Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03480 and DZA65_RS03485 are separated by 262 nucleotides DZA65_RS03485 and DZA65_RS03490 are separated by 89 nucleotides DZA65_RS03490 and DZA65_RS03495 are separated by 23 nucleotides
DZA65_RS03480: DZA65_RS03480 - MHS family MFS transporter, at 734,419 to 735,744
_RS03480
DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906
_RS03485
DZA65_RS03490: DZA65_RS03490 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 736,996 to 737,712
_RS03490
DZA65_RS03495: DZA65_RS03495 - single-stranded-DNA-specific exonuclease RecJ, at 737,736 to 739,466
_RS03495
Position (kb) 736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.091 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.257 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.626 kb on + strand at 735.692 kb on - strand at 735.720 kb on + strand at 735.720 kb on + strand at 735.744 kb on + strand at 735.744 kb on + strand at 735.745 kb on - strand at 735.745 kb on - strand at 735.762 kb on + strand at 735.763 kb on - strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.867 kb on - strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.876 kb on + strand at 735.939 kb on + strand at 735.940 kb on - strand at 735.950 kb on + strand at 735.951 kb on - strand at 735.951 kb on - strand at 735.964 kb on + strand at 735.964 kb on + strand at 735.965 kb on - strand at 735.965 kb on - strand at 736.081 kb on + strand at 736.584 kb on - strand, within DZA65_RS03485 at 736.981 kb on + strand at 736.981 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 737.009 kb on + strand at 737.009 kb on + strand at 737.009 kb on + strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.012 kb on + strand at 737.013 kb on - strand at 737.013 kb on - strand at 737.013 kb on - strand at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.213 kb on - strand, within DZA65_RS03490 at 737.253 kb on + strand, within DZA65_RS03490 at 737.254 kb on - strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.382 kb on - strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.425 kb on + strand, within DZA65_RS03490 at 737.425 kb on + strand, within DZA65_RS03490 at 737.547 kb on + strand, within DZA65_RS03490 at 737.548 kb on - strand, within DZA65_RS03490 at 737.710 kb on + strand at 737.727 kb on + strand at 737.786 kb on - strand at 737.820 kb on + strand at 737.821 kb on - strand at 737.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 735,091 + DZA65_RS03480 0.51 -0.1 735,101 + DZA65_RS03480 0.51 -0.5 735,101 + DZA65_RS03480 0.51 +0.1 735,101 + DZA65_RS03480 0.51 +0.6 735,102 - DZA65_RS03480 0.52 -0.9 735,102 - DZA65_RS03480 0.52 -0.4 735,257 + DZA65_RS03480 0.63 -1.0 735,392 + DZA65_RS03480 0.73 -2.4 735,392 + DZA65_RS03480 0.73 +0.8 735,392 + DZA65_RS03480 0.73 +0.2 735,393 - DZA65_RS03480 0.73 +0.5 735,393 - DZA65_RS03480 0.73 +0.6 735,415 + DZA65_RS03480 0.75 -0.2 735,415 + DZA65_RS03480 0.75 -0.0 735,415 + DZA65_RS03480 0.75 -0.8 735,415 + DZA65_RS03480 0.75 -2.1 735,432 + DZA65_RS03480 0.76 +0.8 735,432 + DZA65_RS03480 0.76 +0.5 735,433 - DZA65_RS03480 0.76 -0.1 735,433 - DZA65_RS03480 0.76 -1.9 735,433 - DZA65_RS03480 0.76 -0.0 735,620 + +0.8 735,620 + +0.6 735,620 + -0.7 735,620 + -0.4 735,620 + +0.2 735,620 + +0.2 735,620 + -1.3 735,620 + +1.2 735,620 + -0.4 735,620 + +0.3 735,620 + -2.5 735,620 + +1.2 735,620 + -2.5 735,620 + -1.1 735,620 + -0.4 735,620 + -1.6 735,621 - -0.3 735,621 - +0.0 735,621 - -0.0 735,621 - +0.0 735,621 - -0.1 735,621 - +0.6 735,621 - -1.6 735,621 - -0.2 735,621 - -0.6 735,621 - +0.1 735,621 - +1.1 735,621 - -0.8 735,621 - -0.9 735,626 + +0.8 735,692 - +0.1 735,720 + -1.3 735,720 + -0.3 735,744 + -0.7 735,744 + +1.3 735,745 - -0.4 735,745 - +0.8 735,762 + +0.3 735,763 - -1.5 735,782 + +0.5 735,782 + +0.6 735,782 + +0.5 735,782 + -0.4 735,782 + -1.5 735,782 + +1.5 735,782 + -0.7 735,782 + +0.5 735,782 + -1.1 735,782 + +0.8 735,782 + -0.1 735,782 + -0.8 735,782 + +0.8 735,783 - -1.5 735,783 - +0.6 735,783 - +0.5 735,783 - -0.0 735,783 - -1.7 735,783 - -2.2 735,783 - +0.0 735,783 - -0.2 735,783 - -0.0 735,783 - -0.8 735,789 - -0.4 735,789 - +0.8 735,789 - -0.5 735,789 - -0.3 735,867 - -3.0 735,874 + +0.8 735,874 + +0.1 735,874 + +0.3 735,874 + +0.7 735,874 + -0.1 735,875 - -0.5 735,875 - +1.9 735,875 - -1.3 735,876 + -0.2 735,939 + +0.3 735,940 - -0.3 735,950 + -0.5 735,951 - +0.6 735,951 - -0.7 735,964 + -0.3 735,964 + +0.5 735,965 - +0.1 735,965 - -0.0 736,081 + +1.9 736,584 - DZA65_RS03485 0.64 -1.5 736,981 + -2.5 736,981 + +1.1 736,989 + +0.7 736,989 + +0.5 736,989 + -0.5 736,989 + +1.1 737,009 + +1.4 737,009 + +0.8 737,009 + +0.3 737,010 - -0.0 737,010 - -0.8 737,010 - +0.7 737,010 - +0.5 737,010 - -0.9 737,010 - +1.2 737,012 + -1.5 737,013 - +0.8 737,013 - -0.8 737,013 - +0.1 737,170 + DZA65_RS03490 0.24 -0.9 737,170 + DZA65_RS03490 0.24 -0.5 737,170 + DZA65_RS03490 0.24 -0.0 737,170 + DZA65_RS03490 0.24 -0.2 737,170 + DZA65_RS03490 0.24 -0.5 737,170 + DZA65_RS03490 0.24 -0.5 737,170 + DZA65_RS03490 0.24 +1.0 737,170 + DZA65_RS03490 0.24 +0.2 737,170 + DZA65_RS03490 0.24 +0.3 737,170 + DZA65_RS03490 0.24 -1.5 737,171 - DZA65_RS03490 0.24 -2.7 737,171 - DZA65_RS03490 0.24 -0.5 737,171 - DZA65_RS03490 0.24 -0.1 737,171 - DZA65_RS03490 0.24 +0.9 737,212 + DZA65_RS03490 0.30 +0.2 737,212 + DZA65_RS03490 0.30 -0.5 737,212 + DZA65_RS03490 0.30 +0.0 737,212 + DZA65_RS03490 0.30 -0.5 737,213 - DZA65_RS03490 0.30 -0.1 737,253 + DZA65_RS03490 0.36 -0.4 737,254 - DZA65_RS03490 0.36 -0.7 737,381 + DZA65_RS03490 0.54 -0.9 737,381 + DZA65_RS03490 0.54 +0.5 737,381 + DZA65_RS03490 0.54 -0.5 737,381 + DZA65_RS03490 0.54 +0.2 737,382 - DZA65_RS03490 0.54 -0.7 737,389 + DZA65_RS03490 0.55 -0.0 737,389 + DZA65_RS03490 0.55 +1.2 737,389 + DZA65_RS03490 0.55 +0.4 737,389 + DZA65_RS03490 0.55 +0.9 737,389 + DZA65_RS03490 0.55 -0.3 737,390 - DZA65_RS03490 0.55 -1.7 737,390 - DZA65_RS03490 0.55 -1.1 737,390 - DZA65_RS03490 0.55 -0.0 737,391 + DZA65_RS03490 0.55 +1.2 737,391 + DZA65_RS03490 0.55 -0.1 737,391 + DZA65_RS03490 0.55 +0.3 737,392 - DZA65_RS03490 0.55 +0.1 737,392 - DZA65_RS03490 0.55 -0.9 737,392 - DZA65_RS03490 0.55 -1.4 737,392 - DZA65_RS03490 0.55 -1.0 737,392 - DZA65_RS03490 0.55 -1.0 737,392 - DZA65_RS03490 0.55 -0.1 737,425 + DZA65_RS03490 0.60 -0.1 737,425 + DZA65_RS03490 0.60 -0.4 737,547 + DZA65_RS03490 0.77 +0.3 737,548 - DZA65_RS03490 0.77 +0.1 737,710 + -1.1 737,727 + -0.8 737,786 - -2.1 737,820 + -1.0 737,821 - -1.9 737,836 + -0.1
Or see this region's nucleotide sequence