Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04515 and DZA65_RS04520 are separated by 337 nucleotides DZA65_RS04520 and DZA65_RS04525 are separated by 117 nucleotides DZA65_RS04525 and DZA65_RS04530 are separated by 121 nucleotides
DZA65_RS04515: DZA65_RS04515 - multidrug efflux MFS transporter, at 941,165 to 942,358
_RS04515
DZA65_RS04520: DZA65_RS04520 - stress response protein AzuC, at 942,696 to 942,779
_RS04520
DZA65_RS04525: DZA65_RS04525 - tartrate dehydrogenase, at 942,897 to 943,982
_RS04525
DZA65_RS04530: DZA65_RS04530 - LysR family transcriptional regulator, at 944,104 to 945,060
_RS04530
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.912 kb on + strand, within DZA65_RS04515 at 942.001 kb on + strand, within DZA65_RS04515 at 942.002 kb on - strand, within DZA65_RS04515 at 942.015 kb on + strand, within DZA65_RS04515 at 942.016 kb on - strand, within DZA65_RS04515 at 942.050 kb on - strand, within DZA65_RS04515 at 942.050 kb on - strand, within DZA65_RS04515 at 942.083 kb on + strand, within DZA65_RS04515 at 942.083 kb on + strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.285 kb on - strand at 942.358 kb on + strand at 942.370 kb on + strand at 942.371 kb on - strand at 942.421 kb on + strand at 942.434 kb on + strand at 942.434 kb on + strand at 942.435 kb on - strand at 942.438 kb on - strand at 942.465 kb on + strand at 942.471 kb on + strand at 942.473 kb on + strand at 942.486 kb on - strand at 942.547 kb on + strand at 942.547 kb on + strand at 942.547 kb on + strand at 942.548 kb on - strand at 942.556 kb on + strand at 942.556 kb on + strand at 942.557 kb on - strand at 942.557 kb on - strand at 942.557 kb on - strand at 942.571 kb on + strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.707 kb on + strand, within DZA65_RS04520 at 942.707 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.747 kb on + strand, within DZA65_RS04520 at 942.748 kb on - strand, within DZA65_RS04520 at 942.748 kb on - strand, within DZA65_RS04520 at 942.777 kb on + strand at 942.777 kb on + strand at 942.777 kb on + strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.785 kb on + strand at 942.786 kb on - strand at 942.799 kb on + strand at 942.799 kb on + strand at 942.800 kb on - strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.806 kb on - strand at 942.806 kb on - strand at 942.823 kb on - strand at 942.851 kb on - strand at 942.864 kb on + strand at 942.864 kb on + strand at 942.865 kb on - strand at 942.892 kb on + strand at 942.892 kb on + strand at 942.892 kb on + strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.906 kb on + strand at 942.906 kb on + strand at 942.906 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 943.017 kb on + strand, within DZA65_RS04525 at 943.018 kb on - strand, within DZA65_RS04525 at 943.018 kb on - strand, within DZA65_RS04525 at 943.307 kb on + strand, within DZA65_RS04525 at 943.313 kb on + strand, within DZA65_RS04525 at 943.314 kb on - strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.379 kb on - strand, within DZA65_RS04525 at 943.561 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.908 kb on + strand at 943.909 kb on - strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.040 kb on - strand at 944.040 kb on - strand at 944.140 kb on - strand at 944.140 kb on - strand at 944.240 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.297 kb on - strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.352 kb on - strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.614 kb on + strand, within DZA65_RS04530 at 944.686 kb on + strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.717 kb on - strand, within DZA65_RS04530 at 944.736 kb on + strand, within DZA65_RS04530 at 944.815 kb on - strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.917 kb on + strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 941,912 + DZA65_RS04515 0.63 -1.9 942,001 + DZA65_RS04515 0.70 -0.4 942,002 - DZA65_RS04515 0.70 -0.3 942,015 + DZA65_RS04515 0.71 -0.3 942,016 - DZA65_RS04515 0.71 -0.3 942,050 - DZA65_RS04515 0.74 -1.5 942,050 - DZA65_RS04515 0.74 -0.4 942,083 + DZA65_RS04515 0.77 +0.5 942,083 + DZA65_RS04515 0.77 -0.2 942,084 - DZA65_RS04515 0.77 -1.6 942,084 - DZA65_RS04515 0.77 -1.0 942,084 - DZA65_RS04515 0.77 +0.8 942,264 + -0.7 942,264 + -0.3 942,264 + +0.4 942,264 + -0.6 942,264 + +0.3 942,264 + -0.6 942,264 + +1.0 942,265 - +0.0 942,265 - +0.1 942,265 - +0.3 942,265 - +0.0 942,265 - +0.4 942,265 - -0.2 942,265 - -1.3 942,265 - -0.1 942,265 - +1.0 942,265 - +2.6 942,265 - -1.5 942,285 - -0.6 942,358 + +0.1 942,370 + -0.4 942,371 - -1.2 942,421 + +0.9 942,434 + -0.2 942,434 + +0.6 942,435 - +0.2 942,438 - -0.1 942,465 + +0.0 942,471 + -2.2 942,473 + -0.7 942,486 - -0.9 942,547 + -2.7 942,547 + +0.4 942,547 + -0.4 942,548 - -1.2 942,556 + +0.4 942,556 + -0.1 942,557 - -0.3 942,557 - -0.1 942,557 - -0.2 942,571 + -0.6 942,678 - +0.0 942,678 - -1.4 942,678 - +0.7 942,678 - -0.3 942,707 + DZA65_RS04520 0.13 +0.4 942,707 + DZA65_RS04520 0.13 +0.6 942,735 + DZA65_RS04520 0.46 -0.7 942,735 + DZA65_RS04520 0.46 +1.0 942,735 + DZA65_RS04520 0.46 -0.7 942,736 - DZA65_RS04520 0.48 -0.2 942,736 - DZA65_RS04520 0.48 +0.2 942,736 - DZA65_RS04520 0.48 +1.4 942,747 + DZA65_RS04520 0.61 +0.4 942,748 - DZA65_RS04520 0.62 -0.1 942,748 - DZA65_RS04520 0.62 -1.8 942,777 + -1.0 942,777 + -0.6 942,777 + -1.6 942,778 - +0.6 942,778 - +0.1 942,778 - -0.4 942,778 - -1.6 942,778 - -0.5 942,778 - -1.2 942,785 + -0.3 942,786 - -1.3 942,799 + +0.4 942,799 + -0.1 942,800 - -0.5 942,802 + -2.4 942,802 + -0.9 942,802 + +0.4 942,802 + +0.8 942,803 - +0.2 942,803 - -1.5 942,803 - -1.6 942,803 - -1.7 942,806 - -2.0 942,806 - +1.0 942,823 - +0.6 942,851 - +2.4 942,864 + +0.4 942,864 + -0.8 942,865 - +0.7 942,892 + -1.1 942,892 + +1.4 942,892 + -0.4 942,893 - +0.3 942,893 - +0.8 942,893 - -0.6 942,893 - +0.8 942,906 + -0.4 942,906 + -0.8 942,906 + +1.1 942,941 + +0.8 942,941 + +0.2 942,941 + -0.2 942,941 + -1.2 942,941 + +0.0 942,941 + +0.4 942,941 + +0.8 942,941 + -0.6 942,942 - +0.1 942,942 - +1.2 942,942 - -2.4 942,942 - -0.5 942,942 - +0.7 942,942 - -1.6 942,942 - +0.2 942,942 - +1.1 942,942 - +1.0 942,942 - -2.6 942,942 - -0.1 942,942 - +0.3 942,942 - -1.4 942,942 - -0.5 943,017 + DZA65_RS04525 0.11 +1.3 943,018 - DZA65_RS04525 0.11 -0.9 943,018 - DZA65_RS04525 0.11 +1.8 943,307 + DZA65_RS04525 0.38 +2.0 943,313 + DZA65_RS04525 0.38 -0.5 943,314 - DZA65_RS04525 0.38 -0.3 943,318 + DZA65_RS04525 0.39 -0.7 943,318 + DZA65_RS04525 0.39 -0.5 943,318 + DZA65_RS04525 0.39 -0.3 943,318 + DZA65_RS04525 0.39 -0.6 943,318 + DZA65_RS04525 0.39 +0.1 943,318 + DZA65_RS04525 0.39 +0.4 943,318 + DZA65_RS04525 0.39 +0.4 943,318 + DZA65_RS04525 0.39 +0.2 943,318 + DZA65_RS04525 0.39 +1.6 943,319 - DZA65_RS04525 0.39 +0.8 943,319 - DZA65_RS04525 0.39 -1.6 943,319 - +2.0 943,319 - DZA65_RS04525 0.39 +0.1 943,319 - DZA65_RS04525 0.39 +0.6 943,319 - DZA65_RS04525 0.39 +0.4 943,319 - DZA65_RS04525 0.39 -0.2 943,379 - DZA65_RS04525 0.44 -1.2 943,561 + DZA65_RS04525 0.61 -1.9 943,591 + DZA65_RS04525 0.64 -0.2 943,591 + DZA65_RS04525 0.64 -0.2 943,672 + DZA65_RS04525 0.71 +0.7 943,672 + DZA65_RS04525 0.71 -0.4 943,673 - DZA65_RS04525 0.71 -0.2 943,673 - DZA65_RS04525 0.71 +1.1 943,673 - DZA65_RS04525 0.71 +0.0 943,762 + DZA65_RS04525 0.80 -1.1 943,762 + DZA65_RS04525 0.80 +0.1 943,762 + DZA65_RS04525 0.80 -0.3 943,762 + DZA65_RS04525 0.80 +1.1 943,763 - DZA65_RS04525 0.80 -1.0 943,763 - DZA65_RS04525 0.80 +0.7 943,763 - DZA65_RS04525 0.80 +0.0 943,763 - DZA65_RS04525 0.80 -0.1 943,763 - DZA65_RS04525 0.80 +0.8 943,828 + DZA65_RS04525 0.86 -0.2 943,828 + DZA65_RS04525 0.86 -0.9 943,829 - DZA65_RS04525 0.86 -0.2 943,829 - DZA65_RS04525 0.86 -0.3 943,831 + DZA65_RS04525 0.86 -0.2 943,831 + DZA65_RS04525 0.86 +0.2 943,832 - DZA65_RS04525 0.86 -0.3 943,832 - DZA65_RS04525 0.86 -0.6 943,908 + -0.8 943,909 - +0.2 944,035 + -1.2 944,035 + -0.2 944,035 + -0.2 944,035 + -0.5 944,035 + -0.3 944,035 + +1.2 944,035 + -0.6 944,035 + +0.6 944,035 + -0.9 944,036 - -0.6 944,036 - +0.2 944,036 - +0.2 944,039 + +1.1 944,039 + -0.7 944,039 + +0.7 944,040 - -0.6 944,040 - -1.7 944,140 - -0.8 944,140 - -0.1 944,240 + DZA65_RS04530 0.14 +0.3 944,256 + DZA65_RS04530 0.16 +1.0 944,256 + DZA65_RS04530 0.16 +0.1 944,296 + DZA65_RS04530 0.20 -0.4 944,296 + DZA65_RS04530 0.20 +0.4 944,297 - DZA65_RS04530 0.20 -1.7 944,351 + DZA65_RS04530 0.26 +0.3 944,351 + DZA65_RS04530 0.26 +0.3 944,352 - DZA65_RS04530 0.26 -0.6 944,421 + DZA65_RS04530 0.33 -0.3 944,421 + DZA65_RS04530 0.33 +0.3 944,421 + DZA65_RS04530 0.33 -1.0 944,421 + +0.1 944,484 + DZA65_RS04530 0.40 +1.4 944,484 + DZA65_RS04530 0.40 +0.9 944,484 + DZA65_RS04530 0.40 -1.2 944,485 - DZA65_RS04530 0.40 +1.0 944,485 - DZA65_RS04530 0.40 -0.0 944,485 - DZA65_RS04530 0.40 +0.7 944,614 + DZA65_RS04530 0.53 +0.6 944,686 + DZA65_RS04530 0.61 +0.6 944,687 - DZA65_RS04530 0.61 -0.2 944,687 - DZA65_RS04530 0.61 -0.6 944,717 - DZA65_RS04530 0.64 -0.5 944,736 + DZA65_RS04530 0.66 +0.8 944,815 - DZA65_RS04530 0.74 -1.4 944,884 + DZA65_RS04530 0.82 +0.3 944,884 + DZA65_RS04530 0.82 +0.8 944,884 + DZA65_RS04530 0.82 -3.4 944,885 - DZA65_RS04530 0.82 -0.3 944,885 - DZA65_RS04530 0.82 -0.2 944,908 + DZA65_RS04530 0.84 +0.4 944,908 + DZA65_RS04530 0.84 -0.1 944,908 + DZA65_RS04530 0.84 +0.3 944,908 + DZA65_RS04530 0.84 +0.8 944,909 - DZA65_RS04530 0.84 +2.4 944,909 - DZA65_RS04530 0.84 +0.1 944,909 - DZA65_RS04530 0.84 -0.5 944,909 - DZA65_RS04530 0.84 +0.4 944,909 - DZA65_RS04530 0.84 +0.4 944,909 - DZA65_RS04530 0.84 +0.2 944,909 - DZA65_RS04530 0.84 +0.4 944,909 - DZA65_RS04530 0.84 +1.6 944,909 - DZA65_RS04530 0.84 +0.3 944,909 - DZA65_RS04530 0.84 -0.9 944,909 - DZA65_RS04530 0.84 -1.2 944,917 + DZA65_RS04530 0.85 -0.8 944,918 - DZA65_RS04530 0.85 +0.5 944,918 - DZA65_RS04530 0.85 +0.4
Or see this region's nucleotide sequence