Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04195 and DZA65_RS04205 are separated by 545 nucleotides DZA65_RS04205 and DZA65_RS04215 are separated by 587 nucleotides
DZA65_RS04195: DZA65_RS04195 - hypothetical protein, at 877,964 to 879,616
_RS04195
DZA65_RS04205: DZA65_RS04205 - zinc ribbon domain-containing protein, at 880,162 to 880,665
_RS04205
DZA65_RS04215: DZA65_RS04215 - SsrA-binding protein SmpB, at 881,253 to 881,735
_RS04215
Position (kb) 880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.203 kb on - strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.282 kb on - strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.366 kb on + strand, within DZA65_RS04195 at 879.367 kb on - strand at 879.367 kb on - strand, within DZA65_RS04195 at 879.540 kb on + strand at 879.541 kb on - strand at 879.555 kb on + strand at 879.555 kb on + strand at 879.556 kb on - strand at 879.556 kb on - strand at 879.556 kb on - strand at 879.596 kb on + strand at 879.596 kb on + strand at 879.596 kb on + strand at 879.596 kb on + strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.606 kb on + strand at 879.629 kb on + strand at 879.629 kb on + strand at 879.630 kb on - strand at 879.657 kb on + strand at 879.657 kb on + strand at 879.676 kb on + strand at 879.687 kb on + strand at 879.688 kb on - strand at 879.688 kb on - strand at 879.747 kb on - strand at 879.807 kb on - strand at 879.807 kb on - strand at 879.863 kb on - strand at 879.872 kb on - strand at 879.991 kb on - strand at 880.164 kb on - strand at 880.164 kb on - strand at 880.204 kb on - strand at 880.217 kb on + strand, within DZA65_RS04205 at 880.217 kb on + strand, within DZA65_RS04205 at 880.229 kb on + strand, within DZA65_RS04205 at 880.229 kb on + strand, within DZA65_RS04205 at 880.229 kb on + strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.367 kb on + strand, within DZA65_RS04205 at 880.367 kb on + strand, within DZA65_RS04205 at 880.368 kb on - strand, within DZA65_RS04205 at 880.384 kb on + strand, within DZA65_RS04205 at 880.516 kb on + strand, within DZA65_RS04205 at 880.517 kb on - strand, within DZA65_RS04205 at 880.519 kb on - strand, within DZA65_RS04205 at 880.535 kb on - strand, within DZA65_RS04205 at 880.578 kb on + strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.582 kb on - strand, within DZA65_RS04205 at 880.627 kb on + strand at 880.627 kb on + strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.638 kb on + strand at 880.677 kb on + strand at 880.678 kb on - strand at 880.678 kb on - strand at 880.695 kb on + strand at 880.695 kb on + strand at 880.696 kb on - strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.703 kb on - strand at 880.725 kb on - strand at 880.742 kb on + strand at 880.742 kb on + strand at 880.743 kb on - strand at 880.818 kb on + strand at 880.877 kb on - strand at 880.885 kb on - strand at 880.896 kb on + strand at 880.897 kb on - strand at 881.219 kb on - strand at 881.220 kb on + strand at 881.220 kb on + strand at 881.221 kb on - strand at 881.239 kb on + strand at 881.240 kb on - strand at 881.244 kb on + strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.410 kb on + strand, within DZA65_RS04215 at 881.410 kb on + strand, within DZA65_RS04215 at 881.411 kb on - strand, within DZA65_RS04215 at 881.471 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 879,203 - DZA65_RS04195 0.75 -0.2 879,281 + DZA65_RS04195 0.80 +0.4 879,281 + DZA65_RS04195 0.80 -3.0 879,281 + DZA65_RS04195 0.80 +0.4 879,281 + DZA65_RS04195 0.80 +1.2 879,282 - DZA65_RS04195 0.80 +0.0 879,283 + DZA65_RS04195 0.80 +0.4 879,283 + DZA65_RS04195 0.80 -0.0 879,283 + DZA65_RS04195 0.80 +0.2 879,283 + DZA65_RS04195 0.80 +0.6 879,283 + DZA65_RS04195 0.80 -2.9 879,283 + DZA65_RS04195 0.80 -0.3 879,283 + DZA65_RS04195 0.80 -0.0 879,284 - DZA65_RS04195 0.80 +0.1 879,284 - DZA65_RS04195 0.80 -0.0 879,284 - DZA65_RS04195 0.80 -0.9 879,284 - -0.2 879,284 - DZA65_RS04195 0.80 +0.0 879,284 - DZA65_RS04195 0.80 -0.4 879,284 - DZA65_RS04195 0.80 -0.6 879,284 - DZA65_RS04195 0.80 -0.9 879,308 - DZA65_RS04195 0.81 -0.7 879,308 - DZA65_RS04195 0.81 -1.6 879,308 - DZA65_RS04195 0.81 +0.6 879,308 - DZA65_RS04195 0.81 -2.4 879,342 + DZA65_RS04195 0.83 +0.0 879,342 + DZA65_RS04195 0.83 -0.4 879,342 + DZA65_RS04195 0.83 +0.1 879,342 + DZA65_RS04195 0.83 +0.6 879,343 - DZA65_RS04195 0.83 -0.2 879,343 - DZA65_RS04195 0.83 +1.1 879,343 - DZA65_RS04195 0.83 -2.2 879,343 - DZA65_RS04195 0.83 +0.3 879,366 + DZA65_RS04195 0.85 -0.2 879,367 - +1.2 879,367 - DZA65_RS04195 0.85 -1.2 879,540 + -0.6 879,541 - +0.2 879,555 + +0.1 879,555 + +0.5 879,556 - +0.1 879,556 - +0.8 879,556 - +0.6 879,596 + +1.7 879,596 + -0.6 879,596 + +0.1 879,596 + -0.6 879,597 - -1.2 879,597 - +0.6 879,597 - -1.9 879,597 - +0.5 879,597 - +0.4 879,597 - -0.8 879,597 - -1.2 879,597 - +1.3 879,597 - -0.6 879,597 - -1.0 879,597 - -0.8 879,606 + +0.7 879,629 + -1.3 879,629 + +0.9 879,630 - +1.3 879,657 + -0.6 879,657 + -0.7 879,676 + -0.1 879,687 + -0.2 879,688 - +0.3 879,688 - +0.3 879,747 - -0.6 879,807 - -1.4 879,807 - +0.3 879,863 - +0.5 879,872 - -2.2 879,991 - +0.4 880,164 - -0.4 880,164 - +1.0 880,204 - -1.1 880,217 + DZA65_RS04205 0.11 -2.4 880,217 + DZA65_RS04205 0.11 -1.9 880,229 + DZA65_RS04205 0.13 +0.0 880,229 + DZA65_RS04205 0.13 -0.1 880,229 + DZA65_RS04205 0.13 +0.4 880,230 - DZA65_RS04205 0.13 +1.0 880,230 - DZA65_RS04205 0.13 +1.4 880,230 - DZA65_RS04205 0.13 -1.4 880,230 - DZA65_RS04205 0.13 +0.5 880,230 - DZA65_RS04205 0.13 +1.0 880,230 - DZA65_RS04205 0.13 -1.7 880,230 - DZA65_RS04205 0.13 -0.6 880,230 - DZA65_RS04205 0.13 +1.0 880,367 + DZA65_RS04205 0.41 +0.5 880,367 + DZA65_RS04205 0.41 -0.9 880,368 - DZA65_RS04205 0.41 -1.9 880,384 + DZA65_RS04205 0.44 -0.0 880,516 + DZA65_RS04205 0.70 +0.2 880,517 - DZA65_RS04205 0.70 -0.1 880,519 - DZA65_RS04205 0.71 -0.2 880,535 - DZA65_RS04205 0.74 +1.0 880,578 + DZA65_RS04205 0.83 +1.1 880,579 - DZA65_RS04205 0.83 +0.9 880,579 - DZA65_RS04205 0.83 -0.2 880,581 + DZA65_RS04205 0.83 -0.1 880,581 + DZA65_RS04205 0.83 +0.1 880,581 + DZA65_RS04205 0.83 +1.0 880,582 - DZA65_RS04205 0.83 -0.6 880,627 + +0.4 880,627 + -0.6 880,628 - -0.5 880,628 - -0.3 880,628 - +0.4 880,628 - -1.2 880,628 - -1.2 880,628 - +0.0 880,638 + -1.3 880,677 + -1.6 880,678 - -1.0 880,678 - +0.2 880,695 + +0.3 880,695 + +0.3 880,696 - -0.1 880,699 + -0.5 880,699 + +0.5 880,699 + -1.6 880,699 + +0.0 880,699 + -0.4 880,699 + +0.2 880,700 - +1.9 880,700 - -0.3 880,700 - +0.3 880,700 - -0.6 880,703 - +0.3 880,725 - -0.8 880,742 + -1.1 880,742 + -0.9 880,743 - +0.8 880,818 + +0.4 880,877 - -0.6 880,885 - -0.6 880,896 + -0.2 880,897 - -1.9 881,219 - -0.6 881,220 + +0.2 881,220 + -1.2 881,221 - -2.3 881,239 + +1.4 881,240 - +0.6 881,244 + -0.3 881,245 - -0.3 881,245 - -0.6 881,245 - -0.9 881,245 - +0.5 881,245 - +0.7 881,410 + DZA65_RS04215 0.33 -1.0 881,410 + DZA65_RS04215 0.33 +0.7 881,411 - DZA65_RS04215 0.33 -2.2 881,471 + DZA65_RS04215 0.45 -1.6 881,572 + DZA65_RS04215 0.66 +1.4 881,572 + DZA65_RS04215 0.66 -0.7 881,573 - DZA65_RS04215 0.66 -0.3 881,573 - DZA65_RS04215 0.66 +0.7
Or see this region's nucleotide sequence