Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03500 and DZA65_RS03505 are separated by 9 nucleotides DZA65_RS03505 and DZA65_RS03510 are separated by 147 nucleotides DZA65_RS03510 and DZA65_RS03515 are separated by 85 nucleotides
DZA65_RS03500: DZA65_RS03500 - peptide chain release factor 2, at 739,633 to 740,731
_RS03500
DZA65_RS03505: DZA65_RS03505 - lysine--tRNA ligase, at 740,741 to 742,258
_RS03505
DZA65_RS03510: DZA65_RS03510 - LysE family transporter, at 742,406 to 743,077
_RS03510
DZA65_RS03515: DZA65_RS03515 - tRNA-Gly, at 743,163 to 743,236
_RS03515
Position (kb) 740
741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2 at 742.256 kb on + strand at 742.257 kb on - strand at 742.271 kb on + strand at 742.271 kb on + strand at 742.271 kb on + strand at 742.271 kb on + strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.272 kb on - strand at 742.273 kb on + strand at 742.274 kb on - strand at 742.274 kb on - strand at 742.324 kb on + strand at 742.324 kb on + strand at 742.324 kb on + strand at 742.324 kb on + strand at 742.325 kb on - strand at 742.325 kb on - strand at 742.325 kb on - strand at 742.325 kb on - strand at 742.329 kb on + strand at 742.329 kb on + strand at 742.329 kb on + strand at 742.367 kb on + strand at 742.367 kb on + strand at 742.367 kb on + strand at 742.367 kb on + strand at 742.367 kb on + strand at 742.368 kb on - strand at 742.368 kb on - strand at 742.368 kb on - strand at 742.368 kb on - strand at 742.371 kb on + strand at 742.371 kb on + strand at 742.372 kb on - strand at 742.372 kb on - strand at 742.382 kb on + strand at 742.383 kb on - strand at 742.394 kb on - strand at 742.394 kb on - strand at 742.394 kb on - strand at 742.405 kb on + strand at 742.406 kb on - strand at 742.484 kb on - strand, within DZA65_RS03510 at 742.484 kb on - strand, within DZA65_RS03510 at 742.486 kb on + strand, within DZA65_RS03510 at 742.486 kb on + strand, within DZA65_RS03510 at 742.486 kb on + strand, within DZA65_RS03510 at 742.486 kb on + strand, within DZA65_RS03510 at 742.487 kb on - strand, within DZA65_RS03510 at 742.487 kb on - strand, within DZA65_RS03510 at 742.525 kb on + strand, within DZA65_RS03510 at 742.559 kb on + strand, within DZA65_RS03510 at 742.560 kb on - strand, within DZA65_RS03510 at 742.560 kb on - strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.601 kb on + strand, within DZA65_RS03510 at 742.602 kb on - strand, within DZA65_RS03510 at 742.602 kb on - strand, within DZA65_RS03510 at 742.603 kb on + strand, within DZA65_RS03510 at 742.603 kb on + strand, within DZA65_RS03510 at 742.603 kb on + strand, within DZA65_RS03510 at 742.603 kb on + strand, within DZA65_RS03510 at 742.604 kb on - strand, within DZA65_RS03510 at 742.604 kb on - strand, within DZA65_RS03510 at 742.604 kb on - strand, within DZA65_RS03510 at 742.624 kb on - strand, within DZA65_RS03510 at 742.644 kb on + strand, within DZA65_RS03510 at 742.644 kb on + strand, within DZA65_RS03510 at 742.644 kb on + strand, within DZA65_RS03510 at 742.644 kb on + strand, within DZA65_RS03510 at 742.644 kb on + strand, within DZA65_RS03510 at 742.645 kb on - strand, within DZA65_RS03510 at 742.645 kb on - strand, within DZA65_RS03510 at 742.645 kb on - strand, within DZA65_RS03510 at 742.732 kb on - strand, within DZA65_RS03510 at 742.772 kb on - strand, within DZA65_RS03510 at 742.878 kb on + strand, within DZA65_RS03510 at 742.879 kb on - strand, within DZA65_RS03510 at 742.879 kb on - strand, within DZA65_RS03510 at 742.879 kb on - strand, within DZA65_RS03510 at 742.879 kb on - strand, within DZA65_RS03510 at 742.879 kb on - strand, within DZA65_RS03510 at 742.941 kb on + strand, within DZA65_RS03510 at 742.941 kb on + strand, within DZA65_RS03510 at 742.985 kb on + strand, within DZA65_RS03510 at 742.985 kb on + strand, within DZA65_RS03510 at 742.986 kb on - strand, within DZA65_RS03510 at 743.011 kb on - strand at 743.011 kb on - strand at 743.011 kb on - strand at 743.011 kb on - strand at 743.011 kb on - strand at 743.089 kb on - strand at 743.089 kb on - strand at 743.089 kb on - strand at 743.089 kb on - strand at 743.141 kb on + strand at 743.141 kb on + strand at 743.141 kb on + strand at 743.141 kb on + strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.143 kb on + strand at 743.143 kb on + strand at 743.143 kb on + strand at 743.144 kb on - strand at 743.144 kb on - strand at 743.144 kb on - strand at 743.182 kb on - strand, within DZA65_RS03515 at 743.204 kb on + strand, within DZA65_RS03515 at 743.204 kb on + strand, within DZA65_RS03515 at 743.204 kb on + strand, within DZA65_RS03515 at 743.205 kb on - strand, within DZA65_RS03515 at 743.205 kb on - strand, within DZA65_RS03515 at 743.206 kb on + strand, within DZA65_RS03515 at 743.206 kb on + strand, within DZA65_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 742,256 + -1.4 742,257 - -0.1 742,271 + -2.5 742,271 + -0.8 742,271 + -0.5 742,271 + -1.0 742,272 - +0.9 742,272 - -0.8 742,272 - -0.1 742,272 - -0.8 742,272 - +0.3 742,272 - -0.8 742,272 - -0.2 742,272 - -1.5 742,272 - +0.6 742,273 + -0.5 742,274 - -0.4 742,274 - +2.3 742,324 + +0.8 742,324 + -0.5 742,324 + -0.5 742,324 + +0.5 742,325 - -0.9 742,325 - +1.2 742,325 - +1.0 742,325 - -1.0 742,329 + -1.1 742,329 + -0.3 742,329 + +0.0 742,367 + +0.3 742,367 + -0.2 742,367 + +0.5 742,367 + -1.9 742,367 + +1.5 742,368 - -0.3 742,368 - +0.0 742,368 - -0.1 742,368 - -0.3 742,371 + -0.6 742,371 + -0.2 742,372 - -1.0 742,372 - +0.8 742,382 + -1.5 742,383 - +0.1 742,394 - -1.1 742,394 - +0.7 742,394 - -0.0 742,405 + -1.9 742,406 - -0.8 742,484 - DZA65_RS03510 0.12 +1.0 742,484 - DZA65_RS03510 0.12 -1.1 742,486 + DZA65_RS03510 0.12 -0.4 742,486 + DZA65_RS03510 0.12 +0.0 742,486 + DZA65_RS03510 0.12 -1.9 742,486 + DZA65_RS03510 0.12 -0.3 742,487 - DZA65_RS03510 0.12 -0.9 742,487 - DZA65_RS03510 0.12 +0.3 742,525 + DZA65_RS03510 0.18 +1.2 742,559 + DZA65_RS03510 0.23 +0.2 742,560 - DZA65_RS03510 0.23 +0.3 742,560 - DZA65_RS03510 0.23 -1.9 742,601 + DZA65_RS03510 0.29 -0.5 742,601 + DZA65_RS03510 0.29 -0.1 742,601 + DZA65_RS03510 0.29 -0.7 742,601 + DZA65_RS03510 0.29 -0.2 742,601 + DZA65_RS03510 0.29 +0.1 742,601 + DZA65_RS03510 0.29 -1.0 742,601 + DZA65_RS03510 0.29 +0.5 742,602 - DZA65_RS03510 0.29 +2.0 742,602 - DZA65_RS03510 0.29 -2.5 742,603 + DZA65_RS03510 0.29 -0.5 742,603 + DZA65_RS03510 0.29 -1.5 742,603 + DZA65_RS03510 0.29 -0.8 742,603 + DZA65_RS03510 0.29 -1.9 742,604 - DZA65_RS03510 0.29 -0.1 742,604 - DZA65_RS03510 0.29 +0.3 742,604 - DZA65_RS03510 0.29 +0.5 742,624 - DZA65_RS03510 0.32 -0.4 742,644 + DZA65_RS03510 0.35 +0.0 742,644 + DZA65_RS03510 0.35 +1.3 742,644 + DZA65_RS03510 0.35 +1.5 742,644 + DZA65_RS03510 0.35 -0.8 742,644 + DZA65_RS03510 0.35 -2.1 742,645 - DZA65_RS03510 0.36 +1.5 742,645 - DZA65_RS03510 0.36 +0.9 742,645 - DZA65_RS03510 0.36 +0.7 742,732 - DZA65_RS03510 0.49 +0.5 742,772 - DZA65_RS03510 0.54 +1.5 742,878 + DZA65_RS03510 0.70 +0.1 742,879 - DZA65_RS03510 0.70 -0.2 742,879 - DZA65_RS03510 0.70 -0.4 742,879 - DZA65_RS03510 0.70 -0.2 742,879 - DZA65_RS03510 0.70 +0.4 742,879 - DZA65_RS03510 0.70 +0.8 742,941 + DZA65_RS03510 0.80 +0.6 742,941 + DZA65_RS03510 0.80 +0.8 742,985 + DZA65_RS03510 0.86 -0.5 742,985 + DZA65_RS03510 0.86 +1.5 742,986 - DZA65_RS03510 0.86 +2.0 743,011 - +0.8 743,011 - -0.6 743,011 - -0.3 743,011 - -0.2 743,011 - +0.7 743,089 - -1.0 743,089 - -1.0 743,089 - -0.4 743,089 - +0.6 743,141 + -0.4 743,141 + -0.4 743,141 + +1.0 743,141 + +1.2 743,142 - +0.2 743,142 - -1.7 743,142 - -0.4 743,142 - -0.5 743,142 - -0.1 743,142 - -0.3 743,142 - -0.2 743,142 - +0.5 743,143 + +0.5 743,143 + -0.3 743,143 + +1.5 743,144 - +0.8 743,144 - -0.2 743,144 - -0.9 743,182 - DZA65_RS03515 0.26 +0.9 743,204 + DZA65_RS03515 0.55 +0.7 743,204 + DZA65_RS03515 0.55 +1.8 743,204 + DZA65_RS03515 0.55 -0.0 743,205 - DZA65_RS03515 0.57 +0.5 743,205 - DZA65_RS03515 0.57 +0.3 743,206 + DZA65_RS03515 0.58 -0.0 743,206 + DZA65_RS03515 0.58 +0.5
Or see this region's nucleotide sequence