373.473 kb on - strand at 1373.477 kb on - strand at 1373.510 kb on + strand at 1373.510 kb on + strand at 1373.510 kb on + strand at 1373.510 kb on + strand at 1373.511 kb on - strand at 1373.511 kb on - strand at 1373.511 kb on - strand at 1373.511 kb on - strand at 1373.560 kb on + strand, within DZA65_RS06610 at 1373.560 kb on + strand, within DZA65_RS06610 at 1373.560 kb on + strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.590 kb on + strand, within DZA65_RS06610 at 1373.591 kb on - strand, within DZA65_RS06610 at 1373.605 kb on + strand, within DZA65_RS06610 at 1373.743 kb on + strand, within DZA65_RS06610 at 1373.743 kb on + strand, within DZA65_RS06610 at 1373.744 kb on - strand, within DZA65_RS06610 at 1373.744 kb on - strand, within DZA65_RS06610 at 1373.744 kb on - strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.750 kb on - strand, within DZA65_RS06610 at 1373.750 kb on - strand, within DZA65_RS06610 at 1373.816 kb on + strand, within DZA65_RS06610 at 1373.816 kb on + strand, within DZA65_RS06610 at 1373.816 kb on + strand, within DZA65_RS06610 at 1373.817 kb on - strand, within DZA65_RS06610 at 1373.817 kb on - strand, within DZA65_RS06610 at 1373.858 kb on + strand, within DZA65_RS06610 at 1373.858 kb on + strand, within DZA65_RS06610 at 1373.858 kb on + strand at 1373.859 kb on - strand, within DZA65_RS06610 at 1373.943 kb on + strand, within DZA65_RS06610 at 1373.944 kb on - strand, within DZA65_RS06610 at 1373.962 kb on + strand, within DZA65_RS06610 at 1373.962 kb on + strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1374.013 kb on + strand, within DZA65_RS06610 at 1374.013 kb on + strand, within DZA65_RS06610 at 1374.013 kb on + strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.118 kb on - strand, within DZA65_RS06610 at 1374.140 kb on + strand, within DZA65_RS06610 at 1374.141 kb on - strand, within DZA65_RS06610 at 1374.154 kb on + strand at 1374.154 kb on + strand at 1374.154 kb on + strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.161 kb on + strand at 1374.161 kb on + strand at 1374.162 kb on - strand at 1374.162 kb on - strand at 1374.207 kb on + strand at 1374.207 kb on + strand at 1374.207 kb on + strand at 1374.208 kb on - strand at 1374.215 kb on + strand at 1374.349 kb on + strand at 1374.349 kb on + strand at 1374.350 kb on - strand at 1374.359 kb on + strand at 1374.359 kb on + strand at 1374.360 kb on - strand at 1374.360 kb on - strand at 1374.369 kb on - strand at 1374.369 kb on - strand at 1374.371 kb on + strand at 1374.372 kb on - strand at 1374.372 kb on - strand at 1374.390 kb on + strand at 1374.391 kb on - strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,371,863 + DZA65_RS06595 0.70 +1.4 1,371,863 + DZA65_RS06595 0.70 +0.6 1,371,863 + DZA65_RS06595 0.70 +0.0 1,371,933 - DZA65_RS06595 0.85 -0.6 1,371,933 - DZA65_RS06595 0.85 -0.5 1,371,933 - DZA65_RS06595 0.85 +0.1 1,372,073 - +0.4 1,372,073 - +0.8 1,372,100 + -0.8 1,372,178 + DZA65_RS06600 0.15 -0.6 1,372,270 - DZA65_RS06600 0.27 +1.1 1,372,344 + DZA65_RS06600 0.38 +0.4 1,372,345 - DZA65_RS06600 0.38 -0.6 1,372,478 + DZA65_RS06600 0.56 -0.1 1,372,478 + DZA65_RS06600 0.56 -0.0 1,372,479 - DZA65_RS06600 0.56 -1.0 1,372,479 - DZA65_RS06600 0.56 -0.5 1,372,482 + DZA65_RS06600 0.57 -0.0 1,372,482 + DZA65_RS06600 0.57 -0.0 1,372,483 - DZA65_RS06600 0.57 +0.1 1,372,483 - DZA65_RS06600 0.57 +0.1 1,372,668 + DZA65_RS06600 0.82 -2.0 1,372,668 + DZA65_RS06600 0.82 +0.4 1,372,668 + DZA65_RS06600 0.82 -0.0 1,372,707 + DZA65_RS06600 0.88 -0.3 1,372,772 + -0.5 1,372,772 + -0.1 1,372,773 - -1.2 1,372,818 + -0.1 1,372,819 - -0.8 1,372,858 - +0.2 1,372,886 + DZA65_RS06605 0.13 -1.4 1,372,886 + DZA65_RS06605 0.13 +1.2 1,372,887 - DZA65_RS06605 0.13 +0.1 1,372,887 - DZA65_RS06605 0.13 -0.6 1,372,953 + DZA65_RS06605 0.23 -0.7 1,372,953 + DZA65_RS06605 0.23 -0.4 1,372,953 + DZA65_RS06605 0.23 -1.0 1,372,953 + DZA65_RS06605 0.23 +0.4 1,372,953 + DZA65_RS06605 0.23 +0.4 1,372,953 + DZA65_RS06605 0.23 -0.1 1,372,954 - DZA65_RS06605 0.23 +0.1 1,372,954 - +1.6 1,372,954 - DZA65_RS06605 0.23 +0.4 1,372,954 - DZA65_RS06605 0.23 +0.8 1,372,967 - DZA65_RS06605 0.25 -2.1 1,372,967 - DZA65_RS06605 0.25 -0.1 1,373,104 + DZA65_RS06605 0.46 +0.6 1,373,104 + DZA65_RS06605 0.46 +0.2 1,373,104 + DZA65_RS06605 0.46 -0.8 1,373,105 - DZA65_RS06605 0.46 +0.1 1,373,136 + DZA65_RS06605 0.50 -0.0 1,373,140 - DZA65_RS06605 0.51 -0.0 1,373,165 + DZA65_RS06605 0.55 +0.1 1,373,170 + DZA65_RS06605 0.55 -0.8 1,373,170 + DZA65_RS06605 0.55 -1.8 1,373,171 - DZA65_RS06605 0.56 -0.2 1,373,244 + DZA65_RS06605 0.66 +0.0 1,373,244 + DZA65_RS06605 0.66 -0.5 1,373,244 + DZA65_RS06605 0.66 -1.0 1,373,245 - DZA65_RS06605 0.67 -0.0 1,373,245 - DZA65_RS06605 0.67 +1.0 1,373,295 + DZA65_RS06605 0.74 -0.5 1,373,295 + DZA65_RS06605 0.74 +0.4 1,373,295 + DZA65_RS06605 0.74 +0.6 1,373,295 + DZA65_RS06605 0.74 -1.4 1,373,296 - DZA65_RS06605 0.74 +0.2 1,373,296 - DZA65_RS06605 0.74 -0.9 1,373,423 + -0.6 1,373,423 + -0.8 1,373,423 + +0.1 1,373,424 - -1.3 1,373,424 - +0.3 1,373,424 - +0.4 1,373,424 - +1.0 1,373,428 - +0.4 1,373,428 - +0.2 1,373,466 + +0.6 1,373,466 + -0.7 1,373,466 + -0.8 1,373,466 + +0.4 1,373,473 - +0.5 1,373,473 - +0.4 1,373,473 - +0.6 1,373,477 - +1.0 1,373,510 + +0.3 1,373,510 + +1.0 1,373,510 + -0.5 1,373,510 + +0.2 1,373,511 - -0.3 1,373,511 - +0.0 1,373,511 - -0.3 1,373,511 - +0.4 1,373,560 + DZA65_RS06610 0.11 +0.6 1,373,560 + DZA65_RS06610 0.11 +0.0 1,373,560 + DZA65_RS06610 0.11 -0.4 1,373,561 - DZA65_RS06610 0.12 +0.7 1,373,561 - DZA65_RS06610 0.12 -0.1 1,373,561 - DZA65_RS06610 0.12 -0.9 1,373,561 - DZA65_RS06610 0.12 -0.0 1,373,561 - DZA65_RS06610 0.12 +0.1 1,373,590 + DZA65_RS06610 0.16 +0.5 1,373,591 - DZA65_RS06610 0.16 -0.8 1,373,605 + DZA65_RS06610 0.18 +0.9 1,373,743 + DZA65_RS06610 0.36 -0.2 1,373,743 + DZA65_RS06610 0.36 -0.1 1,373,744 - DZA65_RS06610 0.36 +0.2 1,373,744 - DZA65_RS06610 0.36 -0.6 1,373,744 - DZA65_RS06610 0.36 +0.6 1,373,749 + DZA65_RS06610 0.37 +0.6 1,373,749 + DZA65_RS06610 0.37 -0.2 1,373,749 + DZA65_RS06610 0.37 +1.0 1,373,749 + DZA65_RS06610 0.37 -1.4 1,373,750 - DZA65_RS06610 0.37 +1.2 1,373,750 - DZA65_RS06610 0.37 -0.1 1,373,816 + DZA65_RS06610 0.46 -0.1 1,373,816 + DZA65_RS06610 0.46 -1.0 1,373,816 + DZA65_RS06610 0.46 +0.2 1,373,817 - DZA65_RS06610 0.46 +0.4 1,373,817 - DZA65_RS06610 0.46 +0.2 1,373,858 + DZA65_RS06610 0.52 -1.4 1,373,858 + DZA65_RS06610 0.52 +0.9 1,373,858 + +0.4 1,373,859 - DZA65_RS06610 0.52 -0.1 1,373,943 + DZA65_RS06610 0.63 +0.1 1,373,944 - DZA65_RS06610 0.63 -0.4 1,373,962 + DZA65_RS06610 0.66 -0.6 1,373,962 + DZA65_RS06610 0.66 -0.3 1,373,963 - DZA65_RS06610 0.66 -1.6 1,373,963 - DZA65_RS06610 0.66 +0.2 1,373,963 - DZA65_RS06610 0.66 -0.8 1,373,963 - DZA65_RS06610 0.66 -0.0 1,374,013 + DZA65_RS06610 0.73 +1.1 1,374,013 + DZA65_RS06610 0.73 -0.1 1,374,013 + DZA65_RS06610 0.73 -0.6 1,374,014 - DZA65_RS06610 0.73 +0.1 1,374,014 - DZA65_RS06610 0.73 -0.3 1,374,014 - DZA65_RS06610 0.73 +0.1 1,374,014 - DZA65_RS06610 0.73 -0.9 1,374,014 - DZA65_RS06610 0.73 +0.1 1,374,118 - DZA65_RS06610 0.87 -2.0 1,374,140 + DZA65_RS06610 0.90 -0.6 1,374,141 - DZA65_RS06610 0.90 +1.1 1,374,154 + -0.0 1,374,154 + -0.6 1,374,154 + -2.2 1,374,155 - -0.2 1,374,155 - +0.2 1,374,155 - +0.4 1,374,155 - -0.6 1,374,155 - -0.6 1,374,155 - +0.8 1,374,161 + -0.2 1,374,161 + +1.7 1,374,162 - +0.4 1,374,162 - +1.2 1,374,207 + +2.0 1,374,207 + -1.4 1,374,207 + +0.4 1,374,208 - +0.5 1,374,215 + -0.6 1,374,349 + -2.0 1,374,349 + -1.4 1,374,350 - -0.4 1,374,359 + -0.6 1,374,359 + -0.3 1,374,360 - -0.5 1,374,360 - -0.4 1,374,369 - +0.0 1,374,369 - +0.4 1,374,371 + -0.1 1,374,372 - +0.2 1,374,372 - -0.6 1,374,390 + -1.2 1,374,391 - -0.5 1,374,437 + +0.5 1,374,437 + +0.7 1,374,437 + -0.0 1,374,437 + -2.0 1,374,437 + -0.9 1,374,437 + -1.1 1,374,437 + -0.6 1,374,437 + +0.0 1,374,437 + -0.1 1,374,437 + -1.4 1,374,437 + +0.1 1,374,438 - -1.0 1,374,438 - -0.1 1,374,438 - -0.6 1,374,438 - -0.6 1,374,438 - -0.5 1,374,438 - +0.4 1,374,438 - -0.0 1,374,438 - +0.3 1,374,438 - -1.1 1,374,438 - -1.8 1,374,438 - -0.4 1,374,438 - +0.3 1,374,438 - +0.4 1,374,438 - +1.0 1,374,438 - -0.3 1,374,438 - +0.1 1,374,438 - -1.8 1,374,438 - -1.2 1,374,438 - -0.1
Or see this region's nucleotide sequence