Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02395 and DZA65_RS02400 are separated by 26 nucleotides DZA65_RS02400 and DZA65_RS02405 are separated by 18 nucleotides DZA65_RS02405 and DZA65_RS02410 are separated by 26 nucleotides DZA65_RS02410 and DZA65_RS02415 are separated by 207 nucleotides
DZA65_RS02395: DZA65_RS02395 - HTH-type transcriptional activator RhaS, at 517,851 to 518,681
_RS02395
DZA65_RS02400: DZA65_RS02400 - HTH-type transcriptional activator RhaR, at 518,708 to 519,562
_RS02400
DZA65_RS02405: DZA65_RS02405 - hypothetical protein, at 519,581 to 519,865
_RS02405
DZA65_RS02410: DZA65_RS02410 - hypothetical protein, at 519,892 to 520,155
_RS02410
DZA65_RS02415: DZA65_RS02415 - ABC transporter ATP-binding protein, at 520,363 to 522,063
_RS02415
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 517.746 kb on - strand at 517.746 kb on - strand at 517.776 kb on + strand at 517.777 kb on - strand at 517.777 kb on - strand at 517.779 kb on + strand at 517.779 kb on + strand at 517.789 kb on + strand at 517.789 kb on + strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.796 kb on - strand at 517.806 kb on + strand at 517.806 kb on + strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.824 kb on + strand at 517.824 kb on + strand at 517.824 kb on + strand at 517.825 kb on - strand at 517.944 kb on + strand, within DZA65_RS02395 at 517.945 kb on - strand, within DZA65_RS02395 at 518.314 kb on + strand, within DZA65_RS02395 at 518.315 kb on - strand at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand at 518.460 kb on - strand, within DZA65_RS02395 at 518.679 kb on + strand at 518.679 kb on + strand at 518.679 kb on + strand at 518.679 kb on + strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.685 kb on + strand at 518.686 kb on - strand at 518.730 kb on + strand at 518.730 kb on + strand at 518.730 kb on + strand at 518.731 kb on - strand at 518.744 kb on + strand at 518.744 kb on + strand at 518.744 kb on + strand at 518.745 kb on - strand at 518.745 kb on - strand at 518.764 kb on + strand at 518.764 kb on + strand at 518.764 kb on + strand at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.937 kb on - strand, within DZA65_RS02400 at 518.968 kb on + strand, within DZA65_RS02400 at 518.968 kb on + strand, within DZA65_RS02400 at 518.969 kb on - strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.977 kb on + strand, within DZA65_RS02400 at 519.201 kb on - strand, within DZA65_RS02400 at 519.337 kb on + strand, within DZA65_RS02400 at 519.377 kb on + strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.479 kb on + strand at 519.582 kb on + strand at 519.582 kb on + strand at 519.583 kb on - strand at 519.621 kb on + strand, within DZA65_RS02405 at 519.622 kb on - strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.644 kb on - strand, within DZA65_RS02405 at 519.647 kb on + strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405 at 519.756 kb on - strand, within DZA65_RS02405 at 519.756 kb on - strand, within DZA65_RS02405 at 519.783 kb on + strand, within DZA65_RS02405 at 519.800 kb on + strand, within DZA65_RS02405 at 519.957 kb on + strand, within DZA65_RS02410 at 519.957 kb on + strand, within DZA65_RS02410 at 519.958 kb on - strand, within DZA65_RS02410 at 519.964 kb on - strand, within DZA65_RS02410 at 519.967 kb on - strand, within DZA65_RS02410 at 519.967 kb on - strand, within DZA65_RS02410 at 519.977 kb on - strand, within DZA65_RS02410 at 519.977 kb on - strand, within DZA65_RS02410 at 519.990 kb on - strand, within DZA65_RS02410 at 520.023 kb on + strand, within DZA65_RS02410 at 520.023 kb on + strand, within DZA65_RS02410 at 520.024 kb on - strand, within DZA65_RS02410 at 520.024 kb on - strand, within DZA65_RS02410 at 520.024 kb on - strand, within DZA65_RS02410 at 520.083 kb on + strand, within DZA65_RS02410 at 520.083 kb on + strand, within DZA65_RS02410 at 520.084 kb on - strand, within DZA65_RS02410 at 520.085 kb on + strand, within DZA65_RS02410 at 520.086 kb on - strand, within DZA65_RS02410 at 520.103 kb on + strand, within DZA65_RS02410 at 520.123 kb on + strand, within DZA65_RS02410 at 520.124 kb on - strand, within DZA65_RS02410 at 520.138 kb on - strand at 520.171 kb on + strand at 520.172 kb on - strand at 520.203 kb on + strand at 520.204 kb on - strand at 520.204 kb on - strand at 520.208 kb on + strand at 520.218 kb on - strand at 520.289 kb on - strand at 520.309 kb on - strand at 520.321 kb on + strand at 520.358 kb on + strand at 520.371 kb on - strand at 520.375 kb on - strand at 520.392 kb on + strand at 520.396 kb on + strand at 520.396 kb on + strand at 520.396 kb on + strand at 520.421 kb on - strand at 520.434 kb on - strand at 520.456 kb on + strand at 520.457 kb on - strand at 520.532 kb on - strand at 520.551 kb on + strand, within DZA65_RS02415 at 520.551 kb on + strand, within DZA65_RS02415 at 520.551 kb on + strand, within DZA65_RS02415 at 520.551 kb on + strand, within DZA65_RS02415 at 520.552 kb on - strand, within DZA65_RS02415 at 520.552 kb on - strand, within DZA65_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 517,746 - -0.4 517,746 - -2.6 517,776 + -0.6 517,777 - +0.1 517,777 - +1.3 517,779 + -0.2 517,779 + -0.3 517,789 + +0.8 517,789 + -0.0 517,790 - +1.1 517,790 - -0.1 517,790 - -0.5 517,790 - -1.4 517,790 - -0.8 517,796 - +1.9 517,806 + -1.9 517,806 + -1.7 517,807 - -1.7 517,807 - -0.3 517,807 - +0.1 517,807 - +0.4 517,807 - -0.1 517,812 + +0.2 517,812 + +0.5 517,812 + +0.3 517,812 + +0.5 517,812 + -0.5 517,813 - +1.7 517,813 - +0.6 517,813 - +1.8 517,813 - +0.2 517,813 - +0.6 517,824 + -0.3 517,824 + +0.2 517,824 + +0.7 517,825 - -0.6 517,944 + DZA65_RS02395 0.11 -0.1 517,945 - DZA65_RS02395 0.11 +0.5 518,314 + DZA65_RS02395 0.56 -0.5 518,315 - +1.2 518,399 + DZA65_RS02395 0.66 -0.4 518,399 + DZA65_RS02395 0.66 +0.6 518,399 + DZA65_RS02395 0.66 +0.0 518,399 + DZA65_RS02395 0.66 +0.3 518,399 + DZA65_RS02395 0.66 -1.1 518,399 + DZA65_RS02395 0.66 +0.5 518,399 + DZA65_RS02395 0.66 -0.1 518,400 - DZA65_RS02395 0.66 +1.5 518,400 - DZA65_RS02395 0.66 -0.0 518,400 - DZA65_RS02395 0.66 +1.0 518,459 + DZA65_RS02395 0.73 -0.0 518,459 + DZA65_RS02395 0.73 -1.5 518,459 + DZA65_RS02395 0.73 -0.3 518,459 + DZA65_RS02395 0.73 -0.0 518,460 - DZA65_RS02395 0.73 -1.1 518,460 - DZA65_RS02395 0.73 +0.2 518,460 - DZA65_RS02395 0.73 -0.5 518,460 - DZA65_RS02395 0.73 +1.3 518,460 - +0.5 518,460 - DZA65_RS02395 0.73 -0.6 518,679 + +0.0 518,679 + +1.0 518,679 + -1.8 518,679 + +0.9 518,680 - +0.6 518,680 - +1.5 518,680 - -1.0 518,680 - +0.5 518,680 - -0.6 518,685 + -0.8 518,686 - +0.6 518,730 + -1.6 518,730 + +0.2 518,730 + -0.4 518,731 - -1.1 518,744 + +1.7 518,744 + -1.7 518,744 + +0.2 518,745 - -0.8 518,745 - +0.5 518,764 + +0.6 518,764 + +0.8 518,764 + +0.7 518,890 + DZA65_RS02400 0.21 -0.3 518,890 + DZA65_RS02400 0.21 -1.8 518,890 + DZA65_RS02400 0.21 +0.9 518,890 + DZA65_RS02400 0.21 +0.3 518,909 + DZA65_RS02400 0.24 -1.1 518,909 + DZA65_RS02400 0.24 +1.1 518,909 + DZA65_RS02400 0.24 -0.8 518,909 + DZA65_RS02400 0.24 +0.3 518,910 - DZA65_RS02400 0.24 +0.6 518,910 - DZA65_RS02400 0.24 +0.5 518,910 - DZA65_RS02400 0.24 -0.8 518,910 - DZA65_RS02400 0.24 -0.9 518,910 - DZA65_RS02400 0.24 -0.2 518,910 - DZA65_RS02400 0.24 +0.5 518,936 + DZA65_RS02400 0.27 +0.1 518,936 + DZA65_RS02400 0.27 -2.1 518,936 + DZA65_RS02400 0.27 +0.1 518,937 - DZA65_RS02400 0.27 -0.6 518,968 + DZA65_RS02400 0.30 -2.5 518,968 + DZA65_RS02400 0.30 -0.1 518,969 - DZA65_RS02400 0.31 +0.8 518,975 + DZA65_RS02400 0.31 -0.9 518,975 + DZA65_RS02400 0.31 -0.3 518,975 + DZA65_RS02400 0.31 -0.3 518,975 + DZA65_RS02400 0.31 +0.1 518,975 + DZA65_RS02400 0.31 -1.4 518,975 + DZA65_RS02400 0.31 +0.6 518,975 + DZA65_RS02400 0.31 -0.3 518,976 - DZA65_RS02400 0.31 -2.0 518,976 - DZA65_RS02400 0.31 -0.8 518,976 - DZA65_RS02400 0.31 -0.6 518,976 - DZA65_RS02400 0.31 +0.5 518,976 - DZA65_RS02400 0.31 +1.9 518,976 - DZA65_RS02400 0.31 -0.3 518,977 + DZA65_RS02400 0.31 -1.3 519,201 - DZA65_RS02400 0.58 -1.1 519,337 + DZA65_RS02400 0.74 -0.8 519,377 + DZA65_RS02400 0.78 -1.0 519,423 - DZA65_RS02400 0.84 +1.0 519,423 - DZA65_RS02400 0.84 -0.9 519,479 + -0.1 519,582 + +0.0 519,582 + +0.1 519,583 - +0.8 519,621 + DZA65_RS02405 0.14 -0.6 519,622 - DZA65_RS02405 0.14 +0.5 519,643 + DZA65_RS02405 0.22 +0.0 519,643 + DZA65_RS02405 0.22 +0.3 519,644 - DZA65_RS02405 0.22 -0.0 519,647 + DZA65_RS02405 0.23 -1.8 519,648 - DZA65_RS02405 0.24 -1.8 519,648 - DZA65_RS02405 0.24 +1.0 519,756 - DZA65_RS02405 0.61 +0.6 519,756 - DZA65_RS02405 0.61 -0.8 519,783 + DZA65_RS02405 0.71 -0.4 519,800 + DZA65_RS02405 0.77 +0.3 519,957 + DZA65_RS02410 0.25 +0.7 519,957 + DZA65_RS02410 0.25 +0.1 519,958 - DZA65_RS02410 0.25 +0.8 519,964 - DZA65_RS02410 0.27 -2.8 519,967 - DZA65_RS02410 0.28 -0.9 519,967 - DZA65_RS02410 0.28 -0.1 519,977 - DZA65_RS02410 0.32 +3.3 519,977 - DZA65_RS02410 0.32 +1.3 519,990 - DZA65_RS02410 0.37 +0.5 520,023 + DZA65_RS02410 0.50 -0.6 520,023 + DZA65_RS02410 0.50 +1.8 520,024 - DZA65_RS02410 0.50 +1.0 520,024 - DZA65_RS02410 0.50 +0.7 520,024 - DZA65_RS02410 0.50 -1.1 520,083 + DZA65_RS02410 0.72 +0.3 520,083 + DZA65_RS02410 0.72 -0.8 520,084 - DZA65_RS02410 0.73 -1.3 520,085 + DZA65_RS02410 0.73 +0.6 520,086 - DZA65_RS02410 0.73 -1.0 520,103 + DZA65_RS02410 0.80 -0.1 520,123 + DZA65_RS02410 0.88 -1.8 520,124 - DZA65_RS02410 0.88 +0.1 520,138 - -0.1 520,171 + +1.2 520,172 - -0.2 520,203 + -0.3 520,204 - +0.7 520,204 - -0.1 520,208 + +0.1 520,218 - -0.7 520,289 - +0.3 520,309 - -0.0 520,321 + -0.9 520,358 + -0.5 520,371 - -1.3 520,375 - -0.2 520,392 + -1.5 520,396 + +1.5 520,396 + +0.1 520,396 + -0.5 520,421 - -0.7 520,434 - -0.9 520,456 + -0.2 520,457 - +0.2 520,532 - +0.9 520,551 + DZA65_RS02415 0.11 +0.2 520,551 + DZA65_RS02415 0.11 +0.8 520,551 + DZA65_RS02415 0.11 -0.1 520,551 + DZA65_RS02415 0.11 -0.1 520,552 - DZA65_RS02415 0.11 +1.1 520,552 - DZA65_RS02415 0.11 -0.2
Or see this region's nucleotide sequence