Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02460 and DZA65_RS02465 are separated by 234 nucleotides DZA65_RS02465 and DZA65_RS02475 are separated by 338 nucleotides DZA65_RS02475 and DZA65_RS02480 are separated by 13 nucleotides
DZA65_RS02460: DZA65_RS02460 - YecA family protein, at 530,854 to 531,438
_RS02460
DZA65_RS02465: DZA65_RS02465 - cell division protein ZapA, at 531,673 to 532,002
_RS02465
DZA65_RS02475: DZA65_RS02475 - 5-formyltetrahydrofolate cyclo-ligase, at 532,341 to 532,955
_RS02475
DZA65_RS02480: DZA65_RS02480 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 532,969 to 534,225
_RS02480
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 531.392 kb on - strand at 531.392 kb on - strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.424 kb on - strand at 531.424 kb on - strand at 531.430 kb on + strand at 531.431 kb on - strand at 531.431 kb on - strand at 531.432 kb on + strand at 531.432 kb on + strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.473 kb on - strand at 531.473 kb on - strand at 531.473 kb on - strand at 531.478 kb on - strand at 531.478 kb on - strand at 531.496 kb on + strand at 531.497 kb on - strand at 531.499 kb on - strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.543 kb on + strand at 531.543 kb on + strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.546 kb on + strand at 531.546 kb on + strand at 531.546 kb on + strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.568 kb on + strand at 531.568 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.580 kb on - strand at 531.580 kb on - strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.774 kb on + strand, within DZA65_RS02465 at 531.969 kb on + strand, within DZA65_RS02465 at 531.969 kb on + strand, within DZA65_RS02465 at 531.969 kb on + strand, within DZA65_RS02465 at 531.970 kb on - strand at 531.970 kb on - strand at 531.973 kb on - strand at 532.001 kb on - strand at 532.001 kb on - strand at 532.024 kb on + strand at 532.025 kb on - strand at 532.025 kb on - strand at 532.062 kb on + strand at 532.062 kb on + strand at 532.062 kb on + strand at 532.062 kb on + strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.128 kb on + strand at 532.129 kb on - strand at 532.148 kb on - strand at 532.157 kb on + strand at 532.158 kb on - strand at 532.194 kb on - strand at 532.239 kb on - strand at 532.239 kb on - strand at 532.277 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.310 kb on + strand at 532.311 kb on - strand at 532.311 kb on - strand at 532.311 kb on - strand at 532.319 kb on - strand at 532.387 kb on + strand at 532.388 kb on - strand at 532.596 kb on + strand, within DZA65_RS02475 at 532.596 kb on + strand, within DZA65_RS02475 at 532.596 kb on + strand, within DZA65_RS02475 at 532.642 kb on + strand, within DZA65_RS02475 at 532.642 kb on + strand, within DZA65_RS02475 at 532.642 kb on + strand, within DZA65_RS02475 at 532.643 kb on - strand, within DZA65_RS02475 at 532.807 kb on - strand, within DZA65_RS02475 at 532.807 kb on - strand, within DZA65_RS02475 at 532.958 kb on + strand at 532.958 kb on + strand at 532.971 kb on - strand at 533.054 kb on + strand at 533.054 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.083 kb on + strand at 533.083 kb on + strand at 533.084 kb on - strand at 533.084 kb on - strand at 533.084 kb on - strand at 533.103 kb on + strand, within DZA65_RS02480 at 533.103 kb on + strand, within DZA65_RS02480 at 533.103 kb on + strand, within DZA65_RS02480 at 533.103 kb on + strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.262 kb on - strand, within DZA65_RS02480 at 533.426 kb on + strand at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.467 kb on - strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.574 kb on - strand, within DZA65_RS02480 at 533.616 kb on + strand at 533.616 kb on + strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.669 kb on + strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.699 kb on + strand, within DZA65_RS02480 at 533.700 kb on - strand, within DZA65_RS02480 at 533.829 kb on - strand, within DZA65_RS02480 at 533.905 kb on + strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.953 kb on + strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 531,392 - -0.5 531,392 - +0.2 531,423 + -0.3 531,423 + -0.0 531,423 + -2.5 531,423 + -1.5 531,423 + -1.1 531,424 - -0.9 531,424 - -1.1 531,430 + +1.1 531,431 - -1.2 531,431 - +0.1 531,432 + -1.0 531,432 + -0.8 531,433 - -0.5 531,433 - -1.5 531,433 - -0.6 531,433 - +1.1 531,473 - +0.2 531,473 - -1.5 531,473 - -0.4 531,478 - -0.9 531,478 - -0.4 531,496 + -0.3 531,497 - -1.5 531,499 - -0.0 531,536 + +0.9 531,536 + -0.6 531,536 + -0.5 531,536 + +0.1 531,536 + +0.5 531,536 + +0.5 531,536 + +0.5 531,536 + +0.1 531,536 + +0.9 531,536 + -0.6 531,537 - +1.2 531,537 - +2.2 531,537 - +0.3 531,537 - -1.1 531,537 - +0.0 531,537 - -0.9 531,537 - +0.8 531,537 - +0.2 531,543 + -0.5 531,543 + +1.5 531,544 - +1.0 531,544 - +0.5 531,544 - +0.1 531,544 - -0.7 531,544 - +2.8 531,546 + +0.0 531,546 + +1.3 531,546 + +0.3 531,547 - +0.6 531,547 - +0.5 531,547 - +1.4 531,547 - +0.9 531,552 + +1.8 531,552 + +0.1 531,552 + -0.3 531,552 + -1.1 531,553 - -1.3 531,553 - +0.5 531,553 - -0.4 531,553 - +0.6 531,554 + +0.5 531,554 + +2.1 531,554 + -0.0 531,554 + +0.7 531,554 + +0.5 531,554 + -1.1 531,554 + -0.2 531,554 + -2.5 531,554 + -0.8 531,554 + -0.8 531,554 + -0.7 531,554 + -0.5 531,554 + -0.2 531,554 + -1.6 531,554 + -0.5 531,555 - +0.5 531,555 - -0.6 531,555 - -0.5 531,555 - -0.4 531,555 - -0.5 531,555 - +0.5 531,555 - -0.3 531,555 - -0.5 531,555 - -0.3 531,555 - -0.2 531,555 - -1.6 531,555 - -0.5 531,555 - +0.7 531,555 - -0.1 531,568 + -1.7 531,568 + +1.3 531,579 + -1.1 531,579 + -1.7 531,579 + -1.1 531,579 + -1.7 531,580 - -2.3 531,580 - +1.1 531,581 + -0.3 531,581 + -0.5 531,581 + -0.0 531,581 + -0.7 531,581 + +0.9 531,581 + -2.5 531,581 + +1.1 531,581 + -3.2 531,581 + -2.3 531,581 + -2.1 531,581 + -2.3 531,583 + -0.7 531,583 + -2.8 531,583 + -0.8 531,583 + -2.3 531,774 + DZA65_RS02465 0.31 +0.5 531,969 + DZA65_RS02465 0.90 -1.3 531,969 + DZA65_RS02465 0.90 -0.6 531,969 + DZA65_RS02465 0.90 -0.6 531,970 - -2.8 531,970 - -0.2 531,973 - -1.5 532,001 - -0.2 532,001 - +1.3 532,024 + -1.3 532,025 - -0.5 532,025 - +0.7 532,062 + +0.8 532,062 + -0.3 532,062 + -0.2 532,062 + +0.5 532,063 - -0.9 532,063 - -0.0 532,063 - +0.1 532,063 - +0.8 532,063 - -2.4 532,063 - -0.8 532,063 - -0.5 532,063 - +0.1 532,128 + +0.4 532,129 - +0.3 532,148 - +1.1 532,157 + -0.8 532,158 - +1.3 532,194 - +1.6 532,239 - +0.5 532,239 - +1.1 532,277 + +0.3 532,297 + +0.0 532,297 + +0.4 532,297 + -1.0 532,297 + +0.2 532,297 + -1.3 532,310 + -0.4 532,311 - -0.5 532,311 - -2.0 532,311 - -0.1 532,319 - +0.2 532,387 + +0.5 532,388 - -0.6 532,596 + DZA65_RS02475 0.41 -0.7 532,596 + DZA65_RS02475 0.41 +0.1 532,596 + DZA65_RS02475 0.41 -0.5 532,642 + DZA65_RS02475 0.49 +2.6 532,642 + DZA65_RS02475 0.49 +0.1 532,642 + DZA65_RS02475 0.49 +0.3 532,643 - DZA65_RS02475 0.49 +0.0 532,807 - DZA65_RS02475 0.76 -0.3 532,807 - DZA65_RS02475 0.76 +0.2 532,958 + +1.9 532,958 + -3.1 532,971 - -0.1 533,054 + -0.0 533,054 + +0.3 533,078 + -2.1 533,078 + -0.5 533,078 + +0.0 533,078 + +0.3 533,078 + -0.8 533,079 - -0.8 533,079 - -0.6 533,079 - +0.7 533,079 - -0.4 533,079 - -1.5 533,083 + +0.5 533,083 + -1.5 533,084 - -0.2 533,084 - -0.1 533,084 - -0.5 533,103 + DZA65_RS02480 0.11 -1.2 533,103 + DZA65_RS02480 0.11 -0.5 533,103 + DZA65_RS02480 0.11 +0.1 533,103 + DZA65_RS02480 0.11 +0.8 533,104 - DZA65_RS02480 0.11 +1.6 533,104 - DZA65_RS02480 0.11 -0.5 533,104 - DZA65_RS02480 0.11 +0.8 533,104 - DZA65_RS02480 0.11 -1.1 533,104 - DZA65_RS02480 0.11 -0.6 533,104 - DZA65_RS02480 0.11 +1.3 533,109 + DZA65_RS02480 0.11 +1.2 533,109 + DZA65_RS02480 0.11 +0.3 533,109 + DZA65_RS02480 0.11 +0.5 533,109 + DZA65_RS02480 0.11 +0.7 533,109 + DZA65_RS02480 0.11 -0.1 533,110 - DZA65_RS02480 0.11 -0.1 533,110 - DZA65_RS02480 0.11 -0.1 533,110 - DZA65_RS02480 0.11 +0.8 533,110 - DZA65_RS02480 0.11 -0.2 533,110 - DZA65_RS02480 0.11 +2.8 533,110 - DZA65_RS02480 0.11 -0.3 533,110 - DZA65_RS02480 0.11 -1.7 533,262 - DZA65_RS02480 0.23 +0.5 533,426 + +0.9 533,426 + DZA65_RS02480 0.36 -1.1 533,426 + DZA65_RS02480 0.36 -1.2 533,426 + DZA65_RS02480 0.36 -0.7 533,426 + DZA65_RS02480 0.36 -2.3 533,426 + DZA65_RS02480 0.36 +0.5 533,427 - DZA65_RS02480 0.36 -0.7 533,427 - DZA65_RS02480 0.36 -0.1 533,427 - DZA65_RS02480 0.36 +0.5 533,427 - DZA65_RS02480 0.36 -0.2 533,439 - DZA65_RS02480 0.37 -2.1 533,439 - DZA65_RS02480 0.37 +0.1 533,467 - DZA65_RS02480 0.40 +1.1 533,562 + DZA65_RS02480 0.47 -0.4 533,562 + DZA65_RS02480 0.47 +0.1 533,562 + DZA65_RS02480 0.47 -1.3 533,562 + DZA65_RS02480 0.47 -0.5 533,562 + DZA65_RS02480 0.47 -0.1 533,562 + DZA65_RS02480 0.47 -0.4 533,562 + DZA65_RS02480 0.47 +1.2 533,562 + DZA65_RS02480 0.47 -0.2 533,562 + DZA65_RS02480 0.47 -0.7 533,563 - DZA65_RS02480 0.47 +0.1 533,563 - +0.5 533,563 - DZA65_RS02480 0.47 +0.5 533,563 - DZA65_RS02480 0.47 -0.3 533,563 - DZA65_RS02480 0.47 +0.7 533,563 - DZA65_RS02480 0.47 +0.5 533,563 - DZA65_RS02480 0.47 +1.4 533,563 - DZA65_RS02480 0.47 +0.4 533,563 - DZA65_RS02480 0.47 +0.9 533,563 - DZA65_RS02480 0.47 -2.1 533,564 + DZA65_RS02480 0.47 -0.1 533,564 + DZA65_RS02480 0.47 -1.4 533,564 + DZA65_RS02480 0.47 +0.1 533,564 + DZA65_RS02480 0.47 -1.5 533,564 + DZA65_RS02480 0.47 +0.7 533,564 + DZA65_RS02480 0.47 +0.5 533,565 - DZA65_RS02480 0.47 +0.5 533,565 - DZA65_RS02480 0.47 +0.4 533,565 - DZA65_RS02480 0.47 +0.1 533,565 - DZA65_RS02480 0.47 -1.1 533,565 - DZA65_RS02480 0.47 -0.9 533,565 - DZA65_RS02480 0.47 +0.2 533,565 - DZA65_RS02480 0.47 -0.8 533,565 - DZA65_RS02480 0.47 +0.3 533,574 - DZA65_RS02480 0.48 -0.5 533,616 + -0.1 533,616 + DZA65_RS02480 0.51 -0.5 533,617 - DZA65_RS02480 0.52 +0.6 533,617 - DZA65_RS02480 0.52 -0.5 533,617 - DZA65_RS02480 0.52 +0.6 533,669 + DZA65_RS02480 0.56 +1.4 533,670 - DZA65_RS02480 0.56 +0.6 533,670 - DZA65_RS02480 0.56 -0.3 533,670 - DZA65_RS02480 0.56 +0.5 533,670 - DZA65_RS02480 0.56 +1.1 533,699 + DZA65_RS02480 0.58 +1.1 533,700 - DZA65_RS02480 0.58 -0.1 533,829 - DZA65_RS02480 0.68 +0.0 533,905 + DZA65_RS02480 0.74 +0.3 533,906 - DZA65_RS02480 0.75 -0.3 533,906 - DZA65_RS02480 0.75 +0.5 533,953 + DZA65_RS02480 0.78 +0.7 533,954 - DZA65_RS02480 0.78 -1.8 533,954 - DZA65_RS02480 0.78 -1.7
Or see this region's nucleotide sequence