Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02595 and DZA65_RS02600 are separated by 138 nucleotides DZA65_RS02600 and DZA65_RS02605 are separated by 17 nucleotides
DZA65_RS02595: DZA65_RS02595 - LysR family transcriptional regulator, at 556,618 to 557,556
_RS02595
DZA65_RS02600: DZA65_RS02600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 557,695 to 558,729
_RS02600
DZA65_RS02605: DZA65_RS02605 - oxidoreductase, at 558,747 to 559,787
_RS02605
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 556.696 kb on + strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.812 kb on + strand, within DZA65_RS02595 at 556.813 kb on - strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.835 kb on - strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.929 kb on - strand, within DZA65_RS02595 at 556.972 kb on + strand, within DZA65_RS02595 at 557.157 kb on + strand, within DZA65_RS02595 at 557.157 kb on + strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.175 kb on + strand, within DZA65_RS02595 at 557.175 kb on + strand, within DZA65_RS02595 at 557.213 kb on - strand, within DZA65_RS02595 at 557.230 kb on + strand, within DZA65_RS02595 at 557.231 kb on - strand, within DZA65_RS02595 at 557.231 kb on - strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.357 kb on + strand, within DZA65_RS02595 at 557.357 kb on + strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.410 kb on + strand, within DZA65_RS02595 at 557.440 kb on + strand, within DZA65_RS02595 at 557.440 kb on + strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.523 kb on + strand at 557.524 kb on - strand at 557.528 kb on + strand at 557.528 kb on + strand at 557.529 kb on - strand at 557.529 kb on - strand at 557.569 kb on + strand at 557.570 kb on - strand at 557.627 kb on - strand at 557.635 kb on + strand at 557.635 kb on + strand at 557.635 kb on + strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.662 kb on - strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.664 kb on - strand at 557.846 kb on - strand, within DZA65_RS02600 at 557.880 kb on + strand at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.243 kb on + strand, within DZA65_RS02600 at 558.262 kb on - strand, within DZA65_RS02600 at 558.302 kb on - strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.320 kb on - strand, within DZA65_RS02600 at 558.510 kb on - strand, within DZA65_RS02600 at 558.791 kb on + strand at 558.791 kb on + strand at 558.791 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.809 kb on + strand at 558.810 kb on - strand at 558.810 kb on - strand at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.874 kb on + strand, within DZA65_RS02605 at 558.875 kb on - strand, within DZA65_RS02605 at 558.875 kb on - strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.949 kb on + strand, within DZA65_RS02605 at 558.950 kb on - strand, within DZA65_RS02605 at 558.950 kb on - strand, within DZA65_RS02605 at 558.972 kb on + strand, within DZA65_RS02605 at 558.973 kb on - strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.008 kb on + strand, within DZA65_RS02605 at 559.009 kb on - strand, within DZA65_RS02605 at 559.009 kb on - strand, within DZA65_RS02605 at 559.056 kb on + strand, within DZA65_RS02605 at 559.056 kb on + strand, within DZA65_RS02605 at 559.056 kb on + strand, within DZA65_RS02605 at 559.057 kb on - strand, within DZA65_RS02605 at 559.057 kb on - strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.060 kb on + strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.061 kb on - strand, within DZA65_RS02605 at 559.094 kb on + strand, within DZA65_RS02605 at 559.119 kb on - strand, within DZA65_RS02605 at 559.140 kb on + strand at 559.141 kb on - strand, within DZA65_RS02605 at 559.141 kb on - strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.230 kb on + strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.231 kb on - strand, within DZA65_RS02605 at 559.274 kb on + strand, within DZA65_RS02605 at 559.275 kb on - strand, within DZA65_RS02605 at 559.275 kb on - strand, within DZA65_RS02605 at 559.359 kb on + strand, within DZA65_RS02605 at 559.359 kb on + strand, within DZA65_RS02605 at 559.359 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.386 kb on + strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.387 kb on - strand, within DZA65_RS02605 at 559.527 kb on - strand, within DZA65_RS02605 at 559.591 kb on + strand, within DZA65_RS02605 at 559.591 kb on + strand, within DZA65_RS02605 at 559.592 kb on - strand, within DZA65_RS02605 at 559.674 kb on - strand, within DZA65_RS02605 at 559.674 kb on - strand, within DZA65_RS02605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 556,696 + -0.5 556,696 + +0.1 556,696 + -0.9 556,812 + DZA65_RS02595 0.21 -0.5 556,813 - DZA65_RS02595 0.21 -0.7 556,814 + DZA65_RS02595 0.21 -0.6 556,814 + DZA65_RS02595 0.21 +0.8 556,814 + DZA65_RS02595 0.21 -0.0 556,814 + DZA65_RS02595 0.21 -0.2 556,814 + DZA65_RS02595 0.21 -0.1 556,814 + DZA65_RS02595 0.21 -1.8 556,815 - DZA65_RS02595 0.21 -1.6 556,815 - DZA65_RS02595 0.21 +1.0 556,815 - DZA65_RS02595 0.21 +1.2 556,815 - DZA65_RS02595 0.21 +0.1 556,815 - DZA65_RS02595 0.21 +1.1 556,835 - DZA65_RS02595 0.23 +1.9 556,928 + DZA65_RS02595 0.33 +0.9 556,928 + DZA65_RS02595 0.33 -0.4 556,928 + DZA65_RS02595 0.33 +0.5 556,928 + DZA65_RS02595 0.33 +1.0 556,928 + DZA65_RS02595 0.33 -2.3 556,929 - DZA65_RS02595 0.33 +0.5 556,972 + DZA65_RS02595 0.38 +0.3 557,157 + DZA65_RS02595 0.57 +0.7 557,157 + DZA65_RS02595 0.57 -0.2 557,158 - DZA65_RS02595 0.58 -0.8 557,158 - DZA65_RS02595 0.58 -0.2 557,158 - DZA65_RS02595 0.58 +0.6 557,175 + DZA65_RS02595 0.59 +0.0 557,175 + DZA65_RS02595 0.59 +0.7 557,213 - DZA65_RS02595 0.63 +0.0 557,230 + DZA65_RS02595 0.65 -0.7 557,231 - DZA65_RS02595 0.65 +1.5 557,231 - DZA65_RS02595 0.65 +0.5 557,327 + DZA65_RS02595 0.76 -0.2 557,327 + DZA65_RS02595 0.76 -3.0 557,327 + DZA65_RS02595 0.76 -0.3 557,328 - DZA65_RS02595 0.76 -0.7 557,328 - DZA65_RS02595 0.76 +0.2 557,328 - DZA65_RS02595 0.76 -1.4 557,357 + DZA65_RS02595 0.79 +0.3 557,357 + DZA65_RS02595 0.79 +0.4 557,358 - DZA65_RS02595 0.79 +0.4 557,358 - DZA65_RS02595 0.79 -0.7 557,358 - DZA65_RS02595 0.79 -0.4 557,358 - DZA65_RS02595 0.79 +0.6 557,410 + DZA65_RS02595 0.84 -1.8 557,440 + DZA65_RS02595 0.88 +0.6 557,440 + DZA65_RS02595 0.88 +0.2 557,441 - DZA65_RS02595 0.88 -0.9 557,441 - DZA65_RS02595 0.88 +1.1 557,441 - DZA65_RS02595 0.88 +0.5 557,441 - DZA65_RS02595 0.88 +1.2 557,523 + +0.8 557,524 - +1.7 557,528 + -0.9 557,528 + +0.3 557,529 - -0.3 557,529 - +0.8 557,569 + -0.9 557,570 - +0.5 557,627 - -0.2 557,635 + +1.6 557,635 + +0.2 557,635 + -0.1 557,636 - -0.0 557,636 - +0.7 557,636 - -0.3 557,636 - -0.4 557,636 - -1.2 557,662 - -0.4 557,663 + +0.2 557,663 + -1.1 557,663 + +0.5 557,663 + +1.5 557,663 + -0.7 557,663 + +0.5 557,663 + -0.0 557,664 - -2.1 557,846 - DZA65_RS02600 0.15 -0.6 557,880 + -0.1 557,880 + DZA65_RS02600 0.18 -0.7 557,880 + DZA65_RS02600 0.18 +1.7 557,880 + DZA65_RS02600 0.18 +0.6 557,880 + DZA65_RS02600 0.18 -0.8 557,881 - DZA65_RS02600 0.18 -0.4 557,881 - DZA65_RS02600 0.18 -1.0 557,881 - DZA65_RS02600 0.18 -0.4 557,881 - DZA65_RS02600 0.18 -0.8 558,215 + DZA65_RS02600 0.50 +0.5 558,215 + DZA65_RS02600 0.50 -0.6 558,215 + DZA65_RS02600 0.50 -0.2 558,215 + DZA65_RS02600 0.50 -1.5 558,216 - DZA65_RS02600 0.50 +0.3 558,216 - DZA65_RS02600 0.50 -1.5 558,216 - DZA65_RS02600 0.50 -1.3 558,216 - DZA65_RS02600 0.50 +0.1 558,243 + DZA65_RS02600 0.53 -1.1 558,262 - DZA65_RS02600 0.55 +0.5 558,302 - DZA65_RS02600 0.59 -2.8 558,319 + DZA65_RS02600 0.60 +0.2 558,319 + DZA65_RS02600 0.60 -1.7 558,319 + DZA65_RS02600 0.60 -0.8 558,319 + DZA65_RS02600 0.60 -1.6 558,319 + DZA65_RS02600 0.60 -0.8 558,320 - DZA65_RS02600 0.60 +0.7 558,510 - DZA65_RS02600 0.79 -0.8 558,791 + +1.2 558,791 + +0.7 558,791 + +1.1 558,809 + +0.9 558,809 + -0.3 558,809 + +0.7 558,809 + -0.1 558,809 + +0.5 558,809 + +0.0 558,810 - -0.3 558,810 - +0.5 558,874 + DZA65_RS02605 0.12 +1.3 558,874 + DZA65_RS02605 0.12 +0.2 558,874 + DZA65_RS02605 0.12 -0.4 558,874 + DZA65_RS02605 0.12 -0.8 558,874 + DZA65_RS02605 0.12 +0.7 558,875 - DZA65_RS02605 0.12 -1.1 558,875 - DZA65_RS02605 0.12 +2.1 558,949 + DZA65_RS02605 0.19 -0.0 558,949 + DZA65_RS02605 0.19 -0.3 558,949 + DZA65_RS02605 0.19 +0.2 558,949 + DZA65_RS02605 0.19 +0.9 558,949 + DZA65_RS02605 0.19 +1.9 558,949 + DZA65_RS02605 0.19 +0.5 558,949 + DZA65_RS02605 0.19 +1.1 558,950 - DZA65_RS02605 0.20 -1.8 558,950 - DZA65_RS02605 0.20 -0.2 558,972 + DZA65_RS02605 0.22 +0.7 558,973 - DZA65_RS02605 0.22 +0.0 559,008 + DZA65_RS02605 0.25 -0.3 559,008 + DZA65_RS02605 0.25 -0.6 559,008 + DZA65_RS02605 0.25 -0.4 559,008 + DZA65_RS02605 0.25 +0.5 559,008 + DZA65_RS02605 0.25 +0.5 559,009 - DZA65_RS02605 0.25 +1.3 559,009 - DZA65_RS02605 0.25 +0.3 559,056 + DZA65_RS02605 0.30 -0.8 559,056 + DZA65_RS02605 0.30 -0.1 559,056 + DZA65_RS02605 0.30 -1.5 559,057 - DZA65_RS02605 0.30 +0.2 559,057 - DZA65_RS02605 0.30 -1.1 559,060 + DZA65_RS02605 0.30 +0.3 559,060 + DZA65_RS02605 0.30 -0.2 559,060 + DZA65_RS02605 0.30 +0.9 559,060 + DZA65_RS02605 0.30 +0.7 559,060 + DZA65_RS02605 0.30 -0.7 559,060 + DZA65_RS02605 0.30 -2.3 559,060 + DZA65_RS02605 0.30 +0.2 559,060 + DZA65_RS02605 0.30 -0.3 559,060 + DZA65_RS02605 0.30 +1.0 559,060 + DZA65_RS02605 0.30 -0.2 559,060 + DZA65_RS02605 0.30 -0.1 559,060 + DZA65_RS02605 0.30 -1.8 559,060 + DZA65_RS02605 0.30 -2.0 559,060 + DZA65_RS02605 0.30 -0.7 559,060 + DZA65_RS02605 0.30 +0.8 559,060 + DZA65_RS02605 0.30 +0.3 559,060 + DZA65_RS02605 0.30 -0.7 559,061 - DZA65_RS02605 0.30 -0.1 559,061 - DZA65_RS02605 0.30 -0.7 559,061 - DZA65_RS02605 0.30 -1.2 559,061 - DZA65_RS02605 0.30 -0.5 559,061 - DZA65_RS02605 0.30 +0.2 559,061 - DZA65_RS02605 0.30 +0.1 559,061 - DZA65_RS02605 0.30 -0.3 559,061 - DZA65_RS02605 0.30 -0.3 559,061 - DZA65_RS02605 0.30 +0.2 559,061 - DZA65_RS02605 0.30 -0.4 559,061 - DZA65_RS02605 0.30 +0.5 559,061 - DZA65_RS02605 0.30 -0.5 559,061 - DZA65_RS02605 0.30 -0.2 559,061 - DZA65_RS02605 0.30 -1.1 559,061 - DZA65_RS02605 0.30 +0.1 559,061 - DZA65_RS02605 0.30 +0.5 559,061 - DZA65_RS02605 0.30 -0.5 559,061 - DZA65_RS02605 0.30 +1.5 559,094 + DZA65_RS02605 0.33 -0.5 559,119 - DZA65_RS02605 0.36 +2.2 559,140 + -1.1 559,141 - DZA65_RS02605 0.38 -0.2 559,141 - DZA65_RS02605 0.38 +0.5 559,230 + DZA65_RS02605 0.46 +0.1 559,230 + DZA65_RS02605 0.46 -0.3 559,230 + DZA65_RS02605 0.46 -1.8 559,230 + DZA65_RS02605 0.46 +1.3 559,231 - DZA65_RS02605 0.46 +0.1 559,231 - DZA65_RS02605 0.46 -0.8 559,231 - DZA65_RS02605 0.46 -1.5 559,231 - DZA65_RS02605 0.46 -0.2 559,231 - DZA65_RS02605 0.46 -1.7 559,274 + DZA65_RS02605 0.51 -0.5 559,275 - DZA65_RS02605 0.51 +0.5 559,275 - DZA65_RS02605 0.51 +0.9 559,359 + DZA65_RS02605 0.59 +0.2 559,359 + DZA65_RS02605 0.59 +0.0 559,359 + DZA65_RS02605 0.59 +1.5 559,386 + DZA65_RS02605 0.61 +1.3 559,386 + DZA65_RS02605 0.61 +0.5 559,386 + DZA65_RS02605 0.61 +1.7 559,386 + DZA65_RS02605 0.61 -1.1 559,386 + DZA65_RS02605 0.61 -0.5 559,387 - DZA65_RS02605 0.61 +0.7 559,387 - DZA65_RS02605 0.61 +1.0 559,387 - DZA65_RS02605 0.61 +1.7 559,387 - DZA65_RS02605 0.61 -1.1 559,387 - DZA65_RS02605 0.61 +0.8 559,527 - DZA65_RS02605 0.75 -1.3 559,591 + DZA65_RS02605 0.81 -0.0 559,591 + DZA65_RS02605 0.81 -0.5 559,592 - DZA65_RS02605 0.81 -0.5 559,674 - DZA65_RS02605 0.89 +0.3 559,674 - DZA65_RS02605 0.89 +0.1
Or see this region's nucleotide sequence