Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02730

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS02725 and DZA65_RS02730 overlap by 4 nucleotidesDZA65_RS02730 and DZA65_RS02735 overlap by 8 nucleotidesDZA65_RS02735 and DZA65_RS02740 are separated by 9 nucleotides DZA65_RS02725: DZA65_RS02725 - capsular polysaccharide biosynthesis protein, at 586,258 to 587,469 _RS02725 DZA65_RS02730: DZA65_RS02730 - hypothetical protein, at 587,466 to 588,848 _RS02730 DZA65_RS02735: DZA65_RS02735 - glycosyltransferase, at 588,841 to 589,830 _RS02735 DZA65_RS02740: DZA65_RS02740 - glycosyltransferase family 4 protein, at 589,840 to 591,051 _RS02740 Position (kb) 587 588 589Strain fitness (log2 ratio) -2 -1 0 1 2 3at 586.567 kb on + strand, within DZA65_RS02725at 586.586 kb on - strand, within DZA65_RS02725at 586.630 kb on - strand, within DZA65_RS02725at 586.643 kb on + strand, within DZA65_RS02725at 586.643 kb on + strand, within DZA65_RS02725at 586.717 kb on + strand, within DZA65_RS02725at 586.717 kb on + strand, within DZA65_RS02725at 586.748 kb on + strand, within DZA65_RS02725at 586.748 kb on + strand, within DZA65_RS02725at 586.748 kb on + strand, within DZA65_RS02725at 586.748 kb on + strand, within DZA65_RS02725at 586.748 kb on + strand, within DZA65_RS02725at 586.749 kb on - strand, within DZA65_RS02725at 586.749 kb on - strand, within DZA65_RS02725at 586.749 kb on - strand, within DZA65_RS02725at 586.752 kb on + strand, within DZA65_RS02725at 586.761 kb on + strand, within DZA65_RS02725at 586.761 kb on + strand, within DZA65_RS02725at 586.777 kb on - strand, within DZA65_RS02725at 586.780 kb on - strand, within DZA65_RS02725at 586.791 kb on + strand, within DZA65_RS02725at 586.792 kb on - strand, within DZA65_RS02725at 586.806 kb on + strand, within DZA65_RS02725at 586.818 kb on + strand, within DZA65_RS02725at 586.818 kb on + strand, within DZA65_RS02725at 586.818 kb on + strand, within DZA65_RS02725at 586.818 kb on + strand, within DZA65_RS02725at 586.818 kb on + strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.819 kb on - strand, within DZA65_RS02725at 586.821 kb on + strand, within DZA65_RS02725at 586.821 kb on + strand, within DZA65_RS02725at 586.822 kb on - strand, within DZA65_RS02725at 586.896 kb on + strand, within DZA65_RS02725at 586.897 kb on - strand, within DZA65_RS02725at 586.909 kb on - strand, within DZA65_RS02725at 586.918 kb on - strand, within DZA65_RS02725at 586.918 kb on - strand, within DZA65_RS02725at 586.962 kb on - strand, within DZA65_RS02725at 587.010 kb on + strand, within DZA65_RS02725at 587.010 kb on + strand, within DZA65_RS02725at 587.010 kb on + strand, within DZA65_RS02725at 587.049 kb on + strand, within DZA65_RS02725at 587.062 kb on + strand, within DZA65_RS02725at 587.202 kb on + strand, within DZA65_RS02725at 587.202 kb on + strand, within DZA65_RS02725at 587.203 kb on - strand, within DZA65_RS02725at 587.207 kb on + strand, within DZA65_RS02725at 587.217 kb on - strand, within DZA65_RS02725at 587.350 kb on - strandat 587.487 kb on + strandat 587.499 kb on + strandat 587.499 kb on + strandat 587.499 kb on + strandat 587.499 kb on + strandat 587.519 kb on - strandat 587.538 kb on + strandat 587.538 kb on + strandat 587.539 kb on - strandat 587.609 kb on + strand, within DZA65_RS02730at 587.623 kb on - strand, within DZA65_RS02730at 587.623 kb on - strand, within DZA65_RS02730at 587.670 kb on + strand, within DZA65_RS02730at 587.670 kb on + strand, within DZA65_RS02730at 587.670 kb on + strand, within DZA65_RS02730at 587.670 kb on + strand, within DZA65_RS02730at 587.671 kb on - strand, within DZA65_RS02730at 587.671 kb on - strand, within DZA65_RS02730at 587.702 kb on + strand, within DZA65_RS02730at 587.702 kb on + strand, within DZA65_RS02730at 587.703 kb on - strand, within DZA65_RS02730at 587.703 kb on - strand, within DZA65_RS02730at 587.703 kb on - strand, within DZA65_RS02730at 587.703 kb on - strand, within DZA65_RS02730at 587.703 kb on - strand, within DZA65_RS02730at 587.723 kb on - strand, within DZA65_RS02730at 587.828 kb on + strand, within DZA65_RS02730at 587.835 kb on + strand, within DZA65_RS02730at 587.836 kb on - strand, within DZA65_RS02730at 587.836 kb on - strand, within DZA65_RS02730at 587.836 kb on - strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.847 kb on + strand, within DZA65_RS02730at 587.871 kb on + strand, within DZA65_RS02730at 588.057 kb on - strand, within DZA65_RS02730at 588.098 kb on + strand, within DZA65_RS02730at 588.098 kb on + strand, within DZA65_RS02730at 588.098 kb on + strand, within DZA65_RS02730at 588.123 kb on - strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.171 kb on + strand, within DZA65_RS02730at 588.172 kb on - strandat 588.193 kb on + strand, within DZA65_RS02730at 588.243 kb on - strandat 588.273 kb on + strand, within DZA65_RS02730at 588.291 kb on - strand, within DZA65_RS02730at 588.340 kb on - strand, within DZA65_RS02730at 588.340 kb on - strand, within DZA65_RS02730at 588.357 kb on + strand, within DZA65_RS02730at 588.358 kb on - strand, within DZA65_RS02730at 588.358 kb on - strand, within DZA65_RS02730at 588.358 kb on - strand, within DZA65_RS02730at 588.398 kb on - strand, within DZA65_RS02730at 588.446 kb on - strand, within DZA65_RS02730at 588.513 kb on + strand, within DZA65_RS02730at 588.523 kb on + strand, within DZA65_RS02730at 588.752 kb on + strandat 588.781 kb on + strandat 588.874 kb on - strandat 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.971 kb on + strand, within DZA65_RS02735at 588.972 kb on - strand, within DZA65_RS02735at 588.972 kb on - strand, within DZA65_RS02735at 589.075 kb on + strand, within DZA65_RS02735at 589.075 kb on + strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.076 kb on - strand, within DZA65_RS02735at 589.096 kb on + strand, within DZA65_RS02735at 589.096 kb on + strand, within DZA65_RS02735at 589.097 kb on - strand, within DZA65_RS02735at 589.107 kb on - strand, within DZA65_RS02735at 589.140 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.225 kb on + strand, within DZA65_RS02735at 589.226 kb on - strand, within DZA65_RS02735at 589.233 kb on + strandat 589.234 kb on - strand, within DZA65_RS02735at 589.234 kb on - strand, within DZA65_RS02735at 589.251 kb on + strand, within DZA65_RS02735at 589.252 kb on - strand, within DZA65_RS02735at 589.252 kb on - strand, within DZA65_RS02735at 589.262 kb on + strand, within DZA65_RS02735at 589.263 kb on - strand, within DZA65_RS02735at 589.263 kb on - strandat 589.264 kb on + strand, within DZA65_RS02735at 589.304 kb on + strand, within DZA65_RS02735at 589.304 kb on + strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.305 kb on - strand, within DZA65_RS02735at 589.306 kb on + strand, within DZA65_RS02735at 589.331 kb on + strand, within DZA65_RS02735at 589.337 kb on - strand, within DZA65_RS02735at 589.407 kb on + strand, within DZA65_RS02735at 589.408 kb on - strand, within DZA65_RS02735at 589.412 kb on + strand, within DZA65_RS02735at 589.427 kb on + strand, within DZA65_RS02735at 589.427 kb on + strand, within DZA65_RS02735at 589.428 kb on - strand, within DZA65_RS02735at 589.428 kb on - strand, within DZA65_RS02735at 589.433 kb on - strand, within DZA65_RS02735at 589.433 kb on - strand, within DZA65_RS02735at 589.443 kb on + strand, within DZA65_RS02735at 589.465 kb on + strand, within DZA65_RS02735at 589.467 kb on + strand, within DZA65_RS02735at 589.468 kb on - strand, within DZA65_RS02735at 589.468 kb on - strand, within DZA65_RS02735at 589.547 kb on - strand, within DZA65_RS02735at 589.573 kb on - strand, within DZA65_RS02735at 589.616 kb on + strand, within DZA65_RS02735at 589.622 kb on + strand, within DZA65_RS02735at 589.622 kb on + strand, within DZA65_RS02735at 589.623 kb on - strand, within DZA65_RS02735at 589.645 kb on - strand, within DZA65_RS02735at 589.696 kb on - strand, within DZA65_RS02735at 589.745 kb on + strandat 589.746 kb on - strandat 589.819 kb on - strandat 589.829 kb on - strandat 589.829 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
586,567 + DZA65_RS02725 0.25 +0.3
586,586 - DZA65_RS02725 0.27 +0.8
586,630 - DZA65_RS02725 0.31 -2.7
586,643 + DZA65_RS02725 0.32 +1.2
586,643 + DZA65_RS02725 0.32 -0.3
586,717 + DZA65_RS02725 0.38 -0.4
586,717 + DZA65_RS02725 0.38 +1.5
586,748 + DZA65_RS02725 0.40 -0.2
586,748 + DZA65_RS02725 0.40 +0.7
586,748 + DZA65_RS02725 0.40 +0.9
586,748 + DZA65_RS02725 0.40 -2.1
586,748 + DZA65_RS02725 0.40 +0.8
586,749 - DZA65_RS02725 0.41 -0.4
586,749 - DZA65_RS02725 0.41 -1.8
586,749 - DZA65_RS02725 0.41 +0.2
586,752 + DZA65_RS02725 0.41 +0.8
586,761 + DZA65_RS02725 0.42 -0.3
586,761 + DZA65_RS02725 0.42 +1.8
586,777 - DZA65_RS02725 0.43 -2.1
586,780 - DZA65_RS02725 0.43 -1.8
586,791 + DZA65_RS02725 0.44 +0.6
586,792 - DZA65_RS02725 0.44 +0.7
586,806 + DZA65_RS02725 0.45 -1.8
586,818 + DZA65_RS02725 0.46 -0.4
586,818 + DZA65_RS02725 0.46 -0.2
586,818 + DZA65_RS02725 0.46 +0.9
586,818 + DZA65_RS02725 0.46 +0.9
586,818 + DZA65_RS02725 0.46 -2.1
586,819 - DZA65_RS02725 0.46 -0.1
586,819 - DZA65_RS02725 0.46 +0.7
586,819 - DZA65_RS02725 0.46 +0.6
586,819 - DZA65_RS02725 0.46 +1.5
586,819 - DZA65_RS02725 0.46 -1.1
586,819 - DZA65_RS02725 0.46 +1.9
586,819 - DZA65_RS02725 0.46 +0.7
586,819 - DZA65_RS02725 0.46 +0.1
586,819 - DZA65_RS02725 0.46 +0.1
586,819 - DZA65_RS02725 0.46 -2.3
586,821 + DZA65_RS02725 0.46 +0.5
586,821 + DZA65_RS02725 0.46 -0.7
586,822 - DZA65_RS02725 0.47 -0.1
586,896 + DZA65_RS02725 0.53 +0.2
586,897 - DZA65_RS02725 0.53 -0.2
586,909 - DZA65_RS02725 0.54 -0.2
586,918 - DZA65_RS02725 0.54 +0.6
586,918 - DZA65_RS02725 0.54 +0.5
586,962 - DZA65_RS02725 0.58 -1.1
587,010 + DZA65_RS02725 0.62 -0.2
587,010 + DZA65_RS02725 0.62 -0.9
587,010 + DZA65_RS02725 0.62 -0.5
587,049 + DZA65_RS02725 0.65 +0.2
587,062 + DZA65_RS02725 0.66 +0.6
587,202 + DZA65_RS02725 0.78 +1.8
587,202 + DZA65_RS02725 0.78 +0.0
587,203 - DZA65_RS02725 0.78 -0.5
587,207 + DZA65_RS02725 0.78 -0.0
587,217 - DZA65_RS02725 0.79 -0.5
587,350 - -0.5
587,487 + -1.1
587,499 + -1.4
587,499 + -1.0
587,499 + +1.2
587,499 + +0.5
587,519 - +0.8
587,538 + +1.6
587,538 + +1.0
587,539 - -0.8
587,609 + DZA65_RS02730 0.10 -1.5
587,623 - DZA65_RS02730 0.11 +0.7
587,623 - DZA65_RS02730 0.11 +0.8
587,670 + DZA65_RS02730 0.15 -1.2
587,670 + DZA65_RS02730 0.15 +0.9
587,670 + DZA65_RS02730 0.15 +1.2
587,670 + DZA65_RS02730 0.15 -0.2
587,671 - DZA65_RS02730 0.15 +1.3
587,671 - DZA65_RS02730 0.15 +0.8
587,702 + DZA65_RS02730 0.17 +0.1
587,702 + DZA65_RS02730 0.17 +0.1
587,703 - DZA65_RS02730 0.17 +0.8
587,703 - DZA65_RS02730 0.17 +0.5
587,703 - DZA65_RS02730 0.17 +0.1
587,703 - DZA65_RS02730 0.17 -0.3
587,703 - DZA65_RS02730 0.17 -1.8
587,723 - DZA65_RS02730 0.19 +0.6
587,828 + DZA65_RS02730 0.26 +0.3
587,835 + DZA65_RS02730 0.27 -0.6
587,836 - DZA65_RS02730 0.27 +0.3
587,836 - DZA65_RS02730 0.27 -0.3
587,836 - DZA65_RS02730 0.27 +1.6
587,847 + DZA65_RS02730 0.28 +0.6
587,847 + DZA65_RS02730 0.28 +0.8
587,847 + DZA65_RS02730 0.28 -0.1
587,847 + DZA65_RS02730 0.28 +3.1
587,871 + DZA65_RS02730 0.29 -1.2
588,057 - DZA65_RS02730 0.43 +0.7
588,098 + DZA65_RS02730 0.46 +0.8
588,098 + DZA65_RS02730 0.46 -1.7
588,098 + DZA65_RS02730 0.46 +0.0
588,123 - DZA65_RS02730 0.48 +0.6
588,171 + DZA65_RS02730 0.51 -1.1
588,171 + DZA65_RS02730 0.51 +0.5
588,171 + DZA65_RS02730 0.51 +0.4
588,171 + DZA65_RS02730 0.51 +0.9
588,172 - -1.8
588,193 + DZA65_RS02730 0.53 -0.1
588,243 - +0.7
588,273 + DZA65_RS02730 0.58 -0.5
588,291 - DZA65_RS02730 0.60 -0.3
588,340 - DZA65_RS02730 0.63 -0.2
588,340 - DZA65_RS02730 0.63 +0.9
588,357 + DZA65_RS02730 0.64 +0.6
588,358 - DZA65_RS02730 0.64 +1.8
588,358 - DZA65_RS02730 0.64 -1.8
588,358 - DZA65_RS02730 0.64 -0.0
588,398 - DZA65_RS02730 0.67 +0.2
588,446 - DZA65_RS02730 0.71 -0.5
588,513 + DZA65_RS02730 0.76 +1.6
588,523 + DZA65_RS02730 0.76 -0.4
588,752 + +0.4
588,781 + -0.1
588,874 - +0.1
588,971 + DZA65_RS02735 0.13 +0.8
588,971 + DZA65_RS02735 0.13 -2.2
588,971 + DZA65_RS02735 0.13 +1.0
588,971 + DZA65_RS02735 0.13 -0.5
588,971 + DZA65_RS02735 0.13 +0.2
588,972 - DZA65_RS02735 0.13 +0.5
588,972 - DZA65_RS02735 0.13 -1.1
589,075 + DZA65_RS02735 0.24 +0.6
589,075 + DZA65_RS02735 0.24 -0.1
589,076 - DZA65_RS02735 0.24 -0.1
589,076 - DZA65_RS02735 0.24 -0.2
589,076 - DZA65_RS02735 0.24 +1.0
589,076 - DZA65_RS02735 0.24 +0.5
589,096 + DZA65_RS02735 0.26 +0.7
589,096 + DZA65_RS02735 0.26 +0.9
589,097 - DZA65_RS02735 0.26 +2.6
589,107 - DZA65_RS02735 0.27 -0.7
589,140 + DZA65_RS02735 0.30 +0.4
589,225 + DZA65_RS02735 0.39 +0.3
589,225 + DZA65_RS02735 0.39 -0.4
589,225 + DZA65_RS02735 0.39 +0.0
589,225 + DZA65_RS02735 0.39 +1.8
589,225 + DZA65_RS02735 0.39 -0.5
589,226 - DZA65_RS02735 0.39 +0.3
589,233 + +1.8
589,234 - DZA65_RS02735 0.40 -0.3
589,234 - DZA65_RS02735 0.40 +0.2
589,251 + DZA65_RS02735 0.41 +0.9
589,252 - DZA65_RS02735 0.42 +0.4
589,252 - DZA65_RS02735 0.42 -1.1
589,262 + DZA65_RS02735 0.43 -0.5
589,263 - DZA65_RS02735 0.43 +0.2
589,263 - -0.1
589,264 + DZA65_RS02735 0.43 -1.1
589,304 + DZA65_RS02735 0.47 -0.7
589,304 + DZA65_RS02735 0.47 +0.2
589,305 - DZA65_RS02735 0.47 +0.5
589,305 - DZA65_RS02735 0.47 -0.3
589,305 - DZA65_RS02735 0.47 +0.4
589,305 - DZA65_RS02735 0.47 +0.3
589,306 + DZA65_RS02735 0.47 -0.8
589,331 + DZA65_RS02735 0.49 +0.2
589,337 - DZA65_RS02735 0.50 +0.1
589,407 + DZA65_RS02735 0.57 -2.1
589,408 - DZA65_RS02735 0.57 +0.6
589,412 + DZA65_RS02735 0.58 -0.7
589,427 + DZA65_RS02735 0.59 +0.4
589,427 + DZA65_RS02735 0.59 +0.3
589,428 - DZA65_RS02735 0.59 +0.1
589,428 - DZA65_RS02735 0.59 +0.7
589,433 - DZA65_RS02735 0.60 -0.5
589,433 - DZA65_RS02735 0.60 +0.3
589,443 + DZA65_RS02735 0.61 +0.3
589,465 + DZA65_RS02735 0.63 -0.2
589,467 + DZA65_RS02735 0.63 +0.8
589,468 - DZA65_RS02735 0.63 +0.2
589,468 - DZA65_RS02735 0.63 +0.8
589,547 - DZA65_RS02735 0.71 +1.2
589,573 - DZA65_RS02735 0.74 +0.5
589,616 + DZA65_RS02735 0.78 +0.1
589,622 + DZA65_RS02735 0.79 -0.2
589,622 + DZA65_RS02735 0.79 -0.2
589,623 - DZA65_RS02735 0.79 -0.1
589,645 - DZA65_RS02735 0.81 -0.0
589,696 - DZA65_RS02735 0.86 +0.8
589,745 + -0.7
589,746 - +0.3
589,819 - -0.7
589,829 - +0.2
589,829 - +0.3

Or see this region's nucleotide sequence