Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02775

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02770 and DZA65_RS02775 are separated by 10 nucleotidesDZA65_RS02775 and DZA65_RS02780 are separated by 21 nucleotides DZA65_RS02770: DZA65_RS02770 - SIR2 family protein, at 597,642 to 598,655 _RS02770 DZA65_RS02775: DZA65_RS02775 - ATPase, at 598,666 to 599,061 _RS02775 DZA65_RS02780: DZA65_RS02780 - IS630 family transposase, at 599,083 to 600,120 _RS02780 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 597.696 kb on - strandat 597.698 kb on + strandat 597.698 kb on + strandat 597.699 kb on - strandat 597.699 kb on - strandat 597.701 kb on + strandat 597.701 kb on + strandat 597.754 kb on + strand, within DZA65_RS02770at 597.754 kb on + strand, within DZA65_RS02770at 597.755 kb on - strand, within DZA65_RS02770at 597.755 kb on - strand, within DZA65_RS02770at 597.776 kb on + strand, within DZA65_RS02770at 597.778 kb on + strand, within DZA65_RS02770at 597.806 kb on + strand, within DZA65_RS02770at 597.806 kb on + strand, within DZA65_RS02770at 597.812 kb on + strand, within DZA65_RS02770at 597.838 kb on + strand, within DZA65_RS02770at 597.839 kb on - strand, within DZA65_RS02770at 597.839 kb on - strand, within DZA65_RS02770at 597.868 kb on + strand, within DZA65_RS02770at 597.868 kb on + strand, within DZA65_RS02770at 597.869 kb on - strand, within DZA65_RS02770at 597.877 kb on + strand, within DZA65_RS02770at 597.878 kb on - strand, within DZA65_RS02770at 597.878 kb on - strand, within DZA65_RS02770at 597.878 kb on - strand, within DZA65_RS02770at 597.878 kb on - strand, within DZA65_RS02770at 597.878 kb on - strand, within DZA65_RS02770at 597.928 kb on + strand, within DZA65_RS02770at 597.929 kb on - strand, within DZA65_RS02770at 597.929 kb on - strand, within DZA65_RS02770at 597.944 kb on + strand, within DZA65_RS02770at 597.944 kb on + strand, within DZA65_RS02770at 597.957 kb on - strand, within DZA65_RS02770at 598.036 kb on + strand, within DZA65_RS02770at 598.057 kb on - strand, within DZA65_RS02770at 598.104 kb on + strand, within DZA65_RS02770at 598.104 kb on + strand, within DZA65_RS02770at 598.104 kb on + strand, within DZA65_RS02770at 598.105 kb on - strand, within DZA65_RS02770at 598.105 kb on - strand, within DZA65_RS02770at 598.158 kb on - strand, within DZA65_RS02770at 598.196 kb on + strand, within DZA65_RS02770at 598.211 kb on + strand, within DZA65_RS02770at 598.222 kb on + strand, within DZA65_RS02770at 598.222 kb on + strand, within DZA65_RS02770at 598.223 kb on - strand, within DZA65_RS02770at 598.235 kb on - strand, within DZA65_RS02770at 598.241 kb on + strand, within DZA65_RS02770at 598.242 kb on - strand, within DZA65_RS02770at 598.250 kb on - strand, within DZA65_RS02770at 598.272 kb on - strand, within DZA65_RS02770at 598.317 kb on + strand, within DZA65_RS02770at 598.340 kb on + strand, within DZA65_RS02770at 598.380 kb on + strand, within DZA65_RS02770at 598.385 kb on - strand, within DZA65_RS02770at 598.388 kb on + strand, within DZA65_RS02770at 598.403 kb on + strand, within DZA65_RS02770at 598.488 kb on - strand, within DZA65_RS02770at 598.628 kb on - strandat 598.700 kb on + strandat 598.701 kb on - strandat 598.701 kb on - strandat 598.725 kb on + strand, within DZA65_RS02775at 598.725 kb on + strand, within DZA65_RS02775at 598.823 kb on + strand, within DZA65_RS02775at 598.823 kb on + strand, within DZA65_RS02775at 598.835 kb on + strand, within DZA65_RS02775at 598.844 kb on + strand, within DZA65_RS02775at 598.845 kb on - strand, within DZA65_RS02775at 598.868 kb on + strand, within DZA65_RS02775at 598.868 kb on + strand, within DZA65_RS02775at 598.869 kb on - strand, within DZA65_RS02775at 598.869 kb on - strand, within DZA65_RS02775at 598.934 kb on + strand, within DZA65_RS02775at 598.934 kb on + strand, within DZA65_RS02775at 598.935 kb on - strand, within DZA65_RS02775at 598.935 kb on - strand, within DZA65_RS02775at 598.935 kb on - strand, within DZA65_RS02775at 598.957 kb on + strand, within DZA65_RS02775at 598.958 kb on - strand, within DZA65_RS02775at 598.959 kb on + strand, within DZA65_RS02775at 598.975 kb on - strand, within DZA65_RS02775at 598.979 kb on + strand, within DZA65_RS02775at 599.072 kb on - strandat 599.082 kb on - strandat 599.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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597,696 - -0.4
597,698 + -0.9
597,698 + -0.4
597,699 - -0.4
597,699 - +0.5
597,701 + +0.1
597,701 + -0.3
597,754 + DZA65_RS02770 0.11 -0.4
597,754 + DZA65_RS02770 0.11 -0.3
597,755 - DZA65_RS02770 0.11 +0.3
597,755 - DZA65_RS02770 0.11 +0.1
597,776 + DZA65_RS02770 0.13 -0.1
597,778 + DZA65_RS02770 0.13 +0.7
597,806 + DZA65_RS02770 0.16 -0.4
597,806 + DZA65_RS02770 0.16 -0.6
597,812 + DZA65_RS02770 0.17 -0.4
597,838 + DZA65_RS02770 0.19 -0.5
597,839 - DZA65_RS02770 0.19 -0.5
597,839 - DZA65_RS02770 0.19 +0.8
597,868 + DZA65_RS02770 0.22 -0.1
597,868 + DZA65_RS02770 0.22 -0.3
597,869 - DZA65_RS02770 0.22 +0.3
597,877 + DZA65_RS02770 0.23 -0.1
597,878 - DZA65_RS02770 0.23 +0.3
597,878 - DZA65_RS02770 0.23 -0.1
597,878 - DZA65_RS02770 0.23 -0.4
597,878 - DZA65_RS02770 0.23 -0.3
597,878 - DZA65_RS02770 0.23 +1.3
597,928 + DZA65_RS02770 0.28 -0.1
597,929 - DZA65_RS02770 0.28 -0.3
597,929 - DZA65_RS02770 0.28 +1.9
597,944 + DZA65_RS02770 0.30 +0.8
597,944 + DZA65_RS02770 0.30 -0.8
597,957 - DZA65_RS02770 0.31 -1.3
598,036 + DZA65_RS02770 0.39 +1.8
598,057 - DZA65_RS02770 0.41 -1.0
598,104 + DZA65_RS02770 0.46 -0.5
598,104 + DZA65_RS02770 0.46 +0.5
598,104 + DZA65_RS02770 0.46 +0.6
598,105 - DZA65_RS02770 0.46 -0.6
598,105 - DZA65_RS02770 0.46 +0.0
598,158 - DZA65_RS02770 0.51 +1.6
598,196 + DZA65_RS02770 0.55 +0.5
598,211 + DZA65_RS02770 0.56 -1.7
598,222 + DZA65_RS02770 0.57 -1.7
598,222 + DZA65_RS02770 0.57 -1.1
598,223 - DZA65_RS02770 0.57 +0.2
598,235 - DZA65_RS02770 0.58 -1.1
598,241 + DZA65_RS02770 0.59 -0.5
598,242 - DZA65_RS02770 0.59 +0.1
598,250 - DZA65_RS02770 0.60 +0.1
598,272 - DZA65_RS02770 0.62 -0.8
598,317 + DZA65_RS02770 0.67 +0.3
598,340 + DZA65_RS02770 0.69 +0.2
598,380 + DZA65_RS02770 0.73 +0.9
598,385 - DZA65_RS02770 0.73 -2.5
598,388 + DZA65_RS02770 0.74 -0.9
598,403 + DZA65_RS02770 0.75 +0.9
598,488 - DZA65_RS02770 0.83 -0.5
598,628 - -0.9
598,700 + -0.9
598,701 - +0.2
598,701 - -1.9
598,725 + DZA65_RS02775 0.15 +0.5
598,725 + DZA65_RS02775 0.15 +0.2
598,823 + DZA65_RS02775 0.40 +0.8
598,823 + DZA65_RS02775 0.40 +0.8
598,835 + DZA65_RS02775 0.43 +0.2
598,844 + DZA65_RS02775 0.45 +0.1
598,845 - DZA65_RS02775 0.45 +0.5
598,868 + DZA65_RS02775 0.51 -1.5
598,868 + DZA65_RS02775 0.51 -0.5
598,869 - DZA65_RS02775 0.51 -0.4
598,869 - DZA65_RS02775 0.51 -0.2
598,934 + DZA65_RS02775 0.68 +1.1
598,934 + DZA65_RS02775 0.68 +1.6
598,935 - DZA65_RS02775 0.68 +0.5
598,935 - DZA65_RS02775 0.68 +0.0
598,935 - DZA65_RS02775 0.68 -0.9
598,957 + DZA65_RS02775 0.73 +1.8
598,958 - DZA65_RS02775 0.74 +0.1
598,959 + DZA65_RS02775 0.74 +0.1
598,975 - DZA65_RS02775 0.78 +0.9
598,979 + DZA65_RS02775 0.79 +1.2
599,072 - +0.1
599,082 - +0.1
599,082 - +0.8

Or see this region's nucleotide sequence