Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04510 and DZA65_RS04515 are separated by 162 nucleotides DZA65_RS04515 and DZA65_RS04520 are separated by 337 nucleotides DZA65_RS04520 and DZA65_RS04525 are separated by 117 nucleotides
DZA65_RS04510: DZA65_RS04510 - ABC transporter substrate-binding protein, at 939,698 to 941,002
_RS04510
DZA65_RS04515: DZA65_RS04515 - multidrug efflux MFS transporter, at 941,165 to 942,358
_RS04515
DZA65_RS04520: DZA65_RS04520 - stress response protein AzuC, at 942,696 to 942,779
_RS04520
DZA65_RS04525: DZA65_RS04525 - tartrate dehydrogenase, at 942,897 to 943,982
_RS04525
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 940.215 kb on + strand, within DZA65_RS04510 at 940.215 kb on + strand, within DZA65_RS04510 at 940.215 kb on + strand, within DZA65_RS04510 at 940.215 kb on + strand, within DZA65_RS04510 at 940.215 kb on + strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.216 kb on - strand, within DZA65_RS04510 at 940.274 kb on + strand, within DZA65_RS04510 at 940.274 kb on + strand, within DZA65_RS04510 at 940.275 kb on - strand, within DZA65_RS04510 at 940.349 kb on - strand, within DZA65_RS04510 at 940.349 kb on - strand, within DZA65_RS04510 at 940.429 kb on + strand, within DZA65_RS04510 at 940.429 kb on + strand, within DZA65_RS04510 at 940.429 kb on + strand, within DZA65_RS04510 at 940.429 kb on + strand, within DZA65_RS04510 at 940.429 kb on + strand, within DZA65_RS04510 at 940.429 kb on + strand, within DZA65_RS04510 at 940.430 kb on - strand, within DZA65_RS04510 at 940.440 kb on - strand, within DZA65_RS04510 at 940.440 kb on - strand, within DZA65_RS04510 at 940.537 kb on + strand, within DZA65_RS04510 at 940.538 kb on - strand, within DZA65_RS04510 at 940.539 kb on + strand, within DZA65_RS04510 at 940.539 kb on + strand, within DZA65_RS04510 at 940.540 kb on - strand, within DZA65_RS04510 at 940.540 kb on - strand, within DZA65_RS04510 at 940.540 kb on - strand, within DZA65_RS04510 at 940.540 kb on - strand, within DZA65_RS04510 at 940.540 kb on - strand, within DZA65_RS04510 at 940.741 kb on - strand, within DZA65_RS04510 at 940.822 kb on - strand, within DZA65_RS04510 at 940.945 kb on + strand at 940.946 kb on - strand at 941.020 kb on + strand at 941.020 kb on + strand at 941.020 kb on + strand at 941.021 kb on - strand at 941.021 kb on - strand at 941.021 kb on - strand at 941.021 kb on - strand at 941.021 kb on - strand at 941.034 kb on + strand at 941.035 kb on - strand at 941.035 kb on - strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.047 kb on + strand at 941.048 kb on - strand at 941.048 kb on - strand at 941.048 kb on - strand at 941.048 kb on - strand at 941.048 kb on - strand at 941.064 kb on + strand at 941.065 kb on - strand at 941.313 kb on + strand, within DZA65_RS04515 at 941.313 kb on + strand, within DZA65_RS04515 at 941.313 kb on + strand at 941.313 kb on + strand, within DZA65_RS04515 at 941.313 kb on + strand, within DZA65_RS04515 at 941.313 kb on + strand, within DZA65_RS04515 at 941.313 kb on + strand, within DZA65_RS04515 at 941.314 kb on - strand, within DZA65_RS04515 at 941.314 kb on - strand, within DZA65_RS04515 at 941.314 kb on - strand, within DZA65_RS04515 at 941.314 kb on - strand, within DZA65_RS04515 at 941.329 kb on + strand, within DZA65_RS04515 at 941.329 kb on + strand at 941.329 kb on + strand, within DZA65_RS04515 at 941.330 kb on - strand, within DZA65_RS04515 at 941.330 kb on - strand, within DZA65_RS04515 at 941.330 kb on - strand, within DZA65_RS04515 at 941.330 kb on - strand, within DZA65_RS04515 at 941.331 kb on + strand, within DZA65_RS04515 at 941.342 kb on - strand, within DZA65_RS04515 at 941.342 kb on - strand, within DZA65_RS04515 at 941.367 kb on + strand, within DZA65_RS04515 at 941.367 kb on + strand, within DZA65_RS04515 at 941.367 kb on + strand, within DZA65_RS04515 at 941.368 kb on - strand, within DZA65_RS04515 at 941.387 kb on + strand, within DZA65_RS04515 at 941.620 kb on + strand, within DZA65_RS04515 at 941.621 kb on - strand, within DZA65_RS04515 at 941.621 kb on - strand, within DZA65_RS04515 at 941.719 kb on + strand, within DZA65_RS04515 at 941.720 kb on - strand, within DZA65_RS04515 at 941.819 kb on - strand, within DZA65_RS04515 at 941.819 kb on - strand, within DZA65_RS04515 at 941.819 kb on - strand, within DZA65_RS04515 at 941.833 kb on + strand, within DZA65_RS04515 at 941.834 kb on - strand, within DZA65_RS04515 at 941.834 kb on - strand, within DZA65_RS04515 at 941.834 kb on - strand, within DZA65_RS04515 at 941.912 kb on + strand, within DZA65_RS04515 at 942.001 kb on + strand, within DZA65_RS04515 at 942.002 kb on - strand, within DZA65_RS04515 at 942.015 kb on + strand, within DZA65_RS04515 at 942.016 kb on - strand, within DZA65_RS04515 at 942.050 kb on - strand, within DZA65_RS04515 at 942.050 kb on - strand, within DZA65_RS04515 at 942.083 kb on + strand, within DZA65_RS04515 at 942.083 kb on + strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.285 kb on - strand at 942.358 kb on + strand at 942.370 kb on + strand at 942.371 kb on - strand at 942.421 kb on + strand at 942.434 kb on + strand at 942.434 kb on + strand at 942.435 kb on - strand at 942.438 kb on - strand at 942.465 kb on + strand at 942.471 kb on + strand at 942.473 kb on + strand at 942.486 kb on - strand at 942.547 kb on + strand at 942.547 kb on + strand at 942.547 kb on + strand at 942.548 kb on - strand at 942.556 kb on + strand at 942.556 kb on + strand at 942.557 kb on - strand at 942.557 kb on - strand at 942.557 kb on - strand at 942.571 kb on + strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.707 kb on + strand, within DZA65_RS04520 at 942.707 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.747 kb on + strand, within DZA65_RS04520 at 942.748 kb on - strand, within DZA65_RS04520 at 942.748 kb on - strand, within DZA65_RS04520 at 942.777 kb on + strand at 942.777 kb on + strand at 942.777 kb on + strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.785 kb on + strand at 942.786 kb on - strand at 942.799 kb on + strand at 942.799 kb on + strand at 942.800 kb on - strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.806 kb on - strand at 942.806 kb on - strand at 942.823 kb on - strand at 942.851 kb on - strand at 942.864 kb on + strand at 942.864 kb on + strand at 942.865 kb on - strand at 942.892 kb on + strand at 942.892 kb on + strand at 942.892 kb on + strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.906 kb on + strand at 942.906 kb on + strand at 942.906 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 943.017 kb on + strand, within DZA65_RS04525 at 943.018 kb on - strand, within DZA65_RS04525 at 943.018 kb on - strand, within DZA65_RS04525 at 943.307 kb on + strand, within DZA65_RS04525 at 943.313 kb on + strand, within DZA65_RS04525 at 943.314 kb on - strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 940,215 + DZA65_RS04510 0.40 -1.4 940,215 + DZA65_RS04510 0.40 +0.5 940,215 + DZA65_RS04510 0.40 +1.6 940,215 + DZA65_RS04510 0.40 -0.7 940,215 + DZA65_RS04510 0.40 +1.4 940,216 - DZA65_RS04510 0.40 -0.6 940,216 - DZA65_RS04510 0.40 +0.4 940,216 - DZA65_RS04510 0.40 -0.2 940,216 - DZA65_RS04510 0.40 +0.2 940,216 - DZA65_RS04510 0.40 -0.3 940,216 - DZA65_RS04510 0.40 -2.4 940,216 - DZA65_RS04510 0.40 -0.1 940,216 - DZA65_RS04510 0.40 +1.3 940,216 - DZA65_RS04510 0.40 -0.9 940,274 + DZA65_RS04510 0.44 -0.3 940,274 + DZA65_RS04510 0.44 -0.2 940,275 - DZA65_RS04510 0.44 -0.8 940,349 - DZA65_RS04510 0.50 +1.0 940,349 - DZA65_RS04510 0.50 -1.4 940,429 + DZA65_RS04510 0.56 +0.7 940,429 + DZA65_RS04510 0.56 +0.4 940,429 + DZA65_RS04510 0.56 +0.1 940,429 + DZA65_RS04510 0.56 +0.4 940,429 + DZA65_RS04510 0.56 -0.0 940,429 + DZA65_RS04510 0.56 +0.4 940,430 - DZA65_RS04510 0.56 +1.1 940,440 - DZA65_RS04510 0.57 +0.8 940,440 - DZA65_RS04510 0.57 -0.6 940,537 + DZA65_RS04510 0.64 +1.1 940,538 - DZA65_RS04510 0.64 -0.9 940,539 + DZA65_RS04510 0.64 +0.0 940,539 + DZA65_RS04510 0.64 +0.5 940,540 - DZA65_RS04510 0.65 +0.5 940,540 - DZA65_RS04510 0.65 -1.2 940,540 - DZA65_RS04510 0.65 -0.6 940,540 - DZA65_RS04510 0.65 -1.2 940,540 - DZA65_RS04510 0.65 -0.0 940,741 - DZA65_RS04510 0.80 -0.3 940,822 - DZA65_RS04510 0.86 +0.3 940,945 + -1.6 940,946 - +0.2 941,020 + +0.4 941,020 + -0.4 941,020 + +0.4 941,021 - +0.1 941,021 - -0.8 941,021 - -0.1 941,021 - -0.7 941,021 - +0.3 941,034 + +2.4 941,035 - +0.0 941,035 - +0.4 941,047 + -0.6 941,047 + -1.9 941,047 + +0.1 941,047 + +1.2 941,047 + +0.3 941,047 + -1.0 941,047 + -0.9 941,047 + -0.0 941,047 + -2.3 941,047 + +0.9 941,047 + -0.8 941,047 + +2.0 941,047 + +1.1 941,047 + -1.3 941,048 - +0.7 941,048 - -1.0 941,048 - -0.1 941,048 - -1.6 941,048 - -0.7 941,064 + +1.1 941,065 - +0.0 941,313 + DZA65_RS04515 0.12 -0.6 941,313 + DZA65_RS04515 0.12 -1.7 941,313 + +1.4 941,313 + DZA65_RS04515 0.12 +0.3 941,313 + DZA65_RS04515 0.12 -1.0 941,313 + DZA65_RS04515 0.12 -1.0 941,313 + DZA65_RS04515 0.12 -0.6 941,314 - DZA65_RS04515 0.12 +0.6 941,314 - DZA65_RS04515 0.12 +0.2 941,314 - DZA65_RS04515 0.12 -0.2 941,314 - DZA65_RS04515 0.12 -0.3 941,329 + DZA65_RS04515 0.14 +0.1 941,329 + +1.6 941,329 + DZA65_RS04515 0.14 -0.1 941,330 - DZA65_RS04515 0.14 -0.6 941,330 - DZA65_RS04515 0.14 -0.2 941,330 - DZA65_RS04515 0.14 +0.6 941,330 - DZA65_RS04515 0.14 +0.4 941,331 + DZA65_RS04515 0.14 -0.6 941,342 - DZA65_RS04515 0.15 -1.9 941,342 - DZA65_RS04515 0.15 +0.1 941,367 + DZA65_RS04515 0.17 +0.0 941,367 + DZA65_RS04515 0.17 +0.3 941,367 + DZA65_RS04515 0.17 -0.8 941,368 - DZA65_RS04515 0.17 +1.0 941,387 + DZA65_RS04515 0.19 +0.1 941,620 + DZA65_RS04515 0.38 +0.2 941,621 - DZA65_RS04515 0.38 +0.4 941,621 - DZA65_RS04515 0.38 -0.5 941,719 + DZA65_RS04515 0.46 +0.0 941,720 - DZA65_RS04515 0.46 +0.9 941,819 - DZA65_RS04515 0.55 -3.0 941,819 - DZA65_RS04515 0.55 -0.1 941,819 - DZA65_RS04515 0.55 -1.1 941,833 + DZA65_RS04515 0.56 -1.2 941,834 - DZA65_RS04515 0.56 +1.7 941,834 - DZA65_RS04515 0.56 -0.8 941,834 - DZA65_RS04515 0.56 -0.7 941,912 + DZA65_RS04515 0.63 -1.9 942,001 + DZA65_RS04515 0.70 -0.4 942,002 - DZA65_RS04515 0.70 -0.3 942,015 + DZA65_RS04515 0.71 -0.3 942,016 - DZA65_RS04515 0.71 -0.3 942,050 - DZA65_RS04515 0.74 -1.5 942,050 - DZA65_RS04515 0.74 -0.4 942,083 + DZA65_RS04515 0.77 +0.5 942,083 + DZA65_RS04515 0.77 -0.2 942,084 - DZA65_RS04515 0.77 -1.6 942,084 - DZA65_RS04515 0.77 -1.0 942,084 - DZA65_RS04515 0.77 +0.8 942,264 + -0.7 942,264 + -0.3 942,264 + +0.4 942,264 + -0.6 942,264 + +0.3 942,264 + -0.6 942,264 + +1.0 942,265 - +0.0 942,265 - +0.1 942,265 - +0.3 942,265 - +0.0 942,265 - +0.4 942,265 - -0.2 942,265 - -1.3 942,265 - -0.1 942,265 - +1.0 942,265 - +2.6 942,265 - -1.5 942,285 - -0.6 942,358 + +0.1 942,370 + -0.4 942,371 - -1.2 942,421 + +0.9 942,434 + -0.2 942,434 + +0.6 942,435 - +0.2 942,438 - -0.1 942,465 + +0.0 942,471 + -2.2 942,473 + -0.7 942,486 - -0.9 942,547 + -2.7 942,547 + +0.4 942,547 + -0.4 942,548 - -1.2 942,556 + +0.4 942,556 + -0.1 942,557 - -0.3 942,557 - -0.1 942,557 - -0.2 942,571 + -0.6 942,678 - +0.0 942,678 - -1.4 942,678 - +0.7 942,678 - -0.3 942,707 + DZA65_RS04520 0.13 +0.4 942,707 + DZA65_RS04520 0.13 +0.6 942,735 + DZA65_RS04520 0.46 -0.7 942,735 + DZA65_RS04520 0.46 +1.0 942,735 + DZA65_RS04520 0.46 -0.7 942,736 - DZA65_RS04520 0.48 -0.2 942,736 - DZA65_RS04520 0.48 +0.2 942,736 - DZA65_RS04520 0.48 +1.4 942,747 + DZA65_RS04520 0.61 +0.4 942,748 - DZA65_RS04520 0.62 -0.1 942,748 - DZA65_RS04520 0.62 -1.8 942,777 + -1.0 942,777 + -0.6 942,777 + -1.6 942,778 - +0.6 942,778 - +0.1 942,778 - -0.4 942,778 - -1.6 942,778 - -0.5 942,778 - -1.2 942,785 + -0.3 942,786 - -1.3 942,799 + +0.4 942,799 + -0.1 942,800 - -0.5 942,802 + -2.4 942,802 + -0.9 942,802 + +0.4 942,802 + +0.8 942,803 - +0.2 942,803 - -1.5 942,803 - -1.6 942,803 - -1.7 942,806 - -2.0 942,806 - +1.0 942,823 - +0.6 942,851 - +2.4 942,864 + +0.4 942,864 + -0.8 942,865 - +0.7 942,892 + -1.1 942,892 + +1.4 942,892 + -0.4 942,893 - +0.3 942,893 - +0.8 942,893 - -0.6 942,893 - +0.8 942,906 + -0.4 942,906 + -0.8 942,906 + +1.1 942,941 + +0.8 942,941 + +0.2 942,941 + -0.2 942,941 + -1.2 942,941 + +0.0 942,941 + +0.4 942,941 + +0.8 942,941 + -0.6 942,942 - +0.1 942,942 - +1.2 942,942 - -2.4 942,942 - -0.5 942,942 - +0.7 942,942 - -1.6 942,942 - +0.2 942,942 - +1.1 942,942 - +1.0 942,942 - -2.6 942,942 - -0.1 942,942 - +0.3 942,942 - -1.4 942,942 - -0.5 943,017 + DZA65_RS04525 0.11 +1.3 943,018 - DZA65_RS04525 0.11 -0.9 943,018 - DZA65_RS04525 0.11 +1.8 943,307 + DZA65_RS04525 0.38 +2.0 943,313 + DZA65_RS04525 0.38 -0.5 943,314 - DZA65_RS04525 0.38 -0.3 943,318 + DZA65_RS04525 0.39 -0.7 943,318 + DZA65_RS04525 0.39 -0.5 943,318 + DZA65_RS04525 0.39 -0.3 943,318 + DZA65_RS04525 0.39 -0.6 943,318 + DZA65_RS04525 0.39 +0.1 943,318 + DZA65_RS04525 0.39 +0.4 943,318 + DZA65_RS04525 0.39 +0.4 943,318 + DZA65_RS04525 0.39 +0.2 943,318 + DZA65_RS04525 0.39 +1.6 943,319 - DZA65_RS04525 0.39 +0.8 943,319 - DZA65_RS04525 0.39 -1.6 943,319 - +2.0 943,319 - DZA65_RS04525 0.39 +0.1 943,319 - DZA65_RS04525 0.39 +0.6 943,319 - DZA65_RS04525 0.39 +0.4 943,319 - DZA65_RS04525 0.39 -0.2
Or see this region's nucleotide sequence