Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03385

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03375 and DZA65_RS03380 overlap by 32 nucleotidesDZA65_RS03380 and DZA65_RS03385 are separated by 153 nucleotidesDZA65_RS03385 and DZA65_RS03390 are separated by 40 nucleotides DZA65_RS03375: DZA65_RS03375 - ribosomal protein S18-alanine N-acetyltransferase, at 716,025 to 716,468 _RS03375 DZA65_RS03380: DZA65_RS03380 - DNA polymerase III subunit psi, at 716,437 to 716,856 _RS03380 DZA65_RS03385: DZA65_RS03385 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 717,010 to 718,038 _RS03385 DZA65_RS03390: DZA65_RS03390 - aldo/keto reductase, at 718,079 to 719,074 _RS03390 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.013 kb on + strandat 716.013 kb on + strandat 716.013 kb on + strandat 716.013 kb on + strandat 716.014 kb on - strandat 716.014 kb on - strandat 716.014 kb on - strandat 716.048 kb on + strandat 716.048 kb on + strandat 716.100 kb on + strand, within DZA65_RS03375at 716.101 kb on - strand, within DZA65_RS03375at 716.101 kb on - strand, within DZA65_RS03375at 716.101 kb on - strand, within DZA65_RS03375at 716.125 kb on + strand, within DZA65_RS03375at 716.125 kb on + strand, within DZA65_RS03375at 716.143 kb on - strand, within DZA65_RS03375at 716.143 kb on - strand, within DZA65_RS03375at 716.143 kb on - strand, within DZA65_RS03375at 716.143 kb on - strand, within DZA65_RS03375at 716.143 kb on - strand, within DZA65_RS03375at 716.178 kb on + strand, within DZA65_RS03375at 716.178 kb on + strand, within DZA65_RS03375at 716.178 kb on + strand, within DZA65_RS03375at 716.178 kb on + strand, within DZA65_RS03375at 716.179 kb on - strand, within DZA65_RS03375at 716.179 kb on - strand, within DZA65_RS03375at 716.181 kb on - strand, within DZA65_RS03375at 716.276 kb on + strand, within DZA65_RS03375at 716.276 kb on + strand, within DZA65_RS03375at 716.276 kb on + strand, within DZA65_RS03375at 716.276 kb on + strand, within DZA65_RS03375at 716.276 kb on + strand, within DZA65_RS03375at 716.276 kb on + strand, within DZA65_RS03375at 716.277 kb on - strand, within DZA65_RS03375at 716.277 kb on - strand, within DZA65_RS03375at 716.277 kb on - strand, within DZA65_RS03375at 716.277 kb on - strand, within DZA65_RS03375at 716.277 kb on - strand, within DZA65_RS03375at 716.277 kb on - strand, within DZA65_RS03375at 716.289 kb on + strand, within DZA65_RS03375at 716.290 kb on - strand, within DZA65_RS03375at 716.290 kb on - strand, within DZA65_RS03375at 716.290 kb on - strand, within DZA65_RS03375at 716.292 kb on + strand, within DZA65_RS03375at 716.293 kb on - strand, within DZA65_RS03375at 716.309 kb on - strand, within DZA65_RS03375at 716.350 kb on + strand, within DZA65_RS03375at 716.351 kb on - strand, within DZA65_RS03375at 716.406 kb on + strand, within DZA65_RS03375at 716.406 kb on + strand, within DZA65_RS03375at 716.406 kb on + strand, within DZA65_RS03375at 716.407 kb on - strand, within DZA65_RS03375at 716.407 kb on - strand, within DZA65_RS03375at 716.896 kb on - strandat 716.896 kb on - strandat 716.896 kb on - strandat 716.936 kb on - strandat 716.936 kb on - strandat 716.941 kb on - strandat 716.941 kb on - strandat 716.973 kb on + strandat 716.973 kb on + strandat 716.973 kb on + strandat 716.973 kb on + strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.974 kb on - strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.975 kb on + strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.976 kb on - strandat 716.991 kb on + strandat 717.021 kb on - strandat 717.041 kb on + strandat 717.042 kb on - strandat 717.042 kb on - strandat 717.042 kb on - strandat 717.042 kb on - strandat 717.140 kb on + strand, within DZA65_RS03385at 717.140 kb on + strand, within DZA65_RS03385at 717.141 kb on - strand, within DZA65_RS03385at 717.141 kb on - strand, within DZA65_RS03385at 717.141 kb on - strand, within DZA65_RS03385at 717.141 kb on - strand, within DZA65_RS03385at 717.141 kb on - strand, within DZA65_RS03385at 717.141 kb on - strand, within DZA65_RS03385at 717.154 kb on + strand, within DZA65_RS03385at 717.154 kb on + strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.155 kb on - strand, within DZA65_RS03385at 717.253 kb on + strand, within DZA65_RS03385at 717.253 kb on + strand, within DZA65_RS03385at 717.253 kb on + strand, within DZA65_RS03385at 717.253 kb on + strand, within DZA65_RS03385at 717.253 kb on + strand, within DZA65_RS03385at 717.253 kb on + strand, within DZA65_RS03385at 717.254 kb on - strand, within DZA65_RS03385at 717.254 kb on - strand, within DZA65_RS03385at 717.254 kb on - strand, within DZA65_RS03385at 717.254 kb on - strand, within DZA65_RS03385at 717.254 kb on - strand, within DZA65_RS03385at 717.254 kb on - strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.405 kb on + strand, within DZA65_RS03385at 717.406 kb on - strand, within DZA65_RS03385at 717.406 kb on - strand, within DZA65_RS03385at 717.406 kb on - strand, within DZA65_RS03385at 717.406 kb on - strand, within DZA65_RS03385at 717.406 kb on - strand, within DZA65_RS03385at 717.437 kb on - strand, within DZA65_RS03385at 717.437 kb on - strand, within DZA65_RS03385at 717.462 kb on + strand, within DZA65_RS03385at 717.462 kb on + strand, within DZA65_RS03385at 717.463 kb on - strand, within DZA65_RS03385at 717.463 kb on - strand, within DZA65_RS03385at 717.463 kb on - strand, within DZA65_RS03385at 717.463 kb on - strand, within DZA65_RS03385at 717.493 kb on + strand, within DZA65_RS03385at 717.494 kb on - strand, within DZA65_RS03385at 717.494 kb on - strand, within DZA65_RS03385at 717.515 kb on + strand, within DZA65_RS03385at 717.533 kb on + strand, within DZA65_RS03385at 717.533 kb on + strand, within DZA65_RS03385at 717.533 kb on + strand, within DZA65_RS03385at 717.534 kb on - strand, within DZA65_RS03385at 717.683 kb on + strand, within DZA65_RS03385at 717.684 kb on - strand, within DZA65_RS03385at 717.684 kb on - strand, within DZA65_RS03385at 717.773 kb on - strand, within DZA65_RS03385at 718.023 kb on + strandat 718.024 kb on - strandat 718.024 kb on - strandat 718.027 kb on - strandat 718.117 kb on - strandat 718.117 kb on - strandat 718.218 kb on + strand, within DZA65_RS03390at 718.328 kb on - strand, within DZA65_RS03390at 718.328 kb on - strand, within DZA65_RS03390at 718.454 kb on + strand, within DZA65_RS03390at 718.454 kb on + strand, within DZA65_RS03390at 718.464 kb on + strand, within DZA65_RS03390at 718.464 kb on + strand, within DZA65_RS03390at 718.464 kb on + strand, within DZA65_RS03390at 718.539 kb on + strand, within DZA65_RS03390at 718.540 kb on - strand, within DZA65_RS03390at 718.562 kb on - strand, within DZA65_RS03390at 718.562 kb on - strand, within DZA65_RS03390at 718.619 kb on - strand, within DZA65_RS03390at 718.620 kb on + strand, within DZA65_RS03390at 718.620 kb on + strand, within DZA65_RS03390at 718.620 kb on + strand, within DZA65_RS03390at 718.621 kb on - strand, within DZA65_RS03390at 718.621 kb on - strand, within DZA65_RS03390at 718.621 kb on - strand, within DZA65_RS03390at 718.621 kb on - strand, within DZA65_RS03390at 718.694 kb on - strand, within DZA65_RS03390at 718.704 kb on + strand, within DZA65_RS03390at 718.704 kb on + strand, within DZA65_RS03390at 718.705 kb on - strand, within DZA65_RS03390at 718.707 kb on + strand, within DZA65_RS03390at 718.707 kb on + strand, within DZA65_RS03390at 718.708 kb on - strand, within DZA65_RS03390at 718.767 kb on + strand, within DZA65_RS03390at 718.767 kb on + strand, within DZA65_RS03390at 718.767 kb on + strand, within DZA65_RS03390at 718.768 kb on - strand, within DZA65_RS03390at 718.768 kb on - strand, within DZA65_RS03390at 718.878 kb on - strand, within DZA65_RS03390at 718.878 kb on - strand, within DZA65_RS03390at 718.894 kb on + strand, within DZA65_RS03390at 718.895 kb on - strand, within DZA65_RS03390at 718.895 kb on - strandat 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.905 kb on + strand, within DZA65_RS03390at 718.906 kb on - strand, within DZA65_RS03390at 718.906 kb on - strand, within DZA65_RS03390at 718.906 kb on - strand, within DZA65_RS03390at 718.906 kb on - strand, within DZA65_RS03390at 718.906 kb on - strand, within DZA65_RS03390at 718.909 kb on + strand, within DZA65_RS03390at 718.909 kb on + strand, within DZA65_RS03390at 718.909 kb on + strand, within DZA65_RS03390at 718.909 kb on + strandat 718.910 kb on - strand, within DZA65_RS03390at 718.910 kb on - strand, within DZA65_RS03390at 718.910 kb on - strand, within DZA65_RS03390at 718.910 kb on - strand, within DZA65_RS03390at 718.995 kb on + strandat 718.995 kb on + strandat 718.995 kb on + strandat 718.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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716,013 + +1.5
716,013 + +0.2
716,013 + +1.5
716,013 + +0.5
716,014 - -0.6
716,014 - -0.1
716,014 - -0.0
716,048 + -1.9
716,048 + -2.4
716,100 + DZA65_RS03375 0.17 -1.7
716,101 - DZA65_RS03375 0.17 +0.5
716,101 - DZA65_RS03375 0.17 -1.5
716,101 - DZA65_RS03375 0.17 -0.3
716,125 + DZA65_RS03375 0.23 -1.4
716,125 + DZA65_RS03375 0.23 +1.3
716,143 - DZA65_RS03375 0.27 -0.2
716,143 - DZA65_RS03375 0.27 -0.0
716,143 - DZA65_RS03375 0.27 +0.7
716,143 - DZA65_RS03375 0.27 -0.5
716,143 - DZA65_RS03375 0.27 -1.9
716,178 + DZA65_RS03375 0.34 -1.5
716,178 + DZA65_RS03375 0.34 -0.0
716,178 + DZA65_RS03375 0.34 -0.5
716,178 + DZA65_RS03375 0.34 +0.6
716,179 - DZA65_RS03375 0.35 +2.0
716,179 - DZA65_RS03375 0.35 +0.9
716,181 - DZA65_RS03375 0.35 +0.6
716,276 + DZA65_RS03375 0.57 -2.9
716,276 + DZA65_RS03375 0.57 -1.4
716,276 + DZA65_RS03375 0.57 -1.5
716,276 + DZA65_RS03375 0.57 -0.1
716,276 + DZA65_RS03375 0.57 +1.6
716,276 + DZA65_RS03375 0.57 -0.0
716,277 - DZA65_RS03375 0.57 -0.4
716,277 - DZA65_RS03375 0.57 +1.3
716,277 - DZA65_RS03375 0.57 +0.2
716,277 - DZA65_RS03375 0.57 -1.7
716,277 - DZA65_RS03375 0.57 +0.2
716,277 - DZA65_RS03375 0.57 +0.9
716,289 + DZA65_RS03375 0.59 -1.5
716,290 - DZA65_RS03375 0.60 +0.8
716,290 - DZA65_RS03375 0.60 -0.4
716,290 - DZA65_RS03375 0.60 -0.1
716,292 + DZA65_RS03375 0.60 +0.3
716,293 - DZA65_RS03375 0.60 -0.2
716,309 - DZA65_RS03375 0.64 +1.2
716,350 + DZA65_RS03375 0.73 -0.1
716,351 - DZA65_RS03375 0.73 +0.5
716,406 + DZA65_RS03375 0.86 -0.0
716,406 + DZA65_RS03375 0.86 +1.7
716,406 + DZA65_RS03375 0.86 +0.8
716,407 - DZA65_RS03375 0.86 -1.0
716,407 - DZA65_RS03375 0.86 +0.5
716,896 - -0.7
716,896 - -0.4
716,896 - -0.5
716,936 - +0.8
716,936 - +0.8
716,941 - -1.4
716,941 - -0.8
716,973 + -1.1
716,973 + +0.3
716,973 + +1.1
716,973 + +0.9
716,974 - -0.7
716,974 - -0.2
716,974 - -0.8
716,974 - -0.1
716,974 - +1.0
716,974 - +1.2
716,974 - -0.6
716,974 - -1.5
716,974 - -1.1
716,975 + +0.1
716,975 + +0.1
716,975 + +0.6
716,975 + +1.0
716,975 + +1.3
716,975 + -1.4
716,975 + +1.2
716,975 + +0.5
716,976 - -0.6
716,976 - +0.2
716,976 - -0.6
716,976 - -0.9
716,976 - -0.1
716,976 - -0.9
716,976 - +1.0
716,976 - -0.5
716,976 - -2.5
716,991 + +0.6
717,021 - -0.5
717,041 + +0.5
717,042 - -0.4
717,042 - +0.5
717,042 - +0.4
717,042 - -0.4
717,140 + DZA65_RS03385 0.13 +0.7
717,140 + DZA65_RS03385 0.13 +1.5
717,141 - DZA65_RS03385 0.13 -1.5
717,141 - DZA65_RS03385 0.13 +0.0
717,141 - DZA65_RS03385 0.13 -0.8
717,141 - DZA65_RS03385 0.13 -0.9
717,141 - DZA65_RS03385 0.13 +0.1
717,141 - DZA65_RS03385 0.13 +0.7
717,154 + DZA65_RS03385 0.14 -0.4
717,154 + DZA65_RS03385 0.14 -0.7
717,155 - DZA65_RS03385 0.14 -0.1
717,155 - DZA65_RS03385 0.14 +0.5
717,155 - DZA65_RS03385 0.14 -0.4
717,155 - DZA65_RS03385 0.14 -2.1
717,155 - DZA65_RS03385 0.14 -0.4
717,155 - DZA65_RS03385 0.14 +0.1
717,155 - DZA65_RS03385 0.14 -0.4
717,155 - DZA65_RS03385 0.14 -1.9
717,253 + DZA65_RS03385 0.24 -0.7
717,253 + DZA65_RS03385 0.24 +0.5
717,253 + DZA65_RS03385 0.24 -0.5
717,253 + DZA65_RS03385 0.24 -2.5
717,253 + DZA65_RS03385 0.24 -0.3
717,253 + DZA65_RS03385 0.24 +0.8
717,254 - DZA65_RS03385 0.24 +0.8
717,254 - DZA65_RS03385 0.24 +1.1
717,254 - DZA65_RS03385 0.24 -0.5
717,254 - DZA65_RS03385 0.24 -0.3
717,254 - DZA65_RS03385 0.24 -0.4
717,254 - DZA65_RS03385 0.24 +0.1
717,405 + DZA65_RS03385 0.38 -1.4
717,405 + DZA65_RS03385 0.38 +0.8
717,405 + DZA65_RS03385 0.38 +0.0
717,405 + DZA65_RS03385 0.38 +0.5
717,405 + DZA65_RS03385 0.38 +1.1
717,405 + DZA65_RS03385 0.38 -1.1
717,405 + DZA65_RS03385 0.38 -1.1
717,405 + DZA65_RS03385 0.38 -0.4
717,406 - DZA65_RS03385 0.38 -2.0
717,406 - DZA65_RS03385 0.38 +1.5
717,406 - DZA65_RS03385 0.38 -0.2
717,406 - DZA65_RS03385 0.38 +0.3
717,406 - DZA65_RS03385 0.38 -1.4
717,437 - DZA65_RS03385 0.41 -0.0
717,437 - DZA65_RS03385 0.41 -0.1
717,462 + DZA65_RS03385 0.44 -0.1
717,462 + DZA65_RS03385 0.44 -1.2
717,463 - DZA65_RS03385 0.44 -0.5
717,463 - DZA65_RS03385 0.44 -1.1
717,463 - DZA65_RS03385 0.44 -2.4
717,463 - DZA65_RS03385 0.44 -0.4
717,493 + DZA65_RS03385 0.47 -1.2
717,494 - DZA65_RS03385 0.47 +0.3
717,494 - DZA65_RS03385 0.47 -1.8
717,515 + DZA65_RS03385 0.49 -0.3
717,533 + DZA65_RS03385 0.51 -1.7
717,533 + DZA65_RS03385 0.51 +0.2
717,533 + DZA65_RS03385 0.51 -2.7
717,534 - DZA65_RS03385 0.51 +0.2
717,683 + DZA65_RS03385 0.65 -1.9
717,684 - DZA65_RS03385 0.66 -0.2
717,684 - DZA65_RS03385 0.66 -0.5
717,773 - DZA65_RS03385 0.74 +0.9
718,023 + +0.8
718,024 - +0.5
718,024 - +0.3
718,027 - -0.4
718,117 - -0.5
718,117 - +0.0
718,218 + DZA65_RS03390 0.14 -0.5
718,328 - DZA65_RS03390 0.25 +0.2
718,328 - DZA65_RS03390 0.25 -0.5
718,454 + DZA65_RS03390 0.38 -0.2
718,454 + DZA65_RS03390 0.38 +0.8
718,464 + DZA65_RS03390 0.39 +0.5
718,464 + DZA65_RS03390 0.39 -0.6
718,464 + DZA65_RS03390 0.39 +0.9
718,539 + DZA65_RS03390 0.46 -0.7
718,540 - DZA65_RS03390 0.46 -0.4
718,562 - DZA65_RS03390 0.48 -1.7
718,562 - DZA65_RS03390 0.48 +0.3
718,619 - DZA65_RS03390 0.54 -0.2
718,620 + DZA65_RS03390 0.54 -0.6
718,620 + DZA65_RS03390 0.54 -0.2
718,620 + DZA65_RS03390 0.54 -1.4
718,621 - DZA65_RS03390 0.54 +1.3
718,621 - DZA65_RS03390 0.54 -0.5
718,621 - DZA65_RS03390 0.54 -0.8
718,621 - DZA65_RS03390 0.54 +0.6
718,694 - DZA65_RS03390 0.62 -0.2
718,704 + DZA65_RS03390 0.63 +1.3
718,704 + DZA65_RS03390 0.63 -0.4
718,705 - DZA65_RS03390 0.63 +0.2
718,707 + DZA65_RS03390 0.63 +0.1
718,707 + DZA65_RS03390 0.63 -0.9
718,708 - DZA65_RS03390 0.63 -1.0
718,767 + DZA65_RS03390 0.69 -0.4
718,767 + DZA65_RS03390 0.69 +0.6
718,767 + DZA65_RS03390 0.69 -1.1
718,768 - DZA65_RS03390 0.69 -0.3
718,768 - DZA65_RS03390 0.69 +1.0
718,878 - DZA65_RS03390 0.80 +0.5
718,878 - DZA65_RS03390 0.80 +0.3
718,894 + DZA65_RS03390 0.82 -1.9
718,895 - DZA65_RS03390 0.82 +0.1
718,895 - +1.5
718,905 + DZA65_RS03390 0.83 +0.5
718,905 + DZA65_RS03390 0.83 -1.1
718,905 + DZA65_RS03390 0.83 +0.7
718,905 + DZA65_RS03390 0.83 +1.6
718,905 + DZA65_RS03390 0.83 -0.5
718,905 + DZA65_RS03390 0.83 -0.5
718,905 + DZA65_RS03390 0.83 -0.1
718,905 + DZA65_RS03390 0.83 +0.2
718,905 + DZA65_RS03390 0.83 +0.0
718,906 - DZA65_RS03390 0.83 +0.3
718,906 - DZA65_RS03390 0.83 -0.5
718,906 - DZA65_RS03390 0.83 -0.2
718,906 - DZA65_RS03390 0.83 -0.3
718,906 - DZA65_RS03390 0.83 -0.8
718,909 + DZA65_RS03390 0.83 +1.0
718,909 + DZA65_RS03390 0.83 -0.6
718,909 + DZA65_RS03390 0.83 -0.1
718,909 + +0.5
718,910 - DZA65_RS03390 0.83 +0.7
718,910 - DZA65_RS03390 0.83 -0.1
718,910 - DZA65_RS03390 0.83 -1.8
718,910 - DZA65_RS03390 0.83 +0.9
718,995 + +0.1
718,995 + +0.2
718,995 + +0.7
718,996 - +1.1

Or see this region's nucleotide sequence