Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03040 and DZA65_RS03045 are separated by 159 nucleotides DZA65_RS03045 and DZA65_RS03050 are separated by 559 nucleotides
DZA65_RS03040: DZA65_RS03040 - FAD:protein FMN transferase ApbE, at 647,940 to 648,986
_RS03040
DZA65_RS03045: DZA65_RS03045 - coniferyl aldehyde dehydrogenase, at 649,146 to 650,582
_RS03045
DZA65_RS03050: DZA65_RS03050 - flavocytochrome c, at 651,142 to 653,919
_RS03050
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 648.168 kb on + strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.230 kb on + strand, within DZA65_RS03040 at 648.231 kb on - strand, within DZA65_RS03040 at 648.231 kb on - strand, within DZA65_RS03040 at 648.248 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.252 kb on - strand, within DZA65_RS03040 at 648.395 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.472 kb on - strand at 648.472 kb on - strand, within DZA65_RS03040 at 648.472 kb on - strand, within DZA65_RS03040 at 648.472 kb on - strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.553 kb on - strand, within DZA65_RS03040 at 648.653 kb on + strand, within DZA65_RS03040 at 648.714 kb on + strand, within DZA65_RS03040 at 648.715 kb on - strand, within DZA65_RS03040 at 648.914 kb on + strand at 648.927 kb on - strand at 649.024 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.034 kb on + strand at 649.034 kb on + strand at 649.034 kb on + strand at 649.035 kb on - strand at 649.053 kb on + strand at 649.053 kb on + strand at 649.054 kb on - strand at 649.054 kb on - strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.074 kb on - strand at 649.088 kb on + strand at 649.124 kb on + strand at 649.124 kb on + strand at 649.124 kb on + strand at 649.125 kb on - strand at 649.134 kb on - strand at 649.167 kb on - strand at 649.211 kb on + strand at 649.211 kb on + strand at 649.211 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.263 kb on - strand at 649.277 kb on + strand at 649.277 kb on + strand at 649.277 kb on + strand at 649.278 kb on - strand at 649.320 kb on + strand, within DZA65_RS03045 at 649.320 kb on + strand, within DZA65_RS03045 at 649.321 kb on - strand, within DZA65_RS03045 at 649.586 kb on + strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.685 kb on - strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.908 kb on - strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.930 kb on + strand, within DZA65_RS03045 at 649.931 kb on - strand, within DZA65_RS03045 at 649.931 kb on - strand, within DZA65_RS03045 at 649.990 kb on - strand, within DZA65_RS03045 at 650.000 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.031 kb on - strand, within DZA65_RS03045 at 650.139 kb on - strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.235 kb on - strand, within DZA65_RS03045 at 650.289 kb on + strand, within DZA65_RS03045 at 650.289 kb on + strand, within DZA65_RS03045 at 650.289 kb on + strand, within DZA65_RS03045 at 650.290 kb on - strand, within DZA65_RS03045 at 650.290 kb on - strand, within DZA65_RS03045 at 650.481 kb on + strand at 650.561 kb on - strand at 650.561 kb on - strand at 650.598 kb on + strand at 650.598 kb on + strand at 650.599 kb on - strand at 650.599 kb on - strand at 650.600 kb on + strand at 650.627 kb on - strand at 650.627 kb on - strand at 650.653 kb on + strand at 650.653 kb on + strand at 650.654 kb on - strand at 650.654 kb on - strand at 650.679 kb on - strand at 650.679 kb on - strand at 650.684 kb on + strand at 650.685 kb on - strand at 650.721 kb on + strand at 650.744 kb on + strand at 650.767 kb on + strand at 650.767 kb on + strand at 650.768 kb on - strand at 650.861 kb on + strand at 650.866 kb on + strand at 650.866 kb on + strand at 650.866 kb on + strand at 650.866 kb on + strand at 650.867 kb on - strand at 650.867 kb on - strand at 650.876 kb on + strand at 650.877 kb on - strand at 650.877 kb on - strand at 650.877 kb on - strand at 650.877 kb on - strand at 650.878 kb on + strand at 650.891 kb on + strand at 650.892 kb on - strand at 650.946 kb on + strand at 650.993 kb on - strand at 650.993 kb on - strand at 651.027 kb on + strand at 651.027 kb on + strand at 651.041 kb on + strand at 651.042 kb on - strand at 651.042 kb on - strand at 651.050 kb on + strand at 651.085 kb on + strand at 651.116 kb on + strand at 651.117 kb on - strand at 651.122 kb on + strand at 651.126 kb on + strand at 651.127 kb on - strand at 651.174 kb on + strand at 651.175 kb on - strand at 651.244 kb on + strand at 651.244 kb on + strand at 651.245 kb on - strand at 651.245 kb on - strand at 651.245 kb on - strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.278 kb on - strand at 651.278 kb on - strand at 651.278 kb on - strand at 651.278 kb on - strand at 651.280 kb on + strand at 651.280 kb on + strand at 651.281 kb on - strand at 651.281 kb on - strand at 651.330 kb on + strand at 651.331 kb on - strand at 651.339 kb on + strand at 651.454 kb on + strand, within DZA65_RS03050 at 651.454 kb on + strand, within DZA65_RS03050 at 651.454 kb on + strand, within DZA65_RS03050 at 651.454 kb on + strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 648,168 + DZA65_RS03040 0.22 +0.8 648,169 - DZA65_RS03040 0.22 -0.3 648,169 - DZA65_RS03040 0.22 +0.1 648,169 - DZA65_RS03040 0.22 -2.1 648,230 + DZA65_RS03040 0.28 +0.1 648,231 - DZA65_RS03040 0.28 -1.5 648,231 - DZA65_RS03040 0.28 +0.5 648,248 + DZA65_RS03040 0.29 -0.5 648,251 + DZA65_RS03040 0.30 +0.8 648,251 + DZA65_RS03040 0.30 +1.5 648,251 + DZA65_RS03040 0.30 -0.1 648,251 + DZA65_RS03040 0.30 -0.0 648,252 - DZA65_RS03040 0.30 +0.5 648,395 + DZA65_RS03040 0.43 -1.1 648,471 + DZA65_RS03040 0.51 +0.0 648,471 + DZA65_RS03040 0.51 -0.1 648,471 + DZA65_RS03040 0.51 -0.5 648,471 + DZA65_RS03040 0.51 +1.5 648,471 + DZA65_RS03040 0.51 +0.8 648,471 + DZA65_RS03040 0.51 +0.5 648,472 - +0.5 648,472 - DZA65_RS03040 0.51 -0.5 648,472 - DZA65_RS03040 0.51 +0.7 648,472 - DZA65_RS03040 0.51 -2.5 648,552 + DZA65_RS03040 0.58 +1.2 648,552 + DZA65_RS03040 0.58 -1.0 648,552 + DZA65_RS03040 0.58 -0.8 648,552 + DZA65_RS03040 0.58 -0.2 648,552 + DZA65_RS03040 0.58 -0.4 648,552 + DZA65_RS03040 0.58 -0.3 648,553 - DZA65_RS03040 0.59 -0.4 648,653 + DZA65_RS03040 0.68 +1.8 648,714 + DZA65_RS03040 0.74 -1.0 648,715 - DZA65_RS03040 0.74 -0.8 648,914 + +0.8 648,927 - +0.1 649,024 + +0.7 649,030 + +0.1 649,030 + -0.2 649,030 + -1.9 649,030 + -0.3 649,031 - -0.9 649,031 - -1.4 649,031 - +0.5 649,031 - -2.1 649,031 - -1.3 649,034 + +0.2 649,034 + -0.2 649,034 + -1.2 649,035 - +0.5 649,053 + +1.3 649,053 + +0.3 649,054 - +0.8 649,054 - -1.7 649,073 + +0.8 649,073 + +0.1 649,073 + -0.0 649,073 + +0.2 649,074 - -0.5 649,088 + +0.3 649,124 + +0.8 649,124 + -0.5 649,124 + -0.0 649,125 - +0.4 649,134 - +0.3 649,167 - -0.2 649,211 + -0.3 649,211 + +0.3 649,211 + +0.4 649,256 + +0.7 649,256 + -0.4 649,256 + +0.6 649,256 + +0.6 649,256 + +0.8 649,256 + +1.2 649,256 + -0.3 649,257 - -1.0 649,257 - -0.4 649,257 - -0.3 649,257 - +0.5 649,257 - -0.0 649,263 - -0.1 649,277 + +0.3 649,277 + -0.3 649,277 + +1.8 649,278 - -0.5 649,320 + DZA65_RS03045 0.12 -2.3 649,320 + DZA65_RS03045 0.12 +0.4 649,321 - DZA65_RS03045 0.12 +0.0 649,586 + DZA65_RS03045 0.31 +0.3 649,587 - DZA65_RS03045 0.31 -0.7 649,587 - DZA65_RS03045 0.31 +0.1 649,587 - DZA65_RS03045 0.31 +0.1 649,587 - DZA65_RS03045 0.31 -0.4 649,587 - DZA65_RS03045 0.31 -0.5 649,685 - DZA65_RS03045 0.38 +0.4 649,907 + DZA65_RS03045 0.53 -0.1 649,907 + DZA65_RS03045 0.53 -1.7 649,907 + DZA65_RS03045 0.53 -0.5 649,908 - DZA65_RS03045 0.53 +0.3 649,920 + DZA65_RS03045 0.54 +0.1 649,920 + DZA65_RS03045 0.54 +1.1 649,920 + DZA65_RS03045 0.54 +2.0 649,920 + DZA65_RS03045 0.54 +0.5 649,921 - DZA65_RS03045 0.54 +0.5 649,921 - DZA65_RS03045 0.54 -1.7 649,921 - DZA65_RS03045 0.54 +0.4 649,930 + DZA65_RS03045 0.55 +0.0 649,931 - DZA65_RS03045 0.55 -0.0 649,931 - DZA65_RS03045 0.55 -0.5 649,990 - DZA65_RS03045 0.59 -1.4 650,000 + DZA65_RS03045 0.59 -1.2 650,016 + DZA65_RS03045 0.61 -1.0 650,016 + DZA65_RS03045 0.61 +2.2 650,016 + DZA65_RS03045 0.61 +1.0 650,016 + DZA65_RS03045 0.61 -0.8 650,016 + DZA65_RS03045 0.61 -0.5 650,017 - DZA65_RS03045 0.61 -0.9 650,017 - DZA65_RS03045 0.61 +0.2 650,017 - DZA65_RS03045 0.61 -0.1 650,017 - DZA65_RS03045 0.61 -0.4 650,031 - DZA65_RS03045 0.62 -2.3 650,139 - DZA65_RS03045 0.69 -0.4 650,226 + DZA65_RS03045 0.75 +0.4 650,226 + DZA65_RS03045 0.75 +0.1 650,226 + DZA65_RS03045 0.75 -0.7 650,226 + DZA65_RS03045 0.75 +0.0 650,227 - DZA65_RS03045 0.75 +2.8 650,227 - DZA65_RS03045 0.75 +0.2 650,227 - DZA65_RS03045 0.75 +0.1 650,227 - DZA65_RS03045 0.75 -1.2 650,227 - DZA65_RS03045 0.75 -1.1 650,235 - DZA65_RS03045 0.76 +0.1 650,289 + DZA65_RS03045 0.80 +1.5 650,289 + DZA65_RS03045 0.80 -0.4 650,289 + DZA65_RS03045 0.80 -0.0 650,290 - DZA65_RS03045 0.80 -0.5 650,290 - DZA65_RS03045 0.80 -0.9 650,481 + +1.9 650,561 - +1.4 650,561 - -0.1 650,598 + -0.8 650,598 + +0.8 650,599 - +0.7 650,599 - -0.1 650,600 + +0.2 650,627 - +0.6 650,627 - -0.5 650,653 + -0.6 650,653 + +0.0 650,654 - +0.3 650,654 - -1.7 650,679 - +0.3 650,679 - -0.5 650,684 + -0.5 650,685 - -2.3 650,721 + -0.3 650,744 + +0.9 650,767 + -0.2 650,767 + +0.0 650,768 - +0.1 650,861 + -0.2 650,866 + +0.2 650,866 + -0.2 650,866 + +0.3 650,866 + +0.1 650,867 - -0.7 650,867 - -1.5 650,876 + +0.0 650,877 - +0.5 650,877 - -0.3 650,877 - +1.0 650,877 - +1.3 650,878 + +1.1 650,891 + -0.2 650,892 - -0.1 650,946 + -0.7 650,993 - +0.4 650,993 - -0.3 651,027 + +1.2 651,027 + +0.2 651,041 + +0.5 651,042 - -1.7 651,042 - -0.2 651,050 + +0.4 651,085 + -0.1 651,116 + +0.9 651,117 - -0.8 651,122 + -0.7 651,126 + -1.5 651,127 - -0.5 651,174 + -0.4 651,175 - +0.5 651,244 + -0.3 651,244 + -2.3 651,245 - -0.5 651,245 - +0.2 651,245 - +1.0 651,277 + +0.9 651,277 + -0.5 651,277 + -0.5 651,277 + +0.0 651,277 + -0.5 651,277 + +1.8 651,277 + +0.9 651,278 - +0.0 651,278 - -0.1 651,278 - +1.6 651,278 - +1.5 651,280 + -0.5 651,280 + +0.3 651,281 - -0.1 651,281 - +0.1 651,330 + -1.9 651,331 - -0.1 651,339 + -0.2 651,454 + DZA65_RS03050 0.11 -1.0 651,454 + DZA65_RS03050 0.11 -0.2 651,454 + DZA65_RS03050 0.11 -0.4 651,454 + DZA65_RS03050 0.11 +1.1 651,455 - DZA65_RS03050 0.11 +0.5 651,455 - DZA65_RS03050 0.11 -1.2 651,455 - DZA65_RS03050 0.11 +0.1 651,455 - DZA65_RS03050 0.11 +1.7
Or see this region's nucleotide sequence