Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03470 and DZA65_RS03475 are separated by 94 nucleotides DZA65_RS03475 and DZA65_RS03480 are separated by 128 nucleotides DZA65_RS03480 and DZA65_RS03485 are separated by 262 nucleotides
DZA65_RS03470: DZA65_RS03470 - membrane protein, at 733,246 to 733,677
_RS03470
DZA65_RS03475: DZA65_RS03475 - flavodoxin FldB, at 733,772 to 734,290
_RS03475
DZA65_RS03480: DZA65_RS03480 - MHS family MFS transporter, at 734,419 to 735,744
_RS03480
DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906
_RS03485
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.593 kb on + strand, within DZA65_RS03470 at 733.593 kb on + strand, within DZA65_RS03470 at 733.594 kb on - strand, within DZA65_RS03470 at 733.675 kb on + strand at 733.675 kb on + strand at 733.778 kb on + strand at 733.778 kb on + strand at 733.778 kb on + strand at 733.779 kb on - strand at 733.779 kb on - strand at 733.779 kb on - strand at 733.842 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.860 kb on - strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.882 kb on + strand at 733.882 kb on + strand, within DZA65_RS03475 at 733.883 kb on - strand, within DZA65_RS03475 at 733.883 kb on - strand, within DZA65_RS03475 at 733.920 kb on + strand, within DZA65_RS03475 at 733.945 kb on + strand, within DZA65_RS03475 at 734.038 kb on - strand, within DZA65_RS03475 at 734.155 kb on - strand, within DZA65_RS03475 at 734.202 kb on - strand, within DZA65_RS03475 at 734.253 kb on + strand at 734.253 kb on + strand at 734.254 kb on - strand at 734.254 kb on - strand at 734.254 kb on - strand at 734.282 kb on + strand at 734.283 kb on - strand at 734.283 kb on - strand at 734.290 kb on + strand at 734.290 kb on + strand at 734.290 kb on + strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.316 kb on + strand at 734.316 kb on + strand at 734.317 kb on - strand at 734.339 kb on + strand at 734.352 kb on + strand at 734.353 kb on - strand at 734.365 kb on + strand at 734.365 kb on + strand at 734.411 kb on + strand at 734.420 kb on + strand at 734.421 kb on - strand at 734.495 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.546 kb on + strand at 734.547 kb on - strand at 734.547 kb on - strand at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.583 kb on + strand, within DZA65_RS03480 at 734.584 kb on - strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.604 kb on + strand, within DZA65_RS03480 at 734.604 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.814 kb on - strand, within DZA65_RS03480 at 734.921 kb on + strand, within DZA65_RS03480 at 734.921 kb on + strand, within DZA65_RS03480 at 734.922 kb on - strand, within DZA65_RS03480 at 734.922 kb on - strand, within DZA65_RS03480 at 734.934 kb on - strand, within DZA65_RS03480 at 734.934 kb on - strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 735.091 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.257 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.626 kb on + strand at 735.692 kb on - strand at 735.720 kb on + strand at 735.720 kb on + strand at 735.744 kb on + strand at 735.744 kb on + strand at 735.745 kb on - strand at 735.745 kb on - strand at 735.762 kb on + strand at 735.763 kb on - strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.867 kb on - strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.876 kb on + strand at 735.939 kb on + strand at 735.940 kb on - strand at 735.950 kb on + strand at 735.951 kb on - strand at 735.951 kb on - strand at 735.964 kb on + strand at 735.964 kb on + strand at 735.965 kb on - strand at 735.965 kb on - strand at 736.081 kb on + strand at 736.584 kb on - strand, within DZA65_RS03485
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 733,496 + DZA65_RS03470 0.58 -0.5 733,496 + DZA65_RS03470 0.58 -2.7 733,496 + DZA65_RS03470 0.58 +0.7 733,496 + DZA65_RS03470 0.58 +0.9 733,496 + DZA65_RS03470 0.58 -0.3 733,497 - DZA65_RS03470 0.58 -1.7 733,497 - DZA65_RS03470 0.58 +0.5 733,497 - DZA65_RS03470 0.58 -0.5 733,497 - DZA65_RS03470 0.58 -0.9 733,497 - DZA65_RS03470 0.58 -2.7 733,593 + DZA65_RS03470 0.80 -0.3 733,593 + DZA65_RS03470 0.80 +0.8 733,594 - DZA65_RS03470 0.81 -0.8 733,675 + -1.1 733,675 + +0.8 733,778 + +0.5 733,778 + -0.0 733,778 + -0.6 733,779 - +0.4 733,779 - +0.6 733,779 - +0.5 733,842 + DZA65_RS03475 0.13 +0.5 733,859 + DZA65_RS03475 0.17 -0.7 733,859 + DZA65_RS03475 0.17 +2.3 733,859 + DZA65_RS03475 0.17 -0.5 733,860 - DZA65_RS03475 0.17 -0.2 733,878 + DZA65_RS03475 0.20 -0.5 733,878 + DZA65_RS03475 0.20 -0.1 733,878 + DZA65_RS03475 0.20 +0.9 733,878 + DZA65_RS03475 0.20 -0.1 733,878 + DZA65_RS03475 0.20 -0.0 733,878 + DZA65_RS03475 0.20 +0.3 733,879 - DZA65_RS03475 0.21 -1.7 733,879 - DZA65_RS03475 0.21 -2.5 733,879 - DZA65_RS03475 0.21 -0.3 733,882 + +1.5 733,882 + DZA65_RS03475 0.21 -0.5 733,883 - DZA65_RS03475 0.21 +1.0 733,883 - DZA65_RS03475 0.21 +0.0 733,920 + DZA65_RS03475 0.29 -0.1 733,945 + DZA65_RS03475 0.33 -1.0 734,038 - DZA65_RS03475 0.51 +1.2 734,155 - DZA65_RS03475 0.74 -0.9 734,202 - DZA65_RS03475 0.83 -0.9 734,253 + -1.3 734,253 + +0.6 734,254 - -0.3 734,254 - +0.7 734,254 - -0.2 734,282 + -0.8 734,283 - -0.1 734,283 - +0.9 734,290 + +0.7 734,290 + -0.5 734,290 + +0.5 734,291 - -0.7 734,291 - +1.9 734,291 - +1.5 734,291 - -0.3 734,291 - +0.5 734,316 + +1.2 734,316 + -2.0 734,317 - +0.7 734,339 + +0.6 734,352 + +0.5 734,353 - +0.4 734,365 + +0.9 734,365 + +0.0 734,411 + -0.6 734,420 + -1.1 734,421 - -0.5 734,495 + +1.2 734,507 + +0.5 734,507 + -1.2 734,507 + +0.5 734,507 + +0.6 734,507 + -1.0 734,508 - -0.8 734,508 - +0.2 734,508 - +0.5 734,508 - +0.3 734,508 - -0.7 734,508 - +0.7 734,508 - -2.2 734,508 - -1.0 734,508 - -0.4 734,508 - +0.7 734,508 - -0.3 734,508 - -0.1 734,546 + -0.4 734,547 - +1.3 734,547 - -0.9 734,578 + DZA65_RS03480 0.12 -0.8 734,578 + DZA65_RS03480 0.12 -0.7 734,578 + DZA65_RS03480 0.12 +0.5 734,578 + DZA65_RS03480 0.12 +1.0 734,578 + DZA65_RS03480 0.12 -0.7 734,578 + DZA65_RS03480 0.12 -0.1 734,578 + DZA65_RS03480 0.12 +0.1 734,579 - DZA65_RS03480 0.12 +1.2 734,579 - DZA65_RS03480 0.12 -0.0 734,579 - DZA65_RS03480 0.12 +1.0 734,583 + DZA65_RS03480 0.12 +1.0 734,584 - DZA65_RS03480 0.12 -1.0 734,585 + DZA65_RS03480 0.13 -0.9 734,585 + DZA65_RS03480 0.13 -0.0 734,585 + DZA65_RS03480 0.13 +0.6 734,585 + DZA65_RS03480 0.13 +1.2 734,586 - DZA65_RS03480 0.13 -1.0 734,586 - DZA65_RS03480 0.13 +0.5 734,586 - DZA65_RS03480 0.13 -0.5 734,604 + DZA65_RS03480 0.14 +0.3 734,604 + DZA65_RS03480 0.14 -0.9 734,606 + DZA65_RS03480 0.14 -0.3 734,606 + DZA65_RS03480 0.14 +0.0 734,606 + DZA65_RS03480 0.14 -0.3 734,814 - DZA65_RS03480 0.30 -0.1 734,921 + DZA65_RS03480 0.38 -2.7 734,921 + DZA65_RS03480 0.38 +0.3 734,922 - DZA65_RS03480 0.38 +1.1 734,922 - DZA65_RS03480 0.38 +0.6 734,934 - DZA65_RS03480 0.39 -0.2 734,934 - DZA65_RS03480 0.39 -0.5 734,948 + DZA65_RS03480 0.40 +0.2 734,948 + DZA65_RS03480 0.40 +0.7 734,948 + DZA65_RS03480 0.40 -0.6 734,949 - DZA65_RS03480 0.40 -0.4 734,949 - DZA65_RS03480 0.40 +0.1 734,949 - DZA65_RS03480 0.40 +0.5 734,949 - DZA65_RS03480 0.40 -2.4 734,949 - DZA65_RS03480 0.40 +0.5 734,960 + DZA65_RS03480 0.41 -0.8 734,960 + DZA65_RS03480 0.41 +0.3 734,960 + DZA65_RS03480 0.41 -1.5 734,960 + DZA65_RS03480 0.41 -0.9 734,960 + DZA65_RS03480 0.41 +0.9 734,960 + DZA65_RS03480 0.41 -0.8 734,961 - DZA65_RS03480 0.41 -0.9 734,961 - DZA65_RS03480 0.41 +1.2 734,961 - DZA65_RS03480 0.41 -1.5 734,961 - DZA65_RS03480 0.41 -0.5 735,091 + DZA65_RS03480 0.51 -0.1 735,101 + DZA65_RS03480 0.51 -0.5 735,101 + DZA65_RS03480 0.51 +0.1 735,101 + DZA65_RS03480 0.51 +0.6 735,102 - DZA65_RS03480 0.52 -0.9 735,102 - DZA65_RS03480 0.52 -0.4 735,257 + DZA65_RS03480 0.63 -1.0 735,392 + DZA65_RS03480 0.73 -2.4 735,392 + DZA65_RS03480 0.73 +0.8 735,392 + DZA65_RS03480 0.73 +0.2 735,393 - DZA65_RS03480 0.73 +0.5 735,393 - DZA65_RS03480 0.73 +0.6 735,415 + DZA65_RS03480 0.75 -0.2 735,415 + DZA65_RS03480 0.75 -0.0 735,415 + DZA65_RS03480 0.75 -0.8 735,415 + DZA65_RS03480 0.75 -2.1 735,432 + DZA65_RS03480 0.76 +0.8 735,432 + DZA65_RS03480 0.76 +0.5 735,433 - DZA65_RS03480 0.76 -0.1 735,433 - DZA65_RS03480 0.76 -1.9 735,433 - DZA65_RS03480 0.76 -0.0 735,620 + +0.8 735,620 + +0.6 735,620 + -0.7 735,620 + -0.4 735,620 + +0.2 735,620 + +0.2 735,620 + -1.3 735,620 + +1.2 735,620 + -0.4 735,620 + +0.3 735,620 + -2.5 735,620 + +1.2 735,620 + -2.5 735,620 + -1.1 735,620 + -0.4 735,620 + -1.6 735,621 - -0.3 735,621 - +0.0 735,621 - -0.0 735,621 - +0.0 735,621 - -0.1 735,621 - +0.6 735,621 - -1.6 735,621 - -0.2 735,621 - -0.6 735,621 - +0.1 735,621 - +1.1 735,621 - -0.8 735,621 - -0.9 735,626 + +0.8 735,692 - +0.1 735,720 + -1.3 735,720 + -0.3 735,744 + -0.7 735,744 + +1.3 735,745 - -0.4 735,745 - +0.8 735,762 + +0.3 735,763 - -1.5 735,782 + +0.5 735,782 + +0.6 735,782 + +0.5 735,782 + -0.4 735,782 + -1.5 735,782 + +1.5 735,782 + -0.7 735,782 + +0.5 735,782 + -1.1 735,782 + +0.8 735,782 + -0.1 735,782 + -0.8 735,782 + +0.8 735,783 - -1.5 735,783 - +0.6 735,783 - +0.5 735,783 - -0.0 735,783 - -1.7 735,783 - -2.2 735,783 - +0.0 735,783 - -0.2 735,783 - -0.0 735,783 - -0.8 735,789 - -0.4 735,789 - +0.8 735,789 - -0.5 735,789 - -0.3 735,867 - -3.0 735,874 + +0.8 735,874 + +0.1 735,874 + +0.3 735,874 + +0.7 735,874 + -0.1 735,875 - -0.5 735,875 - +1.9 735,875 - -1.3 735,876 + -0.2 735,939 + +0.3 735,940 - -0.3 735,950 + -0.5 735,951 - +0.6 735,951 - -0.7 735,964 + -0.3 735,964 + +0.5 735,965 - +0.1 735,965 - -0.0 736,081 + +1.9 736,584 - DZA65_RS03485 0.64 -1.5
Or see this region's nucleotide sequence