Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03270 and DZA65_RS03275 are separated by 65 nucleotides DZA65_RS03275 and DZA65_RS03280 are separated by 117 nucleotides
DZA65_RS03270: DZA65_RS03270 - DEAD/DEAH family ATP-dependent RNA helicase, at 692,918 to 694,804
_RS03270
DZA65_RS03275: DZA65_RS03275 - LLM class flavin-dependent oxidoreductase, at 694,870 to 695,889
_RS03275
DZA65_RS03280: DZA65_RS03280 - U32 family peptidase, at 696,007 to 696,885
_RS03280
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 694.429 kb on + strand, within DZA65_RS03270 at 694.472 kb on + strand, within DZA65_RS03270 at 694.792 kb on + strand at 694.795 kb on + strand at 694.795 kb on + strand at 694.795 kb on + strand at 694.796 kb on - strand at 694.796 kb on - strand at 694.796 kb on - strand at 694.796 kb on - strand at 694.805 kb on + strand at 694.853 kb on - strand at 694.867 kb on - strand at 694.867 kb on - strand at 694.867 kb on - strand at 694.867 kb on - strand at 694.954 kb on + strand at 694.955 kb on - strand at 695.053 kb on + strand, within DZA65_RS03275 at 695.066 kb on - strand, within DZA65_RS03275 at 695.066 kb on - strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.155 kb on - strand at 695.155 kb on - strand, within DZA65_RS03275 at 695.155 kb on - strand, within DZA65_RS03275 at 695.235 kb on + strand, within DZA65_RS03275 at 695.235 kb on + strand, within DZA65_RS03275 at 695.235 kb on + strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.237 kb on + strand, within DZA65_RS03275 at 695.237 kb on + strand, within DZA65_RS03275 at 695.237 kb on + strand, within DZA65_RS03275 at 695.238 kb on - strand, within DZA65_RS03275 at 695.238 kb on - strand, within DZA65_RS03275 at 695.370 kb on - strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.460 kb on - strand, within DZA65_RS03275 at 695.588 kb on + strand, within DZA65_RS03275 at 695.599 kb on + strand, within DZA65_RS03275 at 695.600 kb on - strand, within DZA65_RS03275 at 695.600 kb on - strand, within DZA65_RS03275 at 695.600 kb on - strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.890 kb on - strand at 695.890 kb on - strand at 695.935 kb on - strand at 695.953 kb on - strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.969 kb on - strand at 695.969 kb on - strand at 695.969 kb on - strand at 696.201 kb on + strand, within DZA65_RS03280 at 696.201 kb on + strand, within DZA65_RS03280 at 696.202 kb on - strand, within DZA65_RS03280 at 696.202 kb on - strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.204 kb on - strand at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.209 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.359 kb on + strand, within DZA65_RS03280 at 696.359 kb on + strand, within DZA65_RS03280 at 696.359 kb on + strand, within DZA65_RS03280 at 696.360 kb on - strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.477 kb on + strand, within DZA65_RS03280 at 696.477 kb on + strand, within DZA65_RS03280 at 696.477 kb on + strand, within DZA65_RS03280 at 696.478 kb on - strand, within DZA65_RS03280 at 696.478 kb on - strand, within DZA65_RS03280 at 696.478 kb on - strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.520 kb on - strand, within DZA65_RS03280 at 696.520 kb on - strand at 696.521 kb on + strand, within DZA65_RS03280 at 696.521 kb on + strand, within DZA65_RS03280 at 696.521 kb on + strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.530 kb on + strand, within DZA65_RS03280 at 696.530 kb on + strand, within DZA65_RS03280 at 696.530 kb on + strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.582 kb on + strand, within DZA65_RS03280 at 696.635 kb on + strand, within DZA65_RS03280 at 696.635 kb on + strand, within DZA65_RS03280 at 696.635 kb on + strand, within DZA65_RS03280 at 696.636 kb on - strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.792 kb on + strand at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.795 kb on + strand, within DZA65_RS03280 at 696.796 kb on - strand, within DZA65_RS03280 at 696.825 kb on - strand at 696.854 kb on + strand at 696.855 kb on - strand at 696.855 kb on - strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.858 kb on - strand at 696.858 kb on - strand at 696.858 kb on - strand at 696.878 kb on + strand at 696.878 kb on + strand at 696.879 kb on - strand at 696.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 694,429 + DZA65_RS03270 0.80 -0.3 694,472 + DZA65_RS03270 0.82 -2.1 694,792 + +0.1 694,795 + -0.5 694,795 + -2.1 694,795 + +0.5 694,796 - +0.1 694,796 - -0.9 694,796 - +0.0 694,796 - -0.1 694,805 + +0.6 694,853 - +0.4 694,867 - -0.8 694,867 - -0.7 694,867 - +1.2 694,867 - -0.4 694,954 + -1.5 694,955 - +1.6 695,053 + DZA65_RS03275 0.18 +0.5 695,066 - DZA65_RS03275 0.19 -0.9 695,066 - DZA65_RS03275 0.19 +0.6 695,093 + DZA65_RS03275 0.22 -0.6 695,093 + DZA65_RS03275 0.22 -0.8 695,093 + DZA65_RS03275 0.22 +0.1 695,093 + DZA65_RS03275 0.22 -0.5 695,094 - DZA65_RS03275 0.22 +0.8 695,094 - DZA65_RS03275 0.22 -1.3 695,094 - DZA65_RS03275 0.22 -0.2 695,094 - DZA65_RS03275 0.22 +0.0 695,094 - DZA65_RS03275 0.22 +0.1 695,155 - +1.5 695,155 - DZA65_RS03275 0.28 -1.9 695,155 - DZA65_RS03275 0.28 -0.5 695,235 + DZA65_RS03275 0.36 -0.5 695,235 + DZA65_RS03275 0.36 +0.1 695,235 + DZA65_RS03275 0.36 -0.7 695,236 - DZA65_RS03275 0.36 -0.5 695,236 - DZA65_RS03275 0.36 -2.9 695,236 - DZA65_RS03275 0.36 -0.0 695,236 - DZA65_RS03275 0.36 -1.8 695,236 - DZA65_RS03275 0.36 -1.0 695,237 + DZA65_RS03275 0.36 -0.4 695,237 + DZA65_RS03275 0.36 -0.3 695,237 + DZA65_RS03275 0.36 -0.9 695,238 - DZA65_RS03275 0.36 -0.5 695,238 - DZA65_RS03275 0.36 -0.4 695,370 - DZA65_RS03275 0.49 +0.2 695,459 + DZA65_RS03275 0.58 +0.8 695,459 + DZA65_RS03275 0.58 -0.5 695,459 + DZA65_RS03275 0.58 -0.5 695,459 + DZA65_RS03275 0.58 -1.1 695,460 - DZA65_RS03275 0.58 -0.1 695,588 + DZA65_RS03275 0.70 +2.8 695,599 + DZA65_RS03275 0.71 +0.1 695,600 - DZA65_RS03275 0.72 -1.1 695,600 - DZA65_RS03275 0.72 +0.4 695,600 - DZA65_RS03275 0.72 -3.1 695,739 + DZA65_RS03275 0.85 -2.1 695,739 + -0.1 695,739 + DZA65_RS03275 0.85 -1.7 695,739 + DZA65_RS03275 0.85 +0.7 695,739 + DZA65_RS03275 0.85 -0.3 695,739 + DZA65_RS03275 0.85 -1.7 695,740 - DZA65_RS03275 0.85 -0.8 695,740 - DZA65_RS03275 0.85 +0.7 695,740 - DZA65_RS03275 0.85 +0.2 695,740 - DZA65_RS03275 0.85 -0.3 695,740 - DZA65_RS03275 0.85 +0.3 695,890 - -0.3 695,890 - +0.5 695,935 - -0.8 695,953 - +0.2 695,962 + -1.0 695,962 + -1.3 695,968 + -0.1 695,968 + +0.0 695,969 - +0.1 695,969 - +0.2 695,969 - +2.6 696,201 + DZA65_RS03280 0.22 -1.0 696,201 + DZA65_RS03280 0.22 -0.8 696,202 - DZA65_RS03280 0.22 -1.0 696,202 - DZA65_RS03280 0.22 +1.1 696,203 + DZA65_RS03280 0.22 +0.1 696,203 + DZA65_RS03280 0.22 -1.9 696,203 + DZA65_RS03280 0.22 +0.5 696,203 + DZA65_RS03280 0.22 +1.6 696,203 + DZA65_RS03280 0.22 +0.7 696,204 - +0.5 696,204 - DZA65_RS03280 0.22 -0.5 696,204 - DZA65_RS03280 0.22 +0.6 696,204 - DZA65_RS03280 0.22 +0.8 696,204 - DZA65_RS03280 0.22 +0.0 696,204 - DZA65_RS03280 0.22 -0.1 696,204 - DZA65_RS03280 0.22 +1.0 696,204 - DZA65_RS03280 0.22 -0.7 696,204 - DZA65_RS03280 0.22 +0.5 696,204 - DZA65_RS03280 0.22 -0.3 696,209 + DZA65_RS03280 0.23 +0.5 696,287 + DZA65_RS03280 0.32 +0.5 696,287 + DZA65_RS03280 0.32 -0.3 696,287 + DZA65_RS03280 0.32 -0.8 696,287 + DZA65_RS03280 0.32 -0.0 696,287 + DZA65_RS03280 0.32 -0.8 696,359 + DZA65_RS03280 0.40 -0.1 696,359 + DZA65_RS03280 0.40 -0.5 696,359 + DZA65_RS03280 0.40 +0.1 696,360 - DZA65_RS03280 0.40 +0.3 696,380 + DZA65_RS03280 0.42 -0.9 696,380 + DZA65_RS03280 0.42 -0.2 696,380 + DZA65_RS03280 0.42 +0.3 696,380 + DZA65_RS03280 0.42 -0.5 696,380 + DZA65_RS03280 0.42 -1.5 696,380 + DZA65_RS03280 0.42 +0.2 696,380 + DZA65_RS03280 0.42 +0.5 696,380 + DZA65_RS03280 0.42 -1.9 696,380 + DZA65_RS03280 0.42 +0.3 696,380 + DZA65_RS03280 0.42 -0.0 696,381 - DZA65_RS03280 0.43 -0.4 696,381 - DZA65_RS03280 0.43 +2.3 696,381 - DZA65_RS03280 0.43 -1.7 696,381 - DZA65_RS03280 0.43 +0.3 696,381 - DZA65_RS03280 0.43 -0.3 696,381 - DZA65_RS03280 0.43 +1.2 696,381 - DZA65_RS03280 0.43 -0.2 696,381 - DZA65_RS03280 0.43 -2.1 696,381 - DZA65_RS03280 0.43 -0.8 696,381 - DZA65_RS03280 0.43 -0.1 696,381 - DZA65_RS03280 0.43 -1.4 696,381 - DZA65_RS03280 0.43 -0.5 696,381 - DZA65_RS03280 0.43 -1.5 696,381 - DZA65_RS03280 0.43 -1.7 696,381 - DZA65_RS03280 0.43 -0.6 696,381 - DZA65_RS03280 0.43 -2.3 696,381 - DZA65_RS03280 0.43 +0.2 696,381 - DZA65_RS03280 0.43 -1.8 696,477 + DZA65_RS03280 0.53 -2.9 696,477 + DZA65_RS03280 0.53 +1.1 696,477 + DZA65_RS03280 0.53 +0.9 696,478 - DZA65_RS03280 0.54 +0.8 696,478 - DZA65_RS03280 0.54 +0.3 696,478 - DZA65_RS03280 0.54 +0.1 696,519 + DZA65_RS03280 0.58 +1.5 696,519 + DZA65_RS03280 0.58 +0.5 696,519 + DZA65_RS03280 0.58 -1.9 696,519 + DZA65_RS03280 0.58 -0.5 696,519 + DZA65_RS03280 0.58 -1.1 696,519 + DZA65_RS03280 0.58 +0.9 696,520 - DZA65_RS03280 0.58 -1.2 696,520 - +1.0 696,521 + DZA65_RS03280 0.58 -0.2 696,521 + DZA65_RS03280 0.58 -0.2 696,521 + DZA65_RS03280 0.58 -0.4 696,522 - DZA65_RS03280 0.59 +1.7 696,522 - DZA65_RS03280 0.59 -0.6 696,522 - DZA65_RS03280 0.59 -1.1 696,522 - DZA65_RS03280 0.59 -0.0 696,530 + DZA65_RS03280 0.59 +1.4 696,530 + DZA65_RS03280 0.59 -0.8 696,530 + DZA65_RS03280 0.59 +0.8 696,531 - DZA65_RS03280 0.60 +0.6 696,531 - DZA65_RS03280 0.60 -1.1 696,531 - DZA65_RS03280 0.60 -0.3 696,531 - DZA65_RS03280 0.60 +0.7 696,531 - DZA65_RS03280 0.60 -0.2 696,531 - DZA65_RS03280 0.60 -0.2 696,582 + DZA65_RS03280 0.65 -0.5 696,635 + DZA65_RS03280 0.71 +0.5 696,635 + DZA65_RS03280 0.71 +0.5 696,635 + DZA65_RS03280 0.71 -0.1 696,636 - DZA65_RS03280 0.72 +1.1 696,788 + DZA65_RS03280 0.89 -0.1 696,788 + DZA65_RS03280 0.89 +0.5 696,788 + DZA65_RS03280 0.89 -3.1 696,788 + DZA65_RS03280 0.89 +0.0 696,788 + DZA65_RS03280 0.89 -0.7 696,788 + DZA65_RS03280 0.89 +1.2 696,789 - DZA65_RS03280 0.89 -0.6 696,789 - DZA65_RS03280 0.89 -1.0 696,789 - DZA65_RS03280 0.89 -0.5 696,789 - DZA65_RS03280 0.89 +0.3 696,789 - DZA65_RS03280 0.89 +1.1 696,789 - DZA65_RS03280 0.89 +0.5 696,789 - DZA65_RS03280 0.89 +0.5 696,792 + +1.2 696,792 + DZA65_RS03280 0.89 -0.1 696,792 + DZA65_RS03280 0.89 -1.5 696,792 + DZA65_RS03280 0.89 -0.9 696,792 + DZA65_RS03280 0.89 -0.5 696,792 + DZA65_RS03280 0.89 +1.0 696,792 + DZA65_RS03280 0.89 +0.4 696,793 - DZA65_RS03280 0.89 -2.0 696,793 - DZA65_RS03280 0.89 +0.5 696,793 - DZA65_RS03280 0.89 -0.0 696,793 - DZA65_RS03280 0.89 -2.7 696,793 - DZA65_RS03280 0.89 +1.4 696,793 - DZA65_RS03280 0.89 -0.2 696,793 - DZA65_RS03280 0.89 -0.4 696,793 - DZA65_RS03280 0.89 +0.5 696,793 - DZA65_RS03280 0.89 -0.2 696,793 - DZA65_RS03280 0.89 -0.5 696,793 - DZA65_RS03280 0.89 -0.2 696,793 - DZA65_RS03280 0.89 +2.2 696,793 - DZA65_RS03280 0.89 +0.7 696,793 - DZA65_RS03280 0.89 +1.0 696,795 + DZA65_RS03280 0.90 +0.9 696,796 - DZA65_RS03280 0.90 -0.5 696,825 - +0.3 696,854 + +0.5 696,855 - +0.3 696,855 - +0.8 696,857 + +1.1 696,857 + +0.5 696,857 + -0.2 696,857 + +1.0 696,857 + -0.5 696,857 + +0.4 696,857 + -0.5 696,857 + -1.9 696,857 + +0.4 696,858 - -0.6 696,858 - -2.7 696,858 - +0.0 696,878 + +0.5 696,878 + -0.9 696,879 - -0.2 696,879 - -0.8
Or see this region's nucleotide sequence