Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04690

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04680 and DZA65_RS04685 are separated by 2 nucleotidesDZA65_RS04685 and DZA65_RS04690 overlap by 4 nucleotidesDZA65_RS04690 and DZA65_RS04695 are separated by 200 nucleotides DZA65_RS04680: DZA65_RS04680 - oxidoreductase, at 975,227 to 976,045 _RS04680 DZA65_RS04685: DZA65_RS04685 - hypothetical protein, at 976,048 to 976,458 _RS04685 DZA65_RS04690: DZA65_RS04690 - NADP-dependent oxidoreductase, at 976,455 to 977,474 _RS04690 DZA65_RS04695: DZA65_RS04695 - IS110 family transposase, at 977,675 to 978,679 _RS04695 Position (kb) 976 977 978Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 975.505 kb on + strand, within DZA65_RS04680at 975.505 kb on + strand, within DZA65_RS04680at 975.506 kb on - strand, within DZA65_RS04680at 975.506 kb on - strand, within DZA65_RS04680at 975.506 kb on - strand, within DZA65_RS04680at 975.610 kb on + strand, within DZA65_RS04680at 975.611 kb on - strand, within DZA65_RS04680at 975.611 kb on - strand, within DZA65_RS04680at 975.647 kb on + strand, within DZA65_RS04680at 975.647 kb on + strand, within DZA65_RS04680at 975.647 kb on + strand, within DZA65_RS04680at 975.647 kb on + strand, within DZA65_RS04680at 975.647 kb on + strand, within DZA65_RS04680at 975.648 kb on - strand, within DZA65_RS04680at 975.648 kb on - strand, within DZA65_RS04680at 975.659 kb on + strand, within DZA65_RS04680at 975.659 kb on + strand, within DZA65_RS04680at 975.660 kb on - strand, within DZA65_RS04680at 975.660 kb on - strand, within DZA65_RS04680at 975.660 kb on - strand, within DZA65_RS04680at 975.660 kb on - strand, within DZA65_RS04680at 975.660 kb on - strand, within DZA65_RS04680at 975.660 kb on - strand, within DZA65_RS04680at 975.671 kb on - strand, within DZA65_RS04680at 975.727 kb on + strand, within DZA65_RS04680at 975.755 kb on + strand, within DZA65_RS04680at 975.756 kb on - strand, within DZA65_RS04680at 975.759 kb on + strand, within DZA65_RS04680at 975.759 kb on + strand, within DZA65_RS04680at 975.759 kb on + strand, within DZA65_RS04680at 975.759 kb on + strand, within DZA65_RS04680at 975.759 kb on + strand, within DZA65_RS04680at 975.759 kb on + strand, within DZA65_RS04680at 975.760 kb on - strand, within DZA65_RS04680at 975.760 kb on - strand, within DZA65_RS04680at 975.781 kb on + strand, within DZA65_RS04680at 975.781 kb on + strand, within DZA65_RS04680at 975.781 kb on + strand, within DZA65_RS04680at 975.782 kb on - strand, within DZA65_RS04680at 975.782 kb on - strand, within DZA65_RS04680at 975.812 kb on + strand, within DZA65_RS04680at 975.812 kb on + strand, within DZA65_RS04680at 975.812 kb on + strand, within DZA65_RS04680at 975.813 kb on - strand, within DZA65_RS04680at 975.813 kb on - strand, within DZA65_RS04680at 975.936 kb on - strand, within DZA65_RS04680at 976.112 kb on + strand, within DZA65_RS04685at 976.113 kb on - strand, within DZA65_RS04685at 976.209 kb on - strand, within DZA65_RS04685at 976.286 kb on + strand, within DZA65_RS04685at 976.287 kb on - strand, within DZA65_RS04685at 976.287 kb on - strand, within DZA65_RS04685at 976.304 kb on + strand, within DZA65_RS04685at 976.305 kb on - strand, within DZA65_RS04685at 976.305 kb on - strand, within DZA65_RS04685at 976.305 kb on - strand, within DZA65_RS04685at 976.374 kb on - strand, within DZA65_RS04685at 976.394 kb on + strand, within DZA65_RS04685at 976.394 kb on + strand, within DZA65_RS04685at 976.394 kb on + strand, within DZA65_RS04685at 976.395 kb on - strand, within DZA65_RS04685at 976.414 kb on - strand, within DZA65_RS04685at 976.464 kb on - strandat 976.481 kb on + strandat 976.500 kb on - strandat 976.571 kb on - strand, within DZA65_RS04690at 976.572 kb on + strand, within DZA65_RS04690at 976.572 kb on + strand, within DZA65_RS04690at 976.573 kb on - strand, within DZA65_RS04690at 976.573 kb on - strand, within DZA65_RS04690at 976.623 kb on - strand, within DZA65_RS04690at 976.623 kb on - strand, within DZA65_RS04690at 976.640 kb on + strand, within DZA65_RS04690at 976.640 kb on + strand, within DZA65_RS04690at 976.641 kb on - strand, within DZA65_RS04690at 976.739 kb on + strandat 976.756 kb on + strand, within DZA65_RS04690at 976.757 kb on - strand, within DZA65_RS04690at 976.757 kb on - strand, within DZA65_RS04690at 976.757 kb on - strand, within DZA65_RS04690at 976.757 kb on - strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strandat 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.859 kb on + strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.860 kb on - strand, within DZA65_RS04690at 976.968 kb on + strand, within DZA65_RS04690at 976.968 kb on + strand, within DZA65_RS04690at 976.968 kb on + strand, within DZA65_RS04690at 976.969 kb on - strand, within DZA65_RS04690at 976.969 kb on - strand, within DZA65_RS04690at 976.969 kb on - strand, within DZA65_RS04690at 976.969 kb on - strand, within DZA65_RS04690at 976.969 kb on - strand, within DZA65_RS04690at 977.006 kb on + strand, within DZA65_RS04690at 977.006 kb on + strand, within DZA65_RS04690at 977.020 kb on + strand, within DZA65_RS04690at 977.020 kb on + strand, within DZA65_RS04690at 977.053 kb on - strand, within DZA65_RS04690at 977.054 kb on + strand, within DZA65_RS04690at 977.054 kb on + strand, within DZA65_RS04690at 977.055 kb on - strand, within DZA65_RS04690at 977.055 kb on - strand, within DZA65_RS04690at 977.055 kb on - strand, within DZA65_RS04690at 977.055 kb on - strand, within DZA65_RS04690at 977.077 kb on + strand, within DZA65_RS04690at 977.077 kb on + strand, within DZA65_RS04690at 977.078 kb on - strand, within DZA65_RS04690at 977.078 kb on - strand, within DZA65_RS04690at 977.089 kb on - strand, within DZA65_RS04690at 977.093 kb on + strandat 977.165 kb on + strand, within DZA65_RS04690at 977.165 kb on + strand, within DZA65_RS04690at 977.165 kb on + strand, within DZA65_RS04690at 977.166 kb on - strand, within DZA65_RS04690at 977.166 kb on - strand, within DZA65_RS04690at 977.185 kb on + strand, within DZA65_RS04690at 977.186 kb on - strand, within DZA65_RS04690at 977.224 kb on + strand, within DZA65_RS04690at 977.224 kb on + strand, within DZA65_RS04690at 977.225 kb on - strand, within DZA65_RS04690at 977.261 kb on + strand, within DZA65_RS04690at 977.261 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.263 kb on + strand, within DZA65_RS04690at 977.264 kb on - strand, within DZA65_RS04690at 977.264 kb on - strand, within DZA65_RS04690at 977.264 kb on - strand, within DZA65_RS04690at 977.264 kb on - strand, within DZA65_RS04690at 977.264 kb on - strand, within DZA65_RS04690at 977.264 kb on - strand, within DZA65_RS04690at 977.270 kb on + strand, within DZA65_RS04690at 977.271 kb on - strand, within DZA65_RS04690at 977.293 kb on - strand, within DZA65_RS04690at 977.293 kb on - strand, within DZA65_RS04690at 977.338 kb on + strand, within DZA65_RS04690at 977.339 kb on - strand, within DZA65_RS04690at 977.339 kb on - strand, within DZA65_RS04690at 977.339 kb on - strand, within DZA65_RS04690at 977.350 kb on + strand, within DZA65_RS04690at 977.350 kb on + strand, within DZA65_RS04690at 977.421 kb on + strandat 977.421 kb on + strandat 977.422 kb on - strandat 977.422 kb on - strandat 977.422 kb on - strandat 977.464 kb on + strandat 977.464 kb on + strandat 977.464 kb on + strandat 977.465 kb on - strandat 977.465 kb on - strandat 977.465 kb on - strandat 977.465 kb on - strandat 977.465 kb on - strandat 977.540 kb on + strandat 977.582 kb on - strandat 977.582 kb on - strandat 977.582 kb on - strandat 977.596 kb on - strandat 977.596 kb on - strandat 977.596 kb on - strandat 977.596 kb on - strandat 977.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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975,505 + DZA65_RS04680 0.34 -0.6
975,505 + DZA65_RS04680 0.34 +0.4
975,506 - DZA65_RS04680 0.34 +1.0
975,506 - DZA65_RS04680 0.34 +0.7
975,506 - DZA65_RS04680 0.34 +0.1
975,610 + DZA65_RS04680 0.47 +0.2
975,611 - DZA65_RS04680 0.47 +0.4
975,611 - DZA65_RS04680 0.47 -0.9
975,647 + DZA65_RS04680 0.51 +0.4
975,647 + DZA65_RS04680 0.51 -2.4
975,647 + DZA65_RS04680 0.51 +0.6
975,647 + DZA65_RS04680 0.51 -0.0
975,647 + DZA65_RS04680 0.51 +0.4
975,648 - DZA65_RS04680 0.51 +0.4
975,648 - DZA65_RS04680 0.51 -0.8
975,659 + DZA65_RS04680 0.53 +0.5
975,659 + DZA65_RS04680 0.53 -0.1
975,660 - DZA65_RS04680 0.53 +0.8
975,660 - DZA65_RS04680 0.53 -0.9
975,660 - DZA65_RS04680 0.53 -0.1
975,660 - DZA65_RS04680 0.53 -2.6
975,660 - DZA65_RS04680 0.53 +0.1
975,660 - DZA65_RS04680 0.53 +1.2
975,671 - DZA65_RS04680 0.54 +0.6
975,727 + DZA65_RS04680 0.61 +0.6
975,755 + DZA65_RS04680 0.64 +0.4
975,756 - DZA65_RS04680 0.65 +0.0
975,759 + DZA65_RS04680 0.65 +0.2
975,759 + DZA65_RS04680 0.65 +0.6
975,759 + DZA65_RS04680 0.65 +1.4
975,759 + DZA65_RS04680 0.65 +0.3
975,759 + DZA65_RS04680 0.65 -0.6
975,759 + DZA65_RS04680 0.65 -2.1
975,760 - DZA65_RS04680 0.65 +1.3
975,760 - DZA65_RS04680 0.65 +0.4
975,781 + DZA65_RS04680 0.68 -0.5
975,781 + DZA65_RS04680 0.68 +0.1
975,781 + DZA65_RS04680 0.68 +0.3
975,782 - DZA65_RS04680 0.68 +1.4
975,782 - DZA65_RS04680 0.68 +0.6
975,812 + DZA65_RS04680 0.71 +0.2
975,812 + DZA65_RS04680 0.71 -0.3
975,812 + DZA65_RS04680 0.71 +0.1
975,813 - DZA65_RS04680 0.72 -0.4
975,813 - DZA65_RS04680 0.72 -2.2
975,936 - DZA65_RS04680 0.87 -0.7
976,112 + DZA65_RS04685 0.16 -0.4
976,113 - DZA65_RS04685 0.16 -0.3
976,209 - DZA65_RS04685 0.39 -0.6
976,286 + DZA65_RS04685 0.58 +0.4
976,287 - DZA65_RS04685 0.58 +0.2
976,287 - DZA65_RS04685 0.58 +0.8
976,304 + DZA65_RS04685 0.62 +0.7
976,305 - DZA65_RS04685 0.63 -0.0
976,305 - DZA65_RS04685 0.63 +0.2
976,305 - DZA65_RS04685 0.63 +0.4
976,374 - DZA65_RS04685 0.79 +1.5
976,394 + DZA65_RS04685 0.84 -0.3
976,394 + DZA65_RS04685 0.84 +0.3
976,394 + DZA65_RS04685 0.84 -0.1
976,395 - DZA65_RS04685 0.84 +0.7
976,414 - DZA65_RS04685 0.89 +0.1
976,464 - -0.7
976,481 + +0.2
976,500 - +0.2
976,571 - DZA65_RS04690 0.11 -1.0
976,572 + DZA65_RS04690 0.11 -0.3
976,572 + DZA65_RS04690 0.11 +0.0
976,573 - DZA65_RS04690 0.12 -1.5
976,573 - DZA65_RS04690 0.12 -0.2
976,623 - DZA65_RS04690 0.16 +0.1
976,623 - DZA65_RS04690 0.16 -0.1
976,640 + DZA65_RS04690 0.18 -1.2
976,640 + DZA65_RS04690 0.18 +0.0
976,641 - DZA65_RS04690 0.18 +1.6
976,739 + +2.7
976,756 + DZA65_RS04690 0.30 +1.6
976,757 - DZA65_RS04690 0.30 -0.3
976,757 - DZA65_RS04690 0.30 -1.0
976,757 - DZA65_RS04690 0.30 -0.1
976,757 - DZA65_RS04690 0.30 +0.4
976,859 + DZA65_RS04690 0.40 -0.1
976,859 + DZA65_RS04690 0.40 -1.9
976,859 + DZA65_RS04690 0.40 -0.6
976,859 + DZA65_RS04690 0.40 +0.1
976,859 + DZA65_RS04690 0.40 -0.6
976,859 + DZA65_RS04690 0.40 +1.1
976,859 + DZA65_RS04690 0.40 -0.7
976,859 + DZA65_RS04690 0.40 -0.3
976,859 + DZA65_RS04690 0.40 -1.2
976,859 + DZA65_RS04690 0.40 +0.8
976,859 + DZA65_RS04690 0.40 +0.9
976,859 + DZA65_RS04690 0.40 -0.8
976,859 + DZA65_RS04690 0.40 -1.1
976,859 + +0.4
976,859 + DZA65_RS04690 0.40 -0.8
976,859 + DZA65_RS04690 0.40 -0.2
976,859 + DZA65_RS04690 0.40 -2.4
976,859 + DZA65_RS04690 0.40 -1.3
976,860 - DZA65_RS04690 0.40 +1.2
976,860 - DZA65_RS04690 0.40 -0.8
976,860 - DZA65_RS04690 0.40 +0.1
976,860 - DZA65_RS04690 0.40 -0.5
976,860 - DZA65_RS04690 0.40 -2.2
976,860 - DZA65_RS04690 0.40 +0.4
976,860 - DZA65_RS04690 0.40 -1.2
976,860 - DZA65_RS04690 0.40 +1.3
976,860 - DZA65_RS04690 0.40 +0.0
976,860 - DZA65_RS04690 0.40 +0.4
976,968 + DZA65_RS04690 0.50 +0.1
976,968 + DZA65_RS04690 0.50 +0.4
976,968 + DZA65_RS04690 0.50 -2.0
976,969 - DZA65_RS04690 0.50 -1.2
976,969 - DZA65_RS04690 0.50 -0.5
976,969 - DZA65_RS04690 0.50 +2.1
976,969 - DZA65_RS04690 0.50 +0.7
976,969 - DZA65_RS04690 0.50 -0.3
977,006 + DZA65_RS04690 0.54 +0.7
977,006 + DZA65_RS04690 0.54 +0.1
977,020 + DZA65_RS04690 0.55 -1.8
977,020 + DZA65_RS04690 0.55 -1.4
977,053 - DZA65_RS04690 0.59 -0.4
977,054 + DZA65_RS04690 0.59 +0.5
977,054 + DZA65_RS04690 0.59 -1.0
977,055 - DZA65_RS04690 0.59 -1.6
977,055 - DZA65_RS04690 0.59 -1.0
977,055 - DZA65_RS04690 0.59 +0.9
977,055 - DZA65_RS04690 0.59 -0.3
977,077 + DZA65_RS04690 0.61 -0.5
977,077 + DZA65_RS04690 0.61 -3.0
977,078 - DZA65_RS04690 0.61 +1.0
977,078 - DZA65_RS04690 0.61 -2.0
977,089 - DZA65_RS04690 0.62 -1.2
977,093 + +1.2
977,165 + DZA65_RS04690 0.70 +0.4
977,165 + DZA65_RS04690 0.70 -0.1
977,165 + DZA65_RS04690 0.70 -0.1
977,166 - DZA65_RS04690 0.70 -0.1
977,166 - DZA65_RS04690 0.70 -1.5
977,185 + DZA65_RS04690 0.72 -1.0
977,186 - DZA65_RS04690 0.72 +0.0
977,224 + DZA65_RS04690 0.75 -1.2
977,224 + DZA65_RS04690 0.75 -0.6
977,225 - DZA65_RS04690 0.75 +0.8
977,261 + DZA65_RS04690 0.79 +1.6
977,261 + DZA65_RS04690 0.79 -0.1
977,263 + DZA65_RS04690 0.79 +0.1
977,263 + DZA65_RS04690 0.79 -1.1
977,263 + DZA65_RS04690 0.79 -2.6
977,263 + DZA65_RS04690 0.79 +0.2
977,263 + DZA65_RS04690 0.79 +0.8
977,263 + DZA65_RS04690 0.79 -0.5
977,263 + DZA65_RS04690 0.79 -0.0
977,263 + DZA65_RS04690 0.79 +0.4
977,263 + DZA65_RS04690 0.79 +0.3
977,263 + DZA65_RS04690 0.79 +0.6
977,263 + DZA65_RS04690 0.79 -0.3
977,263 + DZA65_RS04690 0.79 -0.1
977,263 + DZA65_RS04690 0.79 +0.0
977,264 - DZA65_RS04690 0.79 +0.1
977,264 - DZA65_RS04690 0.79 +0.8
977,264 - DZA65_RS04690 0.79 -0.1
977,264 - DZA65_RS04690 0.79 -0.0
977,264 - DZA65_RS04690 0.79 +1.2
977,264 - DZA65_RS04690 0.79 +0.4
977,270 + DZA65_RS04690 0.80 -0.3
977,271 - DZA65_RS04690 0.80 -1.0
977,293 - DZA65_RS04690 0.82 -0.6
977,293 - DZA65_RS04690 0.82 +0.7
977,338 + DZA65_RS04690 0.87 -0.3
977,339 - DZA65_RS04690 0.87 -0.7
977,339 - DZA65_RS04690 0.87 +1.0
977,339 - DZA65_RS04690 0.87 -2.9
977,350 + DZA65_RS04690 0.88 +1.0
977,350 + DZA65_RS04690 0.88 -0.2
977,421 + +0.5
977,421 + -0.2
977,422 - -0.9
977,422 - -0.9
977,422 - -2.4
977,464 + +0.5
977,464 + -0.3
977,464 + +1.7
977,465 - +0.2
977,465 - +0.2
977,465 - +0.9
977,465 - +0.1
977,465 - -1.0
977,540 + -0.2
977,582 - -0.9
977,582 - +0.4
977,582 - -0.1
977,596 - +1.0
977,596 - -0.4
977,596 - -0.9
977,596 - -0.4
977,596 - +1.7

Or see this region's nucleotide sequence