Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02730 and DZA65_RS02735 overlap by 8 nucleotidesDZA65_RS02735 and DZA65_RS02740 are separated by 9 nucleotides DZA65_RS02730: DZA65_RS02730 - hypothetical protein, at 587,466 to 588,848 _RS02730 DZA65_RS02735: DZA65_RS02735 - glycosyltransferase, at 588,841 to 589,830 _RS02735 DZA65_RS02740: DZA65_RS02740 - glycosyltransferase family 4 protein, at 589,840 to 591,051 _RS02740 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1 2 3at 587.847 kb on + strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.871 kb on + strand, within DZA65_RS02730at 588.057 kb on - strand, within DZA65_RS02730at 588.098 kb on + strand, within DZA65_RS02730at 588.098 kb on + strand, within DZA65_RS02730at 588.098 kb on + strand, within DZA65_RS02730at 588.123 kb on - strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.172 kb on - strandat 588.193 kb on + strand, within DZA65_RS02730at 588.243 kb on - strandat 588.273 kb on + strand, within DZA65_RS02730at 588.291 kb on - strand, within DZA65_RS02730at 588.340 kb on - strand, within DZA65_RS02730at 588.340 kb on - strand, within DZA65_RS02730at 588.357 kb on + strand, within DZA65_RS02730at 588.358 kb on - strand, within DZA65_RS02730at 588.358 kb on - strand, within DZA65_RS02730at 588.358 kb on - strand, within DZA65_RS02730at 588.398 kb on - strand, within DZA65_RS02730at 588.446 kb on - strand, within DZA65_RS02730at 588.513 kb on + strand, within DZA65_RS02730at 588.523 kb on + strand, within DZA65_RS02730at 588.752 kb on + strandat 588.781 kb on + strandat 588.874 kb on - strandat 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.972 kb on - strand, within DZA65_RS02735at 588.972 kb on - strand, within DZA65_RS02735at 589.075 kb on + strand, within DZA65_RS02735at 589.075 kb on + strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.096 kb on + strand, within DZA65_RS02735at 589.096 kb on + strand, within DZA65_RS02735at 589.097 kb on - strand, within DZA65_RS02735at 589.107 kb on - strand, within DZA65_RS02735at 589.140 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.226 kb on - strand, within DZA65_RS02735at 589.233 kb on + strandat 589.234 kb on - strand, within DZA65_RS02735at 589.234 kb on - strand, within DZA65_RS02735at 589.251 kb on + strand, within DZA65_RS02735at 589.252 kb on - strand, within DZA65_RS02735at 589.252 kb on - strand, within DZA65_RS02735at 589.262 kb on + strand, within DZA65_RS02735at 589.263 kb on - strand, within DZA65_RS02735at 589.263 kb on - strandat 589.264 kb on + strand, within DZA65_RS02735at 589.304 kb on + strand, within DZA65_RS02735at 589.304 kb on + strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.306 kb on + strand, within DZA65_RS02735at 589.331 kb on + strand, within DZA65_RS02735at 589.337 kb on - strand, within DZA65_RS02735at 589.407 kb on + strand, within DZA65_RS02735at 589.408 kb on - strand, within DZA65_RS02735at 589.412 kb on + strand, within DZA65_RS02735at 589.427 kb on + strand, within DZA65_RS02735at 589.427 kb on + strand, within DZA65_RS02735at 589.428 kb on - strand, within DZA65_RS02735at 589.428 kb on - strand, within DZA65_RS02735at 589.433 kb on - strand, within DZA65_RS02735at 589.433 kb on - strand, within DZA65_RS02735at 589.443 kb on + strand, within DZA65_RS02735at 589.465 kb on + strand, within DZA65_RS02735at 589.467 kb on + strand, within DZA65_RS02735at 589.468 kb on - strand, within DZA65_RS02735at 589.468 kb on - strand, within DZA65_RS02735at 589.547 kb on - strand, within DZA65_RS02735at 589.573 kb on - strand, within DZA65_RS02735at 589.616 kb on + strand, within DZA65_RS02735at 589.622 kb on + strand, within DZA65_RS02735at 589.622 kb on + strand, within DZA65_RS02735at 589.623 kb on - strand, within DZA65_RS02735at 589.645 kb on - strand, within DZA65_RS02735at 589.696 kb on - strand, within DZA65_RS02735at 589.745 kb on + strandat 589.746 kb on - strandat 589.819 kb on - strandat 589.829 kb on - strandat 589.829 kb on - strandat 590.031 kb on + strand, within DZA65_RS02740at 590.031 kb on + strand, within DZA65_RS02740at 590.071 kb on - strand, within DZA65_RS02740at 590.071 kb on - strand, within DZA65_RS02740at 590.085 kb on + strand, within DZA65_RS02740at 590.086 kb on - strand, within DZA65_RS02740at 590.088 kb on + strand, within DZA65_RS02740at 590.142 kb on + strand, within DZA65_RS02740at 590.142 kb on + strand, within DZA65_RS02740at 590.142 kb on + strand, within DZA65_RS02740at 590.143 kb on - strand, within DZA65_RS02740at 590.143 kb on - strandat 590.143 kb on - strand, within DZA65_RS02740at 590.143 kb on - strand, within DZA65_RS02740at 590.146 kb on + strand, within DZA65_RS02740at 590.147 kb on - strand, within DZA65_RS02740at 590.196 kb on + strand, within DZA65_RS02740at 590.196 kb on + strand, within DZA65_RS02740at 590.197 kb on - strand, within DZA65_RS02740at 590.197 kb on - strand, within DZA65_RS02740at 590.221 kb on + strand, within DZA65_RS02740at 590.221 kb on + strand, within DZA65_RS02740at 590.222 kb on - strand, within DZA65_RS02740at 590.242 kb on + strand, within DZA65_RS02740at 590.242 kb on + strand, within DZA65_RS02740at 590.242 kb on + strand, within DZA65_RS02740at 590.242 kb on + strand, within DZA65_RS02740at 590.242 kb on + strand, within DZA65_RS02740at 590.243 kb on - strand, within DZA65_RS02740at 590.295 kb on - strand, within DZA65_RS02740at 590.298 kb on + strand, within DZA65_RS02740at 590.298 kb on + strand, within DZA65_RS02740at 590.298 kb on + strand, within DZA65_RS02740at 590.299 kb on - strand, within DZA65_RS02740at 590.299 kb on - strand, within DZA65_RS02740at 590.299 kb on - strand, within DZA65_RS02740at 590.307 kb on + strand, within DZA65_RS02740at 590.308 kb on - strand, within DZA65_RS02740at 590.311 kb on + strand, within DZA65_RS02740at 590.358 kb on - strand, within DZA65_RS02740at 590.377 kb on - strand, within DZA65_RS02740at 590.377 kb on - strand, within DZA65_RS02740at 590.466 kb on + strand, within DZA65_RS02740at 590.466 kb on + strand, within DZA65_RS02740at 590.467 kb on - strand, within DZA65_RS02740at 590.490 kb on + strand, within DZA65_RS02740at 590.530 kb on + strand, within DZA65_RS02740at 590.530 kb on + strand, within DZA65_RS02740at 590.531 kb on - strand, within DZA65_RS02740at 590.531 kb on - strand, within DZA65_RS02740at 590.541 kb on + strand, within DZA65_RS02740at 590.542 kb on - strand, within DZA65_RS02740at 590.607 kb on + strand, within DZA65_RS02740at 590.608 kb on - strand, within DZA65_RS02740at 590.644 kb on + strand, within DZA65_RS02740at 590.644 kb on + strand, within DZA65_RS02740at 590.644 kb on + strand, within DZA65_RS02740at 590.645 kb on - strand, within DZA65_RS02740at 590.645 kb on - strand, within DZA65_RS02740at 590.645 kb on - strand, within DZA65_RS02740at 590.645 kb on - strand, within DZA65_RS02740at 590.724 kb on + strand, within DZA65_RS02740at 590.725 kb on - strand, within DZA65_RS02740at 590.758 kb on + strand, within DZA65_RS02740at 590.758 kb on + strand, within DZA65_RS02740at 590.758 kb on + strand, within DZA65_RS02740at 590.826 kb on + strand, within DZA65_RS02740at 590.826 kb on + strand, within DZA65_RS02740at 590.827 kb on - strand, within DZA65_RS02740

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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587,847 + DZA65_RS02730 0.28 +0.6
587,847 + DZA65_RS02730 0.28 +0.8
587,847 + DZA65_RS02730 0.28 -0.1
587,847 + DZA65_RS02730 0.28 +3.1
587,871 + DZA65_RS02730 0.29 -1.2
588,057 - DZA65_RS02730 0.43 +0.7
588,098 + DZA65_RS02730 0.46 +0.8
588,098 + DZA65_RS02730 0.46 -1.7
588,098 + DZA65_RS02730 0.46 +0.0
588,123 - DZA65_RS02730 0.48 +0.6
588,171 + DZA65_RS02730 0.51 -1.1
588,171 + DZA65_RS02730 0.51 +0.5
588,171 + DZA65_RS02730 0.51 +0.4
588,171 + DZA65_RS02730 0.51 +0.9
588,172 - -1.8
588,193 + DZA65_RS02730 0.53 -0.1
588,243 - +0.7
588,273 + DZA65_RS02730 0.58 -0.5
588,291 - DZA65_RS02730 0.60 -0.3
588,340 - DZA65_RS02730 0.63 -0.2
588,340 - DZA65_RS02730 0.63 +0.9
588,357 + DZA65_RS02730 0.64 +0.6
588,358 - DZA65_RS02730 0.64 +1.8
588,358 - DZA65_RS02730 0.64 -1.8
588,358 - DZA65_RS02730 0.64 -0.0
588,398 - DZA65_RS02730 0.67 +0.2
588,446 - DZA65_RS02730 0.71 -0.5
588,513 + DZA65_RS02730 0.76 +1.6
588,523 + DZA65_RS02730 0.76 -0.4
588,752 + +0.4
588,781 + -0.1
588,874 - +0.1
588,971 + DZA65_RS02735 0.13 +0.8
588,971 + DZA65_RS02735 0.13 -2.2
588,971 + DZA65_RS02735 0.13 +1.0
588,971 + DZA65_RS02735 0.13 -0.5
588,971 + DZA65_RS02735 0.13 +0.2
588,972 - DZA65_RS02735 0.13 +0.5
588,972 - DZA65_RS02735 0.13 -1.1
589,075 + DZA65_RS02735 0.24 +0.6
589,075 + DZA65_RS02735 0.24 -0.1
589,076 - DZA65_RS02735 0.24 -0.1
589,076 - DZA65_RS02735 0.24 -0.2
589,076 - DZA65_RS02735 0.24 +1.0
589,076 - DZA65_RS02735 0.24 +0.5
589,096 + DZA65_RS02735 0.26 +0.7
589,096 + DZA65_RS02735 0.26 +0.9
589,097 - DZA65_RS02735 0.26 +2.6
589,107 - DZA65_RS02735 0.27 -0.7
589,140 + DZA65_RS02735 0.30 +0.4
589,225 + DZA65_RS02735 0.39 +0.3
589,225 + DZA65_RS02735 0.39 -0.4
589,225 + DZA65_RS02735 0.39 +0.0
589,225 + DZA65_RS02735 0.39 +1.8
589,225 + DZA65_RS02735 0.39 -0.5
589,226 - DZA65_RS02735 0.39 +0.3
589,233 + +1.8
589,234 - DZA65_RS02735 0.40 -0.3
589,234 - DZA65_RS02735 0.40 +0.2
589,251 + DZA65_RS02735 0.41 +0.9
589,252 - DZA65_RS02735 0.42 +0.4
589,252 - DZA65_RS02735 0.42 -1.1
589,262 + DZA65_RS02735 0.43 -0.5
589,263 - DZA65_RS02735 0.43 +0.2
589,263 - -0.1
589,264 + DZA65_RS02735 0.43 -1.1
589,304 + DZA65_RS02735 0.47 -0.7
589,304 + DZA65_RS02735 0.47 +0.2
589,305 - DZA65_RS02735 0.47 +0.5
589,305 - DZA65_RS02735 0.47 -0.3
589,305 - DZA65_RS02735 0.47 +0.4
589,305 - DZA65_RS02735 0.47 +0.3
589,306 + DZA65_RS02735 0.47 -0.8
589,331 + DZA65_RS02735 0.49 +0.2
589,337 - DZA65_RS02735 0.50 +0.1
589,407 + DZA65_RS02735 0.57 -2.1
589,408 - DZA65_RS02735 0.57 +0.6
589,412 + DZA65_RS02735 0.58 -0.7
589,427 + DZA65_RS02735 0.59 +0.4
589,427 + DZA65_RS02735 0.59 +0.3
589,428 - DZA65_RS02735 0.59 +0.1
589,428 - DZA65_RS02735 0.59 +0.7
589,433 - DZA65_RS02735 0.60 -0.5
589,433 - DZA65_RS02735 0.60 +0.3
589,443 + DZA65_RS02735 0.61 +0.3
589,465 + DZA65_RS02735 0.63 -0.2
589,467 + DZA65_RS02735 0.63 +0.8
589,468 - DZA65_RS02735 0.63 +0.2
589,468 - DZA65_RS02735 0.63 +0.8
589,547 - DZA65_RS02735 0.71 +1.2
589,573 - DZA65_RS02735 0.74 +0.5
589,616 + DZA65_RS02735 0.78 +0.1
589,622 + DZA65_RS02735 0.79 -0.2
589,622 + DZA65_RS02735 0.79 -0.2
589,623 - DZA65_RS02735 0.79 -0.1
589,645 - DZA65_RS02735 0.81 -0.0
589,696 - DZA65_RS02735 0.86 +0.8
589,745 + -0.7
589,746 - +0.3
589,819 - -0.7
589,829 - +0.2
589,829 - +0.3
590,031 + DZA65_RS02740 0.16 -1.5
590,031 + DZA65_RS02740 0.16 +0.0
590,071 - DZA65_RS02740 0.19 +0.7
590,071 - DZA65_RS02740 0.19 +0.1
590,085 + DZA65_RS02740 0.20 -0.0
590,086 - DZA65_RS02740 0.20 -0.1
590,088 + DZA65_RS02740 0.20 +0.3
590,142 + DZA65_RS02740 0.25 +0.7
590,142 + DZA65_RS02740 0.25 -1.8
590,142 + DZA65_RS02740 0.25 +0.6
590,143 - DZA65_RS02740 0.25 -0.4
590,143 - +0.8
590,143 - DZA65_RS02740 0.25 -0.8
590,143 - DZA65_RS02740 0.25 -0.2
590,146 + DZA65_RS02740 0.25 -0.0
590,147 - DZA65_RS02740 0.25 -0.4
590,196 + DZA65_RS02740 0.29 -0.5
590,196 + DZA65_RS02740 0.29 +1.6
590,197 - DZA65_RS02740 0.29 -0.3
590,197 - DZA65_RS02740 0.29 -0.1
590,221 + DZA65_RS02740 0.31 -0.3
590,221 + DZA65_RS02740 0.31 -0.2
590,222 - DZA65_RS02740 0.32 +0.9
590,242 + DZA65_RS02740 0.33 +0.2
590,242 + DZA65_RS02740 0.33 +1.2
590,242 + DZA65_RS02740 0.33 +0.0
590,242 + DZA65_RS02740 0.33 -1.6
590,242 + DZA65_RS02740 0.33 -1.5
590,243 - DZA65_RS02740 0.33 -0.3
590,295 - DZA65_RS02740 0.38 +1.5
590,298 + DZA65_RS02740 0.38 -0.8
590,298 + DZA65_RS02740 0.38 -0.0
590,298 + DZA65_RS02740 0.38 -0.8
590,299 - DZA65_RS02740 0.38 +0.7
590,299 - DZA65_RS02740 0.38 -1.1
590,299 - DZA65_RS02740 0.38 +0.9
590,307 + DZA65_RS02740 0.39 -0.8
590,308 - DZA65_RS02740 0.39 -0.5
590,311 + DZA65_RS02740 0.39 +0.7
590,358 - DZA65_RS02740 0.43 -0.0
590,377 - DZA65_RS02740 0.44 -0.4
590,377 - DZA65_RS02740 0.44 -0.2
590,466 + DZA65_RS02740 0.52 -0.6
590,466 + DZA65_RS02740 0.52 -1.6
590,467 - DZA65_RS02740 0.52 -0.0
590,490 + DZA65_RS02740 0.54 +1.6
590,530 + DZA65_RS02740 0.57 -0.5
590,530 + DZA65_RS02740 0.57 +1.6
590,531 - DZA65_RS02740 0.57 -1.5
590,531 - DZA65_RS02740 0.57 -0.2
590,541 + DZA65_RS02740 0.58 +0.3
590,542 - DZA65_RS02740 0.58 +0.1
590,607 + DZA65_RS02740 0.63 -0.7
590,608 - DZA65_RS02740 0.63 +0.6
590,644 + DZA65_RS02740 0.66 -1.8
590,644 + DZA65_RS02740 0.66 +0.1
590,644 + DZA65_RS02740 0.66 +0.5
590,645 - DZA65_RS02740 0.66 -0.4
590,645 - DZA65_RS02740 0.66 +0.3
590,645 - DZA65_RS02740 0.66 -0.7
590,645 - DZA65_RS02740 0.66 -0.1
590,724 + DZA65_RS02740 0.73 +1.7
590,725 - DZA65_RS02740 0.73 +1.6
590,758 + DZA65_RS02740 0.76 +0.5
590,758 + DZA65_RS02740 0.76 +1.3
590,758 + DZA65_RS02740 0.76 +0.1
590,826 + DZA65_RS02740 0.81 +0.1
590,826 + DZA65_RS02740 0.81 -0.1
590,827 - DZA65_RS02740 0.81 +0.3

Or see this region's nucleotide sequence