Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02550 and DZA65_RS02555 are separated by 61 nucleotides DZA65_RS02555 and DZA65_RS02560 overlap by 4 nucleotides
DZA65_RS02550: DZA65_RS02550 - ABC transporter ATP-binding protein, at 548,486 to 549,301
_RS02550
DZA65_RS02555: DZA65_RS02555 - ABC transporter substrate-binding protein, at 549,363 to 550,304
_RS02555
DZA65_RS02560: DZA65_RS02560 - iron ABC transporter permease, at 550,301 to 551,299
_RS02560
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 548.389 kb on - strand at 548.415 kb on - strand at 548.428 kb on - strand at 548.428 kb on - strand at 548.508 kb on + strand at 548.509 kb on - strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.560 kb on + strand at 548.561 kb on - strand at 548.561 kb on - strand at 548.575 kb on + strand, within DZA65_RS02550 at 548.576 kb on - strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.696 kb on - strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.796 kb on + strand, within DZA65_RS02550 at 549.072 kb on + strand, within DZA65_RS02550 at 549.072 kb on + strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.185 kb on + strand, within DZA65_RS02550 at 549.211 kb on + strand, within DZA65_RS02550 at 549.283 kb on + strand at 549.284 kb on - strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.314 kb on + strand at 549.314 kb on + strand at 549.315 kb on - strand at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.681 kb on + strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.745 kb on + strand, within DZA65_RS02555 at 549.746 kb on - strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.811 kb on - strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.962 kb on + strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.972 kb on - strand, within DZA65_RS02555 at 549.985 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.221 kb on + strand at 550.222 kb on - strand at 550.284 kb on + strand at 550.284 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.341 kb on + strand at 550.353 kb on + strand at 550.396 kb on + strand at 550.397 kb on - strand at 550.460 kb on + strand, within DZA65_RS02560 at 550.774 kb on + strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 551.298 kb on - strand at 551.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 548,389 - +0.1 548,415 - -0.1 548,428 - -0.8 548,428 - -0.4 548,508 + +1.4 548,509 - +1.9 548,517 + +0.1 548,517 + -0.2 548,517 + -0.0 548,560 + -0.0 548,561 - -0.4 548,561 - +0.1 548,575 + DZA65_RS02550 0.11 -0.1 548,576 - DZA65_RS02550 0.11 -0.3 548,695 + DZA65_RS02550 0.26 +0.7 548,695 + DZA65_RS02550 0.26 -0.1 548,696 - DZA65_RS02550 0.26 +1.2 548,792 + DZA65_RS02550 0.38 -0.7 548,792 + DZA65_RS02550 0.38 +0.3 548,792 + DZA65_RS02550 0.38 -1.5 548,792 + DZA65_RS02550 0.38 -0.3 548,792 + DZA65_RS02550 0.38 -0.2 548,792 + DZA65_RS02550 0.38 +1.3 548,792 + DZA65_RS02550 0.38 +0.6 548,792 + DZA65_RS02550 0.38 +0.7 548,792 + DZA65_RS02550 0.38 -0.5 548,792 + DZA65_RS02550 0.38 +0.0 548,793 - DZA65_RS02550 0.38 +0.1 548,793 - DZA65_RS02550 0.38 +0.5 548,793 - DZA65_RS02550 0.38 -0.2 548,793 - DZA65_RS02550 0.38 +0.1 548,793 - DZA65_RS02550 0.38 +0.2 548,793 - DZA65_RS02550 0.38 -0.6 548,793 - DZA65_RS02550 0.38 +0.5 548,793 - DZA65_RS02550 0.38 -0.6 548,796 + DZA65_RS02550 0.38 -0.9 549,072 + DZA65_RS02550 0.72 -0.5 549,072 + DZA65_RS02550 0.72 +0.2 549,073 - DZA65_RS02550 0.72 -0.1 549,073 - DZA65_RS02550 0.72 -0.7 549,073 - DZA65_RS02550 0.72 -0.3 549,073 - DZA65_RS02550 0.72 +0.0 549,075 + DZA65_RS02550 0.72 +2.3 549,075 + DZA65_RS02550 0.72 -0.2 549,075 + DZA65_RS02550 0.72 +0.1 549,075 + DZA65_RS02550 0.72 +0.8 549,075 + DZA65_RS02550 0.72 +0.2 549,075 + DZA65_RS02550 0.72 -1.6 549,075 + DZA65_RS02550 0.72 +0.6 549,076 - DZA65_RS02550 0.72 -0.4 549,076 - DZA65_RS02550 0.72 +0.7 549,076 - DZA65_RS02550 0.72 +0.3 549,076 - DZA65_RS02550 0.72 +0.7 549,185 + DZA65_RS02550 0.86 -1.8 549,211 + DZA65_RS02550 0.89 -0.3 549,283 + +0.6 549,284 - +0.5 549,297 + -0.1 549,297 + +0.1 549,297 + -0.3 549,297 + +0.1 549,297 + +1.6 549,297 + +3.6 549,298 - -2.1 549,298 - +1.2 549,298 - -0.5 549,298 - +1.6 549,298 - -0.5 549,298 - -0.6 549,298 - +1.0 549,310 + +0.2 549,310 + +0.5 549,310 + +0.2 549,310 + -0.8 549,310 + -0.3 549,310 + +0.3 549,310 + -0.2 549,310 + -1.3 549,310 + +0.4 549,310 + -1.3 549,310 + -0.0 549,310 + +0.5 549,310 + -0.7 549,310 + -0.9 549,310 + +0.7 549,311 - -1.1 549,311 - +0.1 549,311 - +0.5 549,311 - -1.5 549,311 - +1.2 549,311 - +0.1 549,311 - +1.0 549,311 - -0.3 549,311 - -0.8 549,311 - +0.2 549,311 - +0.0 549,311 - -0.1 549,311 - -0.9 549,311 - +1.4 549,314 + -0.0 549,314 + +1.3 549,315 - -0.7 549,621 + DZA65_RS02555 0.27 -0.3 549,621 + DZA65_RS02555 0.27 -2.3 549,621 + DZA65_RS02555 0.27 -0.0 549,622 - DZA65_RS02555 0.27 +0.8 549,622 - DZA65_RS02555 0.27 +0.2 549,681 + DZA65_RS02555 0.34 -0.1 549,682 - DZA65_RS02555 0.34 -0.7 549,682 - DZA65_RS02555 0.34 +0.5 549,682 - DZA65_RS02555 0.34 -0.7 549,682 - DZA65_RS02555 0.34 +0.4 549,682 - DZA65_RS02555 0.34 -0.4 549,682 - DZA65_RS02555 0.34 +0.3 549,682 - DZA65_RS02555 0.34 -0.3 549,682 - DZA65_RS02555 0.34 -0.1 549,729 + DZA65_RS02555 0.39 +0.0 549,729 + DZA65_RS02555 0.39 +0.7 549,729 + DZA65_RS02555 0.39 +0.9 549,730 - DZA65_RS02555 0.39 -1.3 549,730 - DZA65_RS02555 0.39 -1.4 549,745 + DZA65_RS02555 0.41 +1.8 549,746 - DZA65_RS02555 0.41 -0.7 549,764 + DZA65_RS02555 0.43 -0.0 549,764 + DZA65_RS02555 0.43 -0.8 549,764 + DZA65_RS02555 0.43 +0.3 549,764 + DZA65_RS02555 0.43 +0.3 549,765 - DZA65_RS02555 0.43 -1.1 549,765 - DZA65_RS02555 0.43 +0.5 549,765 - DZA65_RS02555 0.43 -0.5 549,765 - DZA65_RS02555 0.43 +1.0 549,805 + DZA65_RS02555 0.47 -1.4 549,805 + DZA65_RS02555 0.47 +0.0 549,805 + DZA65_RS02555 0.47 -0.5 549,805 + DZA65_RS02555 0.47 -0.4 549,805 + DZA65_RS02555 0.47 +0.7 549,806 - DZA65_RS02555 0.47 +2.4 549,806 - DZA65_RS02555 0.47 +0.4 549,806 - DZA65_RS02555 0.47 -1.5 549,806 - DZA65_RS02555 0.47 -2.2 549,806 - DZA65_RS02555 0.47 +0.0 549,806 - DZA65_RS02555 0.47 +0.1 549,806 - DZA65_RS02555 0.47 -0.7 549,806 - DZA65_RS02555 0.47 +0.5 549,806 - DZA65_RS02555 0.47 -0.7 549,811 - DZA65_RS02555 0.48 -1.4 549,937 + DZA65_RS02555 0.61 -0.2 549,937 + DZA65_RS02555 0.61 +0.5 549,937 + DZA65_RS02555 0.61 -1.3 549,937 + DZA65_RS02555 0.61 -2.1 549,937 + DZA65_RS02555 0.61 -0.8 549,938 - DZA65_RS02555 0.61 -0.6 549,938 - DZA65_RS02555 0.61 -1.2 549,938 - DZA65_RS02555 0.61 -0.1 549,938 - DZA65_RS02555 0.61 -1.8 549,938 - DZA65_RS02555 0.61 -0.4 549,945 + DZA65_RS02555 0.62 -1.8 549,945 + DZA65_RS02555 0.62 +0.6 549,946 - DZA65_RS02555 0.62 -1.8 549,946 - DZA65_RS02555 0.62 -1.5 549,962 + DZA65_RS02555 0.64 +0.3 549,963 - DZA65_RS02555 0.64 +0.5 549,963 - DZA65_RS02555 0.64 +0.6 549,963 - DZA65_RS02555 0.64 -0.3 549,972 - DZA65_RS02555 0.65 -0.1 549,985 - DZA65_RS02555 0.66 -1.4 550,207 - DZA65_RS02555 0.90 -0.3 550,207 - DZA65_RS02555 0.90 +0.1 550,207 - DZA65_RS02555 0.90 -0.9 550,221 + +0.5 550,222 - -0.0 550,284 + -0.4 550,284 + -1.0 550,319 + -0.4 550,319 + +0.5 550,319 + -0.3 550,320 - +0.7 550,320 - +2.0 550,320 - +0.5 550,320 - -0.5 550,320 - +0.5 550,341 + -0.8 550,353 + -0.4 550,396 + -0.5 550,397 - +0.6 550,460 + DZA65_RS02560 0.16 +0.5 550,774 + DZA65_RS02560 0.47 +0.1 550,775 - DZA65_RS02560 0.47 +0.5 550,775 - DZA65_RS02560 0.47 +1.2 550,805 + DZA65_RS02560 0.50 -1.0 550,805 + DZA65_RS02560 0.50 +1.0 550,805 + DZA65_RS02560 0.50 +1.0 550,805 + DZA65_RS02560 0.50 +0.3 550,805 + DZA65_RS02560 0.50 -0.6 550,805 + DZA65_RS02560 0.50 +0.1 550,806 - DZA65_RS02560 0.51 -1.1 550,806 - DZA65_RS02560 0.51 +1.0 551,298 - -0.3 551,302 - -0.3
Or see this region's nucleotide sequence