Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03975 and DZA65_RS22805 are separated by 7 nucleotides DZA65_RS22805 and DZA65_RS03980 overlap by 4 nucleotides DZA65_RS03980 and DZA65_RS03985 are separated by 528 nucleotides DZA65_RS03985 and DZA65_RS03995 are separated by 441 nucleotides
DZA65_RS03975: DZA65_RS03975 - ash family protein, at 843,039 to 843,395
_RS03975
DZA65_RS22805: DZA65_RS22805 - hypothetical protein, at 843,403 to 843,549
_RS22805
DZA65_RS03980: DZA65_RS03980 - AlpA family transcriptional regulator, at 843,546 to 843,806
_RS03980
DZA65_RS03985: DZA65_RS03985 - phage capsid size determination protein, at 844,335 to 845,081
_RS03985
DZA65_RS03995: DZA65_RS03995 - AAA family ATPase, at 845,523 to 847,271
_RS03995
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.380 kb on + strand at 843.381 kb on - strand at 843.444 kb on - strand, within DZA65_RS22805 at 843.534 kb on + strand, within DZA65_RS22805 at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.680 kb on - strand, within DZA65_RS03980 at 843.699 kb on - strand, within DZA65_RS03980 at 843.859 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.867 kb on - strand at 843.867 kb on - strand at 843.874 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.885 kb on + strand at 843.947 kb on + strand at 843.973 kb on + strand at 843.974 kb on - strand at 843.984 kb on - strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.997 kb on - strand at 844.020 kb on - strand at 844.029 kb on + strand at 844.030 kb on - strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.035 kb on + strand at 844.036 kb on - strand at 844.036 kb on - strand at 844.051 kb on - strand at 844.053 kb on + strand at 844.110 kb on + strand at 844.110 kb on + strand at 844.110 kb on + strand at 844.111 kb on - strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.159 kb on - strand at 844.193 kb on + strand at 844.206 kb on + strand at 844.207 kb on - strand at 844.208 kb on + strand at 844.246 kb on + strand at 844.246 kb on + strand at 844.315 kb on + strand at 844.315 kb on + strand at 844.315 kb on + strand at 844.316 kb on - strand at 844.316 kb on - strand at 844.316 kb on - strand at 844.330 kb on - strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.350 kb on - strand at 844.350 kb on - strand at 844.350 kb on - strand at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.457 kb on + strand, within DZA65_RS03985 at 844.458 kb on - strand, within DZA65_RS03985 at 844.597 kb on + strand, within DZA65_RS03985 at 844.598 kb on - strand, within DZA65_RS03985 at 844.598 kb on - strand at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.776 kb on - strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.844 kb on + strand, within DZA65_RS03985 at 844.922 kb on + strand, within DZA65_RS03985 at 844.923 kb on - strand, within DZA65_RS03985 at 845.091 kb on + strand at 845.091 kb on + strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.122 kb on - strand at 845.133 kb on - strand at 845.133 kb on - strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.195 kb on - strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.251 kb on + strand at 845.251 kb on + strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.278 kb on - strand at 845.290 kb on + strand at 845.296 kb on + strand at 845.296 kb on + strand at 845.306 kb on + strand at 845.338 kb on - strand at 845.351 kb on + strand at 845.352 kb on - strand at 845.353 kb on + strand at 845.362 kb on + strand at 845.362 kb on + strand at 845.363 kb on - strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.379 kb on - strand at 845.387 kb on + strand at 845.387 kb on + strand at 845.388 kb on - strand at 845.418 kb on + strand at 845.419 kb on - strand at 845.419 kb on - strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.482 kb on - strand at 845.531 kb on - strand at 845.562 kb on - strand at 845.633 kb on + strand at 845.679 kb on - strand at 845.896 kb on - strand, within DZA65_RS03995 at 845.909 kb on + strand, within DZA65_RS03995 at 845.910 kb on - strand, within DZA65_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 843,338 + DZA65_RS03975 0.84 -2.4 843,338 + DZA65_RS03975 0.84 -0.1 843,338 + DZA65_RS03975 0.84 -0.7 843,338 + DZA65_RS03975 0.84 -0.4 843,338 + DZA65_RS03975 0.84 -0.4 843,338 + DZA65_RS03975 0.84 -0.4 843,338 + DZA65_RS03975 0.84 +0.8 843,338 + DZA65_RS03975 0.84 -0.3 843,338 + DZA65_RS03975 0.84 +0.5 843,338 + DZA65_RS03975 0.84 +0.4 843,338 + DZA65_RS03975 0.84 -1.0 843,338 + DZA65_RS03975 0.84 -0.0 843,338 + DZA65_RS03975 0.84 +1.0 843,339 - DZA65_RS03975 0.84 -0.3 843,339 - DZA65_RS03975 0.84 -0.4 843,339 - DZA65_RS03975 0.84 -0.6 843,339 - DZA65_RS03975 0.84 +1.0 843,339 - DZA65_RS03975 0.84 -0.5 843,339 - DZA65_RS03975 0.84 +0.4 843,339 - DZA65_RS03975 0.84 +0.2 843,339 - DZA65_RS03975 0.84 +0.2 843,339 - DZA65_RS03975 0.84 +0.9 843,380 + +0.9 843,381 - +0.6 843,444 - DZA65_RS22805 0.28 +1.8 843,534 + DZA65_RS22805 0.89 -0.1 843,538 + +0.2 843,538 + -0.1 843,538 + -1.1 843,538 + -0.0 843,538 + +1.9 843,538 + +1.9 843,538 + +2.3 843,538 + -0.6 843,538 + +0.5 843,538 + -0.0 843,539 - +0.1 843,539 - -0.7 843,539 - -1.0 843,539 - +0.6 843,539 - -0.2 843,539 - -0.7 843,680 - DZA65_RS03980 0.51 -2.4 843,699 - DZA65_RS03980 0.59 +0.7 843,859 + -0.8 843,866 + +0.7 843,866 + +0.0 843,866 + -0.6 843,867 - +0.6 843,867 - -1.1 843,874 + -0.6 843,877 + -1.1 843,877 + -1.1 843,877 + -0.4 843,877 + +0.4 843,877 + +0.5 843,877 + +0.4 843,877 + +0.8 843,878 - -0.2 843,878 - +1.0 843,878 - -0.2 843,878 - +0.7 843,878 - +0.6 843,878 - +0.4 843,878 - -0.4 843,878 - -0.3 843,878 - -0.1 843,885 + -0.0 843,947 + +0.9 843,973 + +0.0 843,974 - +0.8 843,984 - +0.2 843,985 + -1.9 843,985 + -0.2 843,985 + +0.0 843,985 + -0.5 843,985 + +0.4 843,985 + +1.6 843,986 - +0.1 843,986 - -0.6 843,986 - -0.2 843,986 - -1.3 843,986 - +0.8 843,986 - -1.3 843,986 - +0.3 843,997 - -0.2 844,020 - -0.8 844,029 + -2.7 844,030 - -2.1 844,033 + -0.2 844,033 + -2.1 844,033 + +0.4 844,034 - -1.4 844,034 - -1.6 844,034 - -1.9 844,034 - +0.2 844,035 + +0.8 844,036 - +0.7 844,036 - +0.2 844,051 - -1.0 844,053 + +0.4 844,110 + +0.8 844,110 + -0.6 844,110 + -0.6 844,111 - -0.8 844,133 + +0.4 844,133 + +1.0 844,133 + -0.3 844,133 + -0.1 844,133 + -1.6 844,133 + -1.0 844,133 + +0.2 844,133 + +3.5 844,133 + -0.8 844,133 + -0.7 844,134 - -1.7 844,134 - -0.8 844,134 - -1.0 844,134 - +0.3 844,134 - +0.1 844,134 - +1.0 844,134 - +1.8 844,134 - -1.1 844,134 - +0.9 844,134 - -2.4 844,134 - +0.5 844,134 - +0.8 844,159 - -1.1 844,193 + -0.6 844,206 + -0.6 844,207 - -1.9 844,208 + +0.2 844,246 + -0.6 844,246 + +0.1 844,315 + -0.1 844,315 + -0.0 844,315 + +1.3 844,316 - +0.9 844,316 - +0.1 844,316 - +0.4 844,330 - +0.3 844,349 + +0.9 844,349 + -0.0 844,349 + -0.6 844,349 + -1.6 844,349 + +0.4 844,349 + +0.8 844,350 - -1.1 844,350 - +0.2 844,350 - +0.2 844,410 + DZA65_RS03985 0.10 -1.0 844,410 + DZA65_RS03985 0.10 +0.4 844,410 + DZA65_RS03985 0.10 -0.3 844,410 + DZA65_RS03985 0.10 +0.2 844,410 + DZA65_RS03985 0.10 +0.9 844,411 - DZA65_RS03985 0.10 -0.2 844,411 - DZA65_RS03985 0.10 -0.7 844,411 - DZA65_RS03985 0.10 +0.0 844,411 - DZA65_RS03985 0.10 -1.4 844,411 - DZA65_RS03985 0.10 -0.6 844,457 + DZA65_RS03985 0.16 -0.5 844,458 - DZA65_RS03985 0.16 +2.4 844,597 + DZA65_RS03985 0.35 -0.4 844,598 - DZA65_RS03985 0.35 +0.2 844,598 - +0.0 844,632 + DZA65_RS03985 0.40 +0.4 844,632 + DZA65_RS03985 0.40 -1.1 844,632 + DZA65_RS03985 0.40 +0.2 844,632 + DZA65_RS03985 0.40 +0.5 844,633 - DZA65_RS03985 0.40 +0.1 844,633 - DZA65_RS03985 0.40 +0.4 844,712 + DZA65_RS03985 0.50 -1.6 844,712 + DZA65_RS03985 0.50 +0.9 844,712 + DZA65_RS03985 0.50 +0.0 844,712 + DZA65_RS03985 0.50 -1.1 844,713 - DZA65_RS03985 0.51 +1.3 844,713 - DZA65_RS03985 0.51 +1.0 844,713 - DZA65_RS03985 0.51 +0.9 844,756 + DZA65_RS03985 0.56 -1.6 844,756 + DZA65_RS03985 0.56 +1.1 844,756 + DZA65_RS03985 0.56 -0.6 844,776 - DZA65_RS03985 0.59 +2.6 844,781 + DZA65_RS03985 0.60 +0.1 844,781 + DZA65_RS03985 0.60 -1.7 844,807 + DZA65_RS03985 0.63 +0.9 844,807 + DZA65_RS03985 0.63 -0.6 844,844 + DZA65_RS03985 0.68 +0.4 844,922 + DZA65_RS03985 0.79 +0.4 844,923 - DZA65_RS03985 0.79 +1.0 845,091 + -2.1 845,091 + -0.8 845,092 - +1.0 845,092 - -0.0 845,092 - -0.4 845,092 - -1.6 845,092 - -0.6 845,092 - -1.6 845,092 - -0.7 845,092 - -1.4 845,092 - -1.6 845,092 - -0.0 845,092 - +0.4 845,092 - +0.7 845,092 - -0.4 845,093 + +0.0 845,093 + -0.7 845,093 + -1.4 845,093 + +0.3 845,093 + -0.4 845,094 - +0.2 845,094 - -0.4 845,094 - +0.9 845,094 - -0.4 845,094 - -0.9 845,121 + +0.8 845,121 + +0.3 845,121 + -1.0 845,122 - +0.0 845,133 - -1.6 845,133 - +0.4 845,194 + +0.2 845,194 + -1.6 845,194 + -0.4 845,195 - -0.9 845,198 + -0.3 845,198 + +1.1 845,198 + -0.9 845,198 + +1.3 845,199 - -0.2 845,199 - +0.4 845,199 - -0.1 845,199 - -0.6 845,251 + +0.2 845,251 + +0.2 845,252 - +0.0 845,252 - -0.3 845,252 - +0.3 845,252 - -0.0 845,252 - -0.0 845,278 - -1.4 845,290 + +0.4 845,296 + +0.4 845,296 + +1.4 845,306 + +0.7 845,338 - +0.1 845,351 + +1.0 845,352 - -0.7 845,353 + -0.3 845,362 + -1.1 845,362 + +0.9 845,363 - +0.9 845,378 + +0.3 845,378 + -0.3 845,378 + -2.0 845,378 + +0.3 845,379 - -1.1 845,387 + +0.4 845,387 + +0.4 845,388 - -1.1 845,418 + -0.3 845,419 - +0.4 845,419 - -1.3 845,479 + -0.1 845,479 + -0.2 845,479 + -0.1 845,482 - +0.1 845,531 - +0.3 845,562 - +0.9 845,633 + +2.8 845,679 - +1.7 845,896 - DZA65_RS03995 0.21 +0.2 845,909 + DZA65_RS03995 0.22 -0.5 845,910 - DZA65_RS03995 0.22 +0.7
Or see this region's nucleotide sequence