Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05250

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,079,417	+		DZA65_RS05245	0.28	-0.1
1,079,418	-		DZA65_RS05245	0.28	+0.2
1,079,418	-		DZA65_RS05245	0.28	+0.1
1,079,418	-		DZA65_RS05245	0.28	-2.1
1,079,551	-		DZA65_RS05245	0.41	-2.6
1,079,551	-		DZA65_RS05245	0.41	-3.2
1,079,551	-		DZA65_RS05245	0.41	+1.3
1,079,551	-		DZA65_RS05245	0.41	+1.0
1,079,562	-		DZA65_RS05245	0.42	-0.3
1,079,713	+		DZA65_RS05245	0.56	-0.5
1,079,713	+		DZA65_RS05245	0.56	-0.2
1,079,713	+		DZA65_RS05245	0.56	+0.3
1,079,713	+		DZA65_RS05245	0.56	-2.4
1,079,714	-		DZA65_RS05245	0.56	+0.4
1,079,714	-		DZA65_RS05245	0.56	-0.6
1,079,820	+		DZA65_RS05245	0.65	-2.4
1,079,945	+		DZA65_RS05245	0.77	+0.3
1,079,945	+		DZA65_RS05245	0.77	+0.2
1,079,946	-		DZA65_RS05245	0.77	-0.4
1,079,946	-		DZA65_RS05245	0.77	+0.2
1,079,946	-		DZA65_RS05245	0.77	-1.2
1,079,949	-		DZA65_RS05245	0.77	-0.3
1,080,028	-		DZA65_RS05245	0.85	+1.3
1,080,041	+		DZA65_RS05245	0.86	+0.5
1,080,099	+				+1.1
1,080,099	+				-0.6
1,080,099	+				-0.1
1,080,100	-				+0.4
1,080,100	-				-0.6
1,080,100	-				-0.4
1,080,100	-				+0.9
1,080,101	+				+0.4
1,080,102	-				-0.3
1,080,102	-				+1.4
1,080,102	-				+0.4
1,080,102	-				-0.6
1,080,102	-				-1.0
1,080,102	-				+0.4
1,080,135	+				+1.1
1,080,135	+				-0.8
1,080,152	+				-1.2
1,080,152	+				-0.6
1,080,163	+				-1.6
1,080,195	+				+0.8
1,080,196	-				-0.7
1,080,254	+				+0.4
1,080,254	+				-0.6
1,080,254	+				-0.0
1,080,254	+				-0.0
1,080,254	+				+0.0
1,080,255	-				+0.1
1,080,255	-				+0.7
1,080,259	+				-1.8
1,080,259	+				+0.6
1,080,260	-				-2.0
1,080,284	+				-1.0
1,080,285	-				-0.6
1,080,291	+				-0.4
1,080,292	-				-0.4
1,080,292	-				-0.0
1,080,301	+				-0.5
1,080,302	-				+0.4
1,080,353	+				+0.6
1,080,353	+				-1.2
1,080,353	+				-0.2
1,080,353	+				+0.8
1,080,353	+				-0.3
1,080,353	+				-0.3
1,080,354	-				+2.1
1,080,354	-				-1.3
1,080,354	-				-0.4
1,080,354	-				-0.0
1,080,354	-				-0.9
1,080,362	+				-1.8
1,080,407	+				-0.9
1,080,408	-				-0.1
1,080,529	+		DZA65_RS05250	0.24	-0.3
1,080,630	-		DZA65_RS05250	0.38	-0.9
1,080,631	+		DZA65_RS05250	0.38	+0.5
1,080,631	+		DZA65_RS05250	0.38	-0.1
1,080,631	+		DZA65_RS05250	0.38	-0.8
1,080,631	+		DZA65_RS05250	0.38	+1.0
1,080,631	+		DZA65_RS05250	0.38	-1.7
1,080,632	-		DZA65_RS05250	0.39	+0.1
1,080,632	-		DZA65_RS05250	0.39	-0.0
1,080,632	-		DZA65_RS05250	0.39	-0.2
1,080,632	-		DZA65_RS05250	0.39	-0.9
1,080,632	-		DZA65_RS05250	0.39	-0.8
1,080,632	-				+1.1
1,080,632	-		DZA65_RS05250	0.39	-0.5
1,080,632	-				+1.4
1,080,809	+		DZA65_RS05250	0.63	-1.7
1,080,809	+		DZA65_RS05250	0.63	+0.2
1,080,810	-		DZA65_RS05250	0.63	+0.1
1,080,903	+		DZA65_RS05250	0.76	-0.2
1,080,903	+		DZA65_RS05250	0.76	+1.4
1,080,914	+		DZA65_RS05250	0.78	-0.4
1,080,914	+		DZA65_RS05250	0.78	-0.0
1,080,914	+		DZA65_RS05250	0.78	-2.4
1,080,914	+		DZA65_RS05250	0.78	-0.6
1,080,914	+		DZA65_RS05250	0.78	-0.3
1,080,915	-		DZA65_RS05250	0.78	-0.2
1,080,915	-		DZA65_RS05250	0.78	-0.6
1,080,915	-		DZA65_RS05250	0.78	-0.4
1,080,915	-		DZA65_RS05250	0.78	+0.9
1,080,915	-		DZA65_RS05250	0.78	-0.3
1,080,915	-		DZA65_RS05250	0.78	-2.8
1,080,915	-		DZA65_RS05250	0.78	-0.2
1,080,915	-		DZA65_RS05250	0.78	-0.1
1,080,915	-		DZA65_RS05250	0.78	-0.3
1,080,965	+		DZA65_RS05250	0.85	-0.4
1,080,965	+		DZA65_RS05250	0.85	-0.7
1,080,966	-		DZA65_RS05250	0.85	-0.1
1,080,966	-		DZA65_RS05250	0.85	+1.5
1,080,966	-		DZA65_RS05250	0.85	-1.2
1,080,966	-		DZA65_RS05250	0.85	-0.8
1,080,972	+		DZA65_RS05250	0.86	-0.1
1,080,972	+		DZA65_RS05250	0.86	-3.0
1,080,972	+		DZA65_RS05250	0.86	+0.4
1,080,972	+		DZA65_RS05250	0.86	-1.8
1,080,972	+		DZA65_RS05250	0.86	-0.0
1,080,973	-		DZA65_RS05250	0.86	-1.6
1,080,973	-		DZA65_RS05250	0.86	+0.2
1,080,973	-		DZA65_RS05250	0.86	-0.1
1,080,973	-		DZA65_RS05250	0.86	+0.4
1,081,072	-				+1.7
1,081,079	-				-0.2
1,081,099	-				+0.4
1,081,102	+				+0.2
1,081,103	-				-0.6
1,081,103	-				-0.4
1,081,260	+		DZA65_RS05255	0.54	-1.4
1,081,260	+		DZA65_RS05255	0.54	-1.1
1,081,261	-		DZA65_RS05255	0.54	+0.4
1,081,261	-		DZA65_RS05255	0.54	-0.6
1,081,261	-		DZA65_RS05255	0.54	-0.4
1,081,261	-		DZA65_RS05255	0.54	+0.4
1,081,330	+		DZA65_RS05255	0.74	-0.0
1,081,330	+		DZA65_RS05255	0.74	-0.3
1,081,330	+		DZA65_RS05255	0.74	-0.9
1,081,330	+		DZA65_RS05255	0.74	-2.4
1,081,331	-		DZA65_RS05255	0.75	+2.1
1,081,331	-		DZA65_RS05255	0.75	-1.4
1,081,331	-		DZA65_RS05255	0.75	+1.1
1,081,331	-		DZA65_RS05255	0.75	-0.1
1,081,331	-		DZA65_RS05255	0.75	-0.6
1,081,384	+				-0.8
1,081,384	+				+0.7
1,081,384	+				+0.7
1,081,445	-				-0.0
1,081,529	+				+0.3
1,081,529	+				-0.3
1,081,529	+				-1.8
1,081,529	+				+0.7
1,081,529	+				-2.5
1,081,529	+				+0.6
1,081,530	-				+0.1
1,081,530	-				+0.1
1,081,530	-				+1.1
1,081,530	-				-0.2
1,081,530	-				+1.0
1,081,538	+				-0.6
1,081,539	-				+1.5
1,081,539	-				+0.3
1,081,590	+				-2.4
1,081,590	+				+1.1
1,081,590	+				-1.6
1,081,693	+		DZA65_RS05260	0.23	-1.2
1,081,693	+		DZA65_RS05260	0.23	-0.4
1,081,693	+		DZA65_RS05260	0.23	-0.7
1,081,693	+		DZA65_RS05260	0.23	-0.2
1,081,693	+		DZA65_RS05260	0.23	-1.2
1,081,694	-		DZA65_RS05260	0.23	+0.1
1,081,694	-		DZA65_RS05260	0.23	+0.0
1,081,694	-		DZA65_RS05260	0.23	+0.9
1,081,694	-		DZA65_RS05260	0.23	-0.1
1,081,694	-		DZA65_RS05260	0.23	+1.7
1,081,694	-		DZA65_RS05260	0.23	-0.2
1,081,694	-		DZA65_RS05260	0.23	-0.0
1,081,694	-		DZA65_RS05260	0.23	-1.0
1,081,752	+		DZA65_RS05260	0.31	-0.4
1,081,753	-		DZA65_RS05260	0.31	-1.0
1,081,868	+		DZA65_RS05260	0.47	+0.7
1,081,869	-		DZA65_RS05260	0.47	-2.0
1,081,869	-		DZA65_RS05260	0.47	+1.4
1,081,869	-		DZA65_RS05260	0.47	-0.4
1,081,906	+		DZA65_RS05260	0.52	-0.6
1,081,907	-		DZA65_RS05260	0.53	+0.8
1,081,907	-		DZA65_RS05260	0.53	-0.1
1,081,928	+		DZA65_RS05260	0.56	-0.5
1,081,973	+		DZA65_RS05260	0.62	-0.5