Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04585 and DZA65_RS04590 are separated by 130 nucleotides DZA65_RS04590 and DZA65_RS04595 overlap by 1 nucleotides
DZA65_RS04585: DZA65_RS04585 - HAMP domain-containing protein, at 957,606 to 958,775
_RS04585
DZA65_RS04590: DZA65_RS04590 - efflux RND transporter periplasmic adaptor subunit, at 958,906 to 960,048
_RS04590
DZA65_RS04595: DZA65_RS04595 - efflux RND transporter permease subunit, at 960,048 to 963,113
_RS04595
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 958.319 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.429 kb on - strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.570 kb on - strand, within DZA65_RS04585 at 958.752 kb on - strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.874 kb on - strand at 958.874 kb on - strand at 958.891 kb on - strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.915 kb on - strand at 958.915 kb on - strand at 958.946 kb on + strand at 958.946 kb on + strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 959.332 kb on - strand, within DZA65_RS04590 at 959.365 kb on - strand, within DZA65_RS04590 at 959.470 kb on + strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.642 kb on + strand, within DZA65_RS04590 at 959.790 kb on - strand, within DZA65_RS04590 at 959.932 kb on + strand, within DZA65_RS04590 at 959.932 kb on + strand, within DZA65_RS04590 at 959.933 kb on - strand, within DZA65_RS04590 at 959.933 kb on - strand, within DZA65_RS04590 at 960.027 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.047 kb on - strand at 960.047 kb on - strand at 960.047 kb on - strand at 960.156 kb on + strand at 960.157 kb on - strand at 960.191 kb on + strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.197 kb on + strand at 960.283 kb on + strand at 960.297 kb on + strand at 960.297 kb on + strand at 960.298 kb on - strand at 960.308 kb on + strand at 960.318 kb on + strand at 960.318 kb on + strand at 960.318 kb on + strand at 960.319 kb on - strand at 960.319 kb on - strand at 960.319 kb on - strand at 960.319 kb on - strand at 960.365 kb on + strand, within DZA65_RS04595 at 960.366 kb on - strand, within DZA65_RS04595 at 960.366 kb on - strand, within DZA65_RS04595 at 960.382 kb on + strand, within DZA65_RS04595 at 960.383 kb on - strand, within DZA65_RS04595 at 960.396 kb on + strand, within DZA65_RS04595 at 960.397 kb on - strand, within DZA65_RS04595 at 960.422 kb on + strand, within DZA65_RS04595 at 960.422 kb on + strand, within DZA65_RS04595 at 960.422 kb on + strand, within DZA65_RS04595 at 960.482 kb on + strand, within DZA65_RS04595 at 960.483 kb on - strand, within DZA65_RS04595 at 960.483 kb on - strand, within DZA65_RS04595 at 960.498 kb on + strand, within DZA65_RS04595 at 960.519 kb on + strand, within DZA65_RS04595 at 960.695 kb on - strand, within DZA65_RS04595 at 960.855 kb on + strand, within DZA65_RS04595
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 958,319 + DZA65_RS04585 0.61 -0.7 958,397 + DZA65_RS04585 0.68 -2.7 958,397 + DZA65_RS04585 0.68 -0.6 958,397 + DZA65_RS04585 0.68 -0.4 958,398 - DZA65_RS04585 0.68 +0.4 958,398 - DZA65_RS04585 0.68 -0.1 958,398 - DZA65_RS04585 0.68 -0.2 958,429 - DZA65_RS04585 0.70 -0.9 958,520 + DZA65_RS04585 0.78 +0.9 958,520 + DZA65_RS04585 0.78 -1.2 958,520 + DZA65_RS04585 0.78 -0.6 958,520 + DZA65_RS04585 0.78 +0.1 958,520 + DZA65_RS04585 0.78 +0.7 958,521 - DZA65_RS04585 0.78 +0.4 958,521 - DZA65_RS04585 0.78 +0.5 958,521 - DZA65_RS04585 0.78 +0.2 958,521 - DZA65_RS04585 0.78 +0.7 958,570 - DZA65_RS04585 0.82 -0.5 958,752 - +1.0 958,873 + -1.5 958,873 + -2.4 958,873 + +0.2 958,873 + +0.4 958,873 + +0.6 958,874 - -1.3 958,874 - +0.5 958,891 - -1.3 958,914 + -0.8 958,914 + -0.4 958,914 + +1.1 958,915 - +0.3 958,915 - -0.1 958,946 + +0.9 958,946 + -0.3 958,947 - -0.2 958,947 - +0.6 958,947 - +0.6 958,947 - -0.3 958,947 - -0.4 959,332 - DZA65_RS04590 0.37 -3.3 959,365 - DZA65_RS04590 0.40 -0.6 959,470 + DZA65_RS04590 0.49 +0.1 959,471 - DZA65_RS04590 0.49 -0.3 959,471 - DZA65_RS04590 0.49 -0.3 959,471 - DZA65_RS04590 0.49 +1.3 959,471 - DZA65_RS04590 0.49 -0.6 959,642 + DZA65_RS04590 0.64 -1.6 959,790 - DZA65_RS04590 0.77 -0.5 959,932 + DZA65_RS04590 0.90 -0.2 959,932 + DZA65_RS04590 0.90 +0.7 959,933 - DZA65_RS04590 0.90 -0.9 959,933 - DZA65_RS04590 0.90 -0.6 960,027 + -0.5 960,046 + +0.1 960,046 + -0.7 960,046 + +1.7 960,046 + -0.3 960,046 + +0.6 960,047 - +1.6 960,047 - -1.4 960,047 - -0.1 960,156 + +0.4 960,157 - -0.0 960,191 + -0.1 960,192 - -1.6 960,192 - -0.1 960,192 - +0.8 960,192 - -0.2 960,192 - -0.2 960,197 + -0.6 960,283 + +0.2 960,297 + +1.2 960,297 + +0.1 960,298 - -0.7 960,308 + +0.7 960,318 + +0.4 960,318 + +0.4 960,318 + -0.4 960,319 - +0.3 960,319 - -1.2 960,319 - -0.2 960,319 - -2.2 960,365 + DZA65_RS04595 0.10 +0.9 960,366 - DZA65_RS04595 0.10 -0.4 960,366 - DZA65_RS04595 0.10 -0.8 960,382 + DZA65_RS04595 0.11 +0.7 960,383 - DZA65_RS04595 0.11 -0.2 960,396 + DZA65_RS04595 0.11 +0.0 960,397 - DZA65_RS04595 0.11 +0.2 960,422 + DZA65_RS04595 0.12 -2.2 960,422 + DZA65_RS04595 0.12 -1.2 960,422 + DZA65_RS04595 0.12 -1.3 960,482 + DZA65_RS04595 0.14 -0.2 960,483 - DZA65_RS04595 0.14 +0.6 960,483 - DZA65_RS04595 0.14 -0.2 960,498 + DZA65_RS04595 0.15 +0.3 960,519 + DZA65_RS04595 0.15 -0.3 960,695 - DZA65_RS04595 0.21 +0.6 960,855 + DZA65_RS04595 0.26 +0.0
Or see this region's nucleotide sequence