Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03565 and DZA65_RS03570 overlap by 10 nucleotides DZA65_RS03570 and DZA65_RS03575 are separated by 91 nucleotides DZA65_RS03575 and DZA65_RS03580 are separated by 0 nucleotides
DZA65_RS03565: DZA65_RS03565 - HNH endonuclease, at 750,094 to 750,591
_RS03565
DZA65_RS03570: DZA65_RS03570 - hypothetical protein, at 750,582 to 750,998
_RS03570
DZA65_RS03575: DZA65_RS03575 - hypothetical protein, at 751,090 to 751,509
_RS03575
DZA65_RS03580: DZA65_RS03580 - tyrosine-type recombinase/integrase, at 751,510 to 752,718
_RS03580
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.259 kb on + strand, within DZA65_RS03565 at 750.274 kb on - strand, within DZA65_RS03565 at 750.276 kb on + strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand at 750.318 kb on + strand, within DZA65_RS03565 at 750.319 kb on - strand, within DZA65_RS03565 at 750.340 kb on - strand, within DZA65_RS03565 at 750.348 kb on + strand, within DZA65_RS03565 at 750.372 kb on - strand, within DZA65_RS03565 at 750.424 kb on - strand, within DZA65_RS03565 at 750.442 kb on - strand, within DZA65_RS03565 at 750.455 kb on + strand, within DZA65_RS03565 at 750.466 kb on + strand, within DZA65_RS03565 at 750.589 kb on + strand at 750.602 kb on + strand at 750.603 kb on - strand at 750.701 kb on - strand, within DZA65_RS03570 at 750.704 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.867 kb on + strand, within DZA65_RS03570 at 750.868 kb on - strand, within DZA65_RS03570 at 750.871 kb on + strand, within DZA65_RS03570 at 750.872 kb on - strand, within DZA65_RS03570 at 750.874 kb on + strand, within DZA65_RS03570 at 750.915 kb on + strand, within DZA65_RS03570 at 750.916 kb on - strand, within DZA65_RS03570 at 750.920 kb on + strand, within DZA65_RS03570 at 750.924 kb on + strand, within DZA65_RS03570 at 750.927 kb on + strand, within DZA65_RS03570 at 750.928 kb on - strand, within DZA65_RS03570 at 750.966 kb on - strand at 751.021 kb on + strand at 751.021 kb on + strand at 751.048 kb on + strand at 751.057 kb on + strand at 751.057 kb on + strand at 751.057 kb on + strand at 751.058 kb on - strand at 751.058 kb on - strand at 751.086 kb on + strand at 751.086 kb on + strand at 751.156 kb on + strand, within DZA65_RS03575 at 751.168 kb on + strand, within DZA65_RS03575 at 751.169 kb on - strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.175 kb on - strand, within DZA65_RS03575 at 751.175 kb on - strand, within DZA65_RS03575 at 751.175 kb on - strand at 751.175 kb on - strand, within DZA65_RS03575 at 751.175 kb on - strand, within DZA65_RS03575 at 751.177 kb on - strand, within DZA65_RS03575 at 751.177 kb on - strand, within DZA65_RS03575 at 751.287 kb on + strand, within DZA65_RS03575 at 751.288 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.306 kb on + strand, within DZA65_RS03575 at 751.307 kb on - strand, within DZA65_RS03575 at 751.315 kb on + strand, within DZA65_RS03575 at 751.316 kb on - strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.346 kb on + strand, within DZA65_RS03575 at 751.347 kb on - strand, within DZA65_RS03575 at 751.347 kb on - strand, within DZA65_RS03575 at 751.377 kb on + strand, within DZA65_RS03575 at 751.377 kb on + strand, within DZA65_RS03575 at 751.382 kb on - strand, within DZA65_RS03575 at 751.389 kb on + strand, within DZA65_RS03575 at 751.389 kb on + strand, within DZA65_RS03575 at 751.390 kb on - strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.432 kb on - strand, within DZA65_RS03575 at 751.435 kb on - strand, within DZA65_RS03575 at 751.440 kb on + strand, within DZA65_RS03575 at 751.440 kb on + strand, within DZA65_RS03575 at 751.451 kb on + strand at 751.457 kb on + strand, within DZA65_RS03575 at 751.457 kb on + strand, within DZA65_RS03575 at 751.469 kb on + strand at 751.498 kb on - strand at 751.530 kb on - strand at 751.530 kb on - strand at 751.530 kb on - strand at 751.540 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.571 kb on - strand at 751.590 kb on - strand at 751.590 kb on - strand at 751.644 kb on + strand, within DZA65_RS03580 at 751.644 kb on + strand, within DZA65_RS03580 at 751.698 kb on + strand, within DZA65_RS03580 at 751.699 kb on - strand, within DZA65_RS03580 at 751.729 kb on + strand, within DZA65_RS03580 at 751.737 kb on + strand, within DZA65_RS03580 at 751.738 kb on - strand, within DZA65_RS03580 at 751.738 kb on - strand, within DZA65_RS03580 at 751.766 kb on + strand, within DZA65_RS03580 at 751.767 kb on - strand, within DZA65_RS03580 at 751.767 kb on - strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.831 kb on + strand, within DZA65_RS03580 at 751.831 kb on + strand, within DZA65_RS03580 at 751.832 kb on - strand, within DZA65_RS03580 at 751.832 kb on - strand, within DZA65_RS03580 at 751.879 kb on + strand, within DZA65_RS03580 at 751.880 kb on - strand, within DZA65_RS03580 at 751.923 kb on + strand, within DZA65_RS03580 at 751.928 kb on - strand, within DZA65_RS03580 at 751.928 kb on - strand, within DZA65_RS03580 at 751.947 kb on + strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 752.007 kb on + strand, within DZA65_RS03580 at 752.007 kb on + strand, within DZA65_RS03580 at 752.007 kb on + strand, within DZA65_RS03580 at 752.041 kb on + strand, within DZA65_RS03580 at 752.041 kb on + strand, within DZA65_RS03580 at 752.041 kb on + strand, within DZA65_RS03580 at 752.042 kb on - strand, within DZA65_RS03580 at 752.059 kb on - strand, within DZA65_RS03580 at 752.061 kb on + strand, within DZA65_RS03580 at 752.061 kb on + strand, within DZA65_RS03580 at 752.075 kb on - strand, within DZA65_RS03580 at 752.158 kb on + strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.161 kb on - strand, within DZA65_RS03580 at 752.161 kb on - strand, within DZA65_RS03580 at 752.169 kb on - strand, within DZA65_RS03580 at 752.183 kb on + strand, within DZA65_RS03580 at 752.184 kb on - strand, within DZA65_RS03580 at 752.189 kb on + strand, within DZA65_RS03580 at 752.189 kb on + strand, within DZA65_RS03580 at 752.190 kb on - strand, within DZA65_RS03580 at 752.190 kb on - strand, within DZA65_RS03580 at 752.190 kb on - strand, within DZA65_RS03580 at 752.213 kb on + strand, within DZA65_RS03580 at 752.213 kb on + strand, within DZA65_RS03580 at 752.214 kb on - strand, within DZA65_RS03580 at 752.214 kb on - strand, within DZA65_RS03580 at 752.259 kb on + strand, within DZA65_RS03580 at 752.260 kb on - strand, within DZA65_RS03580 at 752.293 kb on + strand, within DZA65_RS03580 at 752.293 kb on + strand, within DZA65_RS03580 at 752.293 kb on + strand, within DZA65_RS03580 at 752.294 kb on - strand, within DZA65_RS03580 at 752.301 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.356 kb on + strand, within DZA65_RS03580 at 752.357 kb on - strand, within DZA65_RS03580 at 752.384 kb on + strand, within DZA65_RS03580 at 752.385 kb on - strand, within DZA65_RS03580 at 752.396 kb on + strand, within DZA65_RS03580 at 752.396 kb on + strand, within DZA65_RS03580 at 752.397 kb on - strand, within DZA65_RS03580 at 752.450 kb on - strand, within DZA65_RS03580 at 752.450 kb on - strand, within DZA65_RS03580 at 752.458 kb on + strand, within DZA65_RS03580 at 752.459 kb on - strand, within DZA65_RS03580 at 752.488 kb on + strand, within DZA65_RS03580 at 752.488 kb on + strand, within DZA65_RS03580 at 752.492 kb on - strand, within DZA65_RS03580 at 752.492 kb on - strand, within DZA65_RS03580 at 752.494 kb on + strand, within DZA65_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 750,259 + DZA65_RS03565 0.33 +0.2 750,274 - DZA65_RS03565 0.36 +0.3 750,276 + DZA65_RS03565 0.37 +0.5 750,277 - DZA65_RS03565 0.37 -0.1 750,277 - DZA65_RS03565 0.37 +0.2 750,278 + DZA65_RS03565 0.37 -0.4 750,278 + DZA65_RS03565 0.37 -0.8 750,278 + -2.4 750,318 + DZA65_RS03565 0.45 -2.4 750,319 - DZA65_RS03565 0.45 -0.1 750,340 - DZA65_RS03565 0.49 +0.0 750,348 + DZA65_RS03565 0.51 +0.5 750,372 - DZA65_RS03565 0.56 -2.7 750,424 - DZA65_RS03565 0.66 -0.5 750,442 - DZA65_RS03565 0.70 +0.5 750,455 + DZA65_RS03565 0.72 -0.1 750,466 + DZA65_RS03565 0.75 +0.5 750,589 + -0.5 750,602 + +0.2 750,603 - +0.2 750,701 - DZA65_RS03570 0.29 -0.3 750,704 + DZA65_RS03570 0.29 -0.5 750,802 + DZA65_RS03570 0.53 +1.4 750,802 + DZA65_RS03570 0.53 -0.1 750,867 + DZA65_RS03570 0.68 -1.2 750,868 - DZA65_RS03570 0.69 -0.2 750,871 + DZA65_RS03570 0.69 +0.5 750,872 - DZA65_RS03570 0.70 -0.5 750,874 + DZA65_RS03570 0.70 +0.2 750,915 + DZA65_RS03570 0.80 +0.8 750,916 - DZA65_RS03570 0.80 -0.4 750,920 + DZA65_RS03570 0.81 -0.1 750,924 + DZA65_RS03570 0.82 -0.8 750,927 + DZA65_RS03570 0.83 -0.9 750,928 - DZA65_RS03570 0.83 +0.2 750,966 - -0.9 751,021 + -0.6 751,021 + +1.2 751,048 + -0.7 751,057 + +0.2 751,057 + -0.4 751,057 + -0.4 751,058 - +1.2 751,058 - -1.0 751,086 + -0.2 751,086 + +0.8 751,156 + DZA65_RS03575 0.16 +0.0 751,168 + DZA65_RS03575 0.19 +0.7 751,169 - DZA65_RS03575 0.19 +0.4 751,174 + DZA65_RS03575 0.20 -1.5 751,174 + DZA65_RS03575 0.20 -0.1 751,174 + DZA65_RS03575 0.20 +0.9 751,174 + DZA65_RS03575 0.20 -0.7 751,174 + DZA65_RS03575 0.20 -0.5 751,174 + DZA65_RS03575 0.20 +0.2 751,174 + DZA65_RS03575 0.20 +2.3 751,175 - DZA65_RS03575 0.20 -1.4 751,175 - DZA65_RS03575 0.20 +0.3 751,175 - +1.5 751,175 - DZA65_RS03575 0.20 +1.0 751,175 - DZA65_RS03575 0.20 -0.3 751,177 - DZA65_RS03575 0.21 +1.5 751,177 - DZA65_RS03575 0.21 -0.0 751,287 + DZA65_RS03575 0.47 +1.0 751,288 - DZA65_RS03575 0.47 -0.1 751,292 - DZA65_RS03575 0.48 +0.6 751,292 - DZA65_RS03575 0.48 -1.1 751,292 - DZA65_RS03575 0.48 -1.9 751,292 - DZA65_RS03575 0.48 -2.5 751,306 + DZA65_RS03575 0.51 +0.4 751,307 - DZA65_RS03575 0.52 -0.4 751,315 + DZA65_RS03575 0.54 -1.3 751,316 - DZA65_RS03575 0.54 -0.3 751,330 + DZA65_RS03575 0.57 +0.2 751,330 + DZA65_RS03575 0.57 -0.0 751,330 + DZA65_RS03575 0.57 +0.5 751,330 + DZA65_RS03575 0.57 +0.5 751,346 + DZA65_RS03575 0.61 +0.9 751,347 - DZA65_RS03575 0.61 +1.3 751,347 - DZA65_RS03575 0.61 +0.3 751,377 + DZA65_RS03575 0.68 -0.1 751,377 + DZA65_RS03575 0.68 +1.1 751,382 - DZA65_RS03575 0.70 +0.3 751,389 + DZA65_RS03575 0.71 -0.4 751,389 + DZA65_RS03575 0.71 +0.5 751,390 - DZA65_RS03575 0.71 -0.2 751,431 + DZA65_RS03575 0.81 +0.5 751,431 + DZA65_RS03575 0.81 -0.5 751,431 + DZA65_RS03575 0.81 -0.5 751,431 + DZA65_RS03575 0.81 +0.3 751,431 + DZA65_RS03575 0.81 -0.1 751,432 - DZA65_RS03575 0.81 +0.2 751,435 - DZA65_RS03575 0.82 +0.8 751,440 + DZA65_RS03575 0.83 -1.5 751,440 + DZA65_RS03575 0.83 +1.7 751,451 + -1.5 751,457 + DZA65_RS03575 0.87 -0.4 751,457 + DZA65_RS03575 0.87 -0.9 751,469 + -0.3 751,498 - +0.3 751,530 - -1.9 751,530 - -0.7 751,530 - -0.2 751,540 + -0.7 751,553 + -1.2 751,553 + +0.3 751,553 + -0.6 751,553 + +0.2 751,553 + +0.2 751,553 + +0.0 751,571 - +0.7 751,590 - +1.3 751,590 - -0.4 751,644 + DZA65_RS03580 0.11 -1.1 751,644 + DZA65_RS03580 0.11 -0.5 751,698 + DZA65_RS03580 0.16 +1.0 751,699 - DZA65_RS03580 0.16 -2.9 751,729 + DZA65_RS03580 0.18 +0.2 751,737 + DZA65_RS03580 0.19 +0.5 751,738 - DZA65_RS03580 0.19 -1.0 751,738 - DZA65_RS03580 0.19 -1.0 751,766 + DZA65_RS03580 0.21 -0.8 751,767 - DZA65_RS03580 0.21 -0.1 751,767 - DZA65_RS03580 0.21 +0.7 751,823 + DZA65_RS03580 0.26 -2.4 751,823 + DZA65_RS03580 0.26 +2.5 751,823 + DZA65_RS03580 0.26 +0.2 751,823 + DZA65_RS03580 0.26 +0.1 751,823 + DZA65_RS03580 0.26 +0.4 751,823 + DZA65_RS03580 0.26 +0.8 751,824 - DZA65_RS03580 0.26 -0.7 751,824 - DZA65_RS03580 0.26 -0.1 751,824 - DZA65_RS03580 0.26 -2.7 751,824 - DZA65_RS03580 0.26 +0.5 751,824 - DZA65_RS03580 0.26 +0.6 751,831 + DZA65_RS03580 0.27 -0.5 751,831 + DZA65_RS03580 0.27 -0.5 751,832 - DZA65_RS03580 0.27 -3.5 751,832 - DZA65_RS03580 0.27 +0.3 751,879 + DZA65_RS03580 0.31 +0.6 751,880 - DZA65_RS03580 0.31 -0.8 751,923 + DZA65_RS03580 0.34 +0.3 751,928 - DZA65_RS03580 0.35 -1.1 751,928 - DZA65_RS03580 0.35 +1.2 751,947 + DZA65_RS03580 0.36 -1.5 751,948 - DZA65_RS03580 0.36 +0.9 751,948 - DZA65_RS03580 0.36 -0.4 751,948 - DZA65_RS03580 0.36 +0.2 751,948 - DZA65_RS03580 0.36 +0.6 752,007 + DZA65_RS03580 0.41 +0.2 752,007 + DZA65_RS03580 0.41 -0.0 752,007 + DZA65_RS03580 0.41 +0.5 752,041 + DZA65_RS03580 0.44 +0.0 752,041 + DZA65_RS03580 0.44 -0.1 752,041 + DZA65_RS03580 0.44 +0.0 752,042 - DZA65_RS03580 0.44 -0.2 752,059 - DZA65_RS03580 0.45 +0.5 752,061 + DZA65_RS03580 0.46 +0.1 752,061 + DZA65_RS03580 0.46 +1.0 752,075 - DZA65_RS03580 0.47 +0.9 752,158 + DZA65_RS03580 0.54 +0.3 752,159 - DZA65_RS03580 0.54 -0.1 752,159 - DZA65_RS03580 0.54 +0.5 752,159 - DZA65_RS03580 0.54 -0.7 752,159 - DZA65_RS03580 0.54 -1.0 752,159 - DZA65_RS03580 0.54 -1.7 752,159 - DZA65_RS03580 0.54 -0.3 752,160 + DZA65_RS03580 0.54 +0.6 752,160 + DZA65_RS03580 0.54 +0.3 752,160 + DZA65_RS03580 0.54 -1.1 752,160 + DZA65_RS03580 0.54 +1.0 752,160 + DZA65_RS03580 0.54 -0.8 752,160 + DZA65_RS03580 0.54 -0.2 752,161 - DZA65_RS03580 0.54 -0.0 752,161 - DZA65_RS03580 0.54 +0.2 752,169 - DZA65_RS03580 0.55 -0.2 752,183 + DZA65_RS03580 0.56 -0.2 752,184 - DZA65_RS03580 0.56 -1.7 752,189 + DZA65_RS03580 0.56 +0.5 752,189 + DZA65_RS03580 0.56 +0.0 752,190 - DZA65_RS03580 0.56 +1.2 752,190 - DZA65_RS03580 0.56 +0.0 752,190 - DZA65_RS03580 0.56 -1.4 752,213 + DZA65_RS03580 0.58 +0.2 752,213 + DZA65_RS03580 0.58 -0.2 752,214 - DZA65_RS03580 0.58 -0.1 752,214 - DZA65_RS03580 0.58 +0.5 752,259 + DZA65_RS03580 0.62 -0.3 752,260 - DZA65_RS03580 0.62 -1.0 752,293 + DZA65_RS03580 0.65 +1.0 752,293 + DZA65_RS03580 0.65 -1.5 752,293 + DZA65_RS03580 0.65 -0.5 752,294 - DZA65_RS03580 0.65 -0.1 752,301 + DZA65_RS03580 0.65 +0.5 752,314 + DZA65_RS03580 0.67 +0.6 752,314 + DZA65_RS03580 0.67 -2.4 752,314 + DZA65_RS03580 0.67 -0.3 752,314 + DZA65_RS03580 0.67 -0.5 752,314 + DZA65_RS03580 0.67 -0.9 752,356 + DZA65_RS03580 0.70 +0.1 752,357 - DZA65_RS03580 0.70 -1.9 752,384 + DZA65_RS03580 0.72 +1.6 752,385 - DZA65_RS03580 0.72 -0.1 752,396 + DZA65_RS03580 0.73 +0.1 752,396 + DZA65_RS03580 0.73 +0.2 752,397 - DZA65_RS03580 0.73 -0.9 752,450 - DZA65_RS03580 0.78 +0.3 752,450 - DZA65_RS03580 0.78 +0.2 752,458 + DZA65_RS03580 0.78 -0.4 752,459 - DZA65_RS03580 0.78 -0.4 752,488 + DZA65_RS03580 0.81 -0.8 752,488 + DZA65_RS03580 0.81 +0.1 752,492 - DZA65_RS03580 0.81 -0.4 752,492 - DZA65_RS03580 0.81 -0.4 752,494 + DZA65_RS03580 0.81 -1.0
Or see this region's nucleotide sequence