Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03185

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03175 and DZA65_RS03180 are separated by 264 nucleotidesDZA65_RS03180 and DZA65_RS03185 are separated by 123 nucleotidesDZA65_RS03185 and DZA65_RS03190 are separated by 157 nucleotidesDZA65_RS03190 and DZA65_RS03195 are separated by 47 nucleotides DZA65_RS03175: DZA65_RS03175 - serine-type D-Ala-D-Ala carboxypeptidase, at 674,044 to 675,477 _RS03175 DZA65_RS03180: DZA65_RS03180 - transcription elongation factor GreA, at 675,742 to 676,218 _RS03180 DZA65_RS03185: DZA65_RS03185 - ribosome assembly RNA-binding protein YhbY, at 676,342 to 676,635 _RS03185 DZA65_RS03190: DZA65_RS03190 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 676,793 to 677,422 _RS03190 DZA65_RS03195: DZA65_RS03195 - ATP-dependent zinc metalloprotease FtsH, at 677,470 to 679,422 _RS03195 Position (kb) 676 677Strain fitness (log2 ratio) -2 -1 0 1 2at 675.392 kb on + strandat 675.393 kb on - strandat 675.401 kb on + strandat 675.401 kb on + strandat 675.402 kb on - strandat 675.402 kb on - strandat 675.402 kb on - strandat 675.478 kb on - strandat 675.478 kb on - strandat 675.492 kb on - strandat 675.492 kb on - strandat 675.512 kb on + strandat 675.512 kb on + strandat 675.513 kb on - strandat 675.513 kb on - strandat 675.513 kb on - strandat 675.513 kb on - strandat 675.515 kb on + strandat 675.516 kb on - strandat 675.537 kb on + strandat 675.538 kb on - strandat 675.626 kb on + strandat 675.626 kb on + strandat 675.627 kb on - strandat 675.636 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.727 kb on - strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.742 kb on - strandat 675.783 kb on - strandat 675.828 kb on + strand, within DZA65_RS03180at 675.828 kb on + strand, within DZA65_RS03180at 675.883 kb on + strand, within DZA65_RS03180at 675.883 kb on + strand, within DZA65_RS03180at 675.883 kb on + strand, within DZA65_RS03180at 675.884 kb on - strand, within DZA65_RS03180at 675.884 kb on - strand, within DZA65_RS03180at 675.964 kb on - strand, within DZA65_RS03180at 676.012 kb on - strand, within DZA65_RS03180at 676.054 kb on + strand, within DZA65_RS03180at 676.054 kb on + strand, within DZA65_RS03180at 676.055 kb on - strand, within DZA65_RS03180at 676.055 kb on - strand, within DZA65_RS03180at 676.059 kb on + strand, within DZA65_RS03180at 676.098 kb on + strand, within DZA65_RS03180at 676.098 kb on + strand, within DZA65_RS03180at 676.098 kb on + strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.133 kb on + strand, within DZA65_RS03180at 676.184 kb on + strandat 676.184 kb on + strandat 676.185 kb on - strandat 676.185 kb on - strandat 676.210 kb on + strandat 676.211 kb on - strandat 676.211 kb on - strandat 676.251 kb on + strandat 676.251 kb on + strandat 676.279 kb on + strandat 676.383 kb on - strand, within DZA65_RS03185at 676.535 kb on - strand, within DZA65_RS03185at 676.535 kb on - strand, within DZA65_RS03185at 676.535 kb on - strand, within DZA65_RS03185at 676.623 kb on + strandat 676.676 kb on + strandat 676.693 kb on + strandat 676.693 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.758 kb on + strandat 676.758 kb on + strandat 676.758 kb on + strandat 676.758 kb on + strandat 676.764 kb on + strandat 676.764 kb on + strandat 676.779 kb on + strandat 677.420 kb on + strandat 677.420 kb on + strandat 677.420 kb on + strandat 677.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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675,392 + +2.0
675,393 - +1.8
675,401 + +0.4
675,401 + +1.2
675,402 - +1.1
675,402 - -0.6
675,402 - +0.9
675,478 - -0.7
675,478 - -0.0
675,492 - -0.1
675,492 - -0.5
675,512 + -0.1
675,512 + +1.0
675,513 - +0.0
675,513 - -1.9
675,513 - -2.1
675,513 - +1.5
675,515 + -1.1
675,516 - +2.5
675,537 + +0.3
675,538 - +0.3
675,626 + -1.6
675,626 + -0.9
675,627 - -1.5
675,636 + -1.5
675,684 + +0.0
675,684 + -1.1
675,684 + -1.1
675,684 + -0.5
675,684 + -0.5
675,684 + +0.2
675,685 - -0.3
675,685 - -0.9
675,685 - +0.7
675,685 - +1.9
675,685 - -0.9
675,727 - +0.5
675,732 + -0.2
675,732 + +0.2
675,732 + +0.0
675,732 + -0.2
675,732 + -0.1
675,742 - -0.3
675,783 - -0.4
675,828 + DZA65_RS03180 0.18 -0.3
675,828 + DZA65_RS03180 0.18 -0.1
675,883 + DZA65_RS03180 0.30 -0.5
675,883 + DZA65_RS03180 0.30 -0.5
675,883 + DZA65_RS03180 0.30 -0.1
675,884 - DZA65_RS03180 0.30 -0.4
675,884 - DZA65_RS03180 0.30 -0.9
675,964 - DZA65_RS03180 0.47 -0.6
676,012 - DZA65_RS03180 0.57 -0.8
676,054 + DZA65_RS03180 0.65 -0.3
676,054 + DZA65_RS03180 0.65 -0.8
676,055 - DZA65_RS03180 0.66 +0.5
676,055 - DZA65_RS03180 0.66 +0.5
676,059 + DZA65_RS03180 0.66 +0.5
676,098 + DZA65_RS03180 0.75 -0.2
676,098 + DZA65_RS03180 0.75 +0.2
676,098 + DZA65_RS03180 0.75 +2.0
676,099 - DZA65_RS03180 0.75 +0.0
676,099 - DZA65_RS03180 0.75 -0.8
676,099 - DZA65_RS03180 0.75 +0.5
676,099 - DZA65_RS03180 0.75 +0.9
676,099 - DZA65_RS03180 0.75 +0.2
676,099 - DZA65_RS03180 0.75 +0.8
676,133 + DZA65_RS03180 0.82 -0.4
676,184 + -0.1
676,184 + +0.1
676,185 - -1.2
676,185 - -0.0
676,210 + -0.8
676,211 - +0.5
676,211 - -0.4
676,251 + -2.0
676,251 + -1.1
676,279 + +0.5
676,383 - DZA65_RS03185 0.14 -2.0
676,535 - DZA65_RS03185 0.66 -0.7
676,535 - DZA65_RS03185 0.66 -0.3
676,535 - DZA65_RS03185 0.66 -1.9
676,623 + -1.1
676,676 + -0.2
676,693 + +0.4
676,693 + +0.5
676,754 + +0.9
676,754 + +0.2
676,754 + +0.3
676,754 + -0.9
676,754 + -0.3
676,754 + -0.3
676,758 + -1.1
676,758 + -0.5
676,758 + -0.0
676,758 + -1.9
676,764 + +0.6
676,764 + +0.4
676,779 + +0.5
677,420 + -0.8
677,420 + -0.3
677,420 + -0.6
677,423 + -0.3

Or see this region's nucleotide sequence