Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02290 and DZA65_RS02295 are separated by 81 nucleotides DZA65_RS02295 and DZA65_RS02300 are separated by 66 nucleotides DZA65_RS02300 and DZA65_RS02305 are separated by 34 nucleotides DZA65_RS02305 and DZA65_RS02310 are separated by 75 nucleotides
DZA65_RS02290: DZA65_RS02290 - SDR family oxidoreductase, at 496,322 to 496,396
_RS02290
DZA65_RS02295: DZA65_RS02295 - cytolytic delta-endotoxin, at 496,478 to 497,140
_RS02295
DZA65_RS02300: DZA65_RS02300 - type-1Ba cytolytic delta-endotoxin, at 497,207 to 497,818
_RS02300
DZA65_RS02305: DZA65_RS02305 - type-2Aa cytolytic delta-endotoxin, at 497,853 to 498,452
_RS02305
DZA65_RS02310: DZA65_RS02310 - delta-endotoxin CytB, at 498,528 to 499,163
_RS02310
Position (kb) 497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 496.234 kb on + strand at 496.297 kb on - strand at 496.346 kb on + strand, within DZA65_RS02290 at 496.346 kb on + strand, within DZA65_RS02290 at 496.346 kb on + strand, within DZA65_RS02290 at 496.346 kb on + strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.408 kb on + strand at 496.408 kb on + strand at 496.408 kb on + strand at 496.408 kb on + strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.412 kb on - strand at 496.417 kb on + strand at 496.417 kb on + strand at 496.417 kb on + strand at 496.417 kb on + strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.476 kb on + strand at 496.476 kb on + strand at 496.477 kb on - strand at 496.487 kb on + strand at 496.505 kb on + strand at 496.520 kb on + strand at 496.527 kb on + strand at 496.528 kb on - strand at 496.528 kb on - strand at 496.553 kb on - strand, within DZA65_RS02295 at 496.553 kb on - strand, within DZA65_RS02295 at 496.640 kb on + strand, within DZA65_RS02295 at 496.640 kb on + strand, within DZA65_RS02295 at 496.640 kb on + strand, within DZA65_RS02295 at 496.641 kb on - strand, within DZA65_RS02295 at 496.641 kb on - strand, within DZA65_RS02295 at 496.650 kb on + strand, within DZA65_RS02295 at 496.650 kb on + strand, within DZA65_RS02295 at 496.651 kb on - strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.669 kb on + strand, within DZA65_RS02295 at 496.725 kb on - strand, within DZA65_RS02295 at 496.757 kb on - strand, within DZA65_RS02295 at 496.812 kb on - strand, within DZA65_RS02295 at 496.877 kb on + strand, within DZA65_RS02295 at 496.878 kb on - strand, within DZA65_RS02295 at 496.916 kb on - strand, within DZA65_RS02295 at 496.930 kb on + strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.982 kb on - strand, within DZA65_RS02295 at 496.982 kb on - strand, within DZA65_RS02295 at 496.983 kb on + strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 497.042 kb on + strand, within DZA65_RS02295 at 497.049 kb on + strand, within DZA65_RS02295 at 497.077 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.108 kb on - strand at 497.108 kb on - strand at 497.131 kb on + strand at 497.131 kb on + strand at 497.132 kb on - strand at 497.140 kb on + strand at 497.140 kb on + strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.159 kb on + strand at 497.160 kb on - strand at 497.191 kb on - strand at 497.195 kb on + strand at 497.297 kb on + strand, within DZA65_RS02300 at 497.391 kb on - strand, within DZA65_RS02300 at 497.397 kb on + strand, within DZA65_RS02300 at 497.443 kb on + strand, within DZA65_RS02300 at 497.511 kb on + strand, within DZA65_RS02300 at 497.612 kb on - strand, within DZA65_RS02300 at 497.756 kb on + strand, within DZA65_RS02300 at 497.810 kb on + strand at 497.831 kb on + strand at 497.831 kb on + strand at 497.832 kb on - strand at 497.832 kb on - strand at 497.833 kb on + strand at 497.834 kb on - strand at 497.849 kb on - strand at 497.855 kb on - strand at 497.885 kb on + strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.957 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.043 kb on + strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.082 kb on + strand, within DZA65_RS02305 at 498.083 kb on - strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand at 498.169 kb on - strand, within DZA65_RS02305 at 498.224 kb on + strand at 498.224 kb on + strand, within DZA65_RS02305 at 498.237 kb on + strand, within DZA65_RS02305 at 498.238 kb on - strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.266 kb on + strand, within DZA65_RS02305 at 498.289 kb on - strand, within DZA65_RS02305 at 498.324 kb on - strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.345 kb on - strand, within DZA65_RS02305 at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.444 kb on - strand at 498.444 kb on - strand at 498.464 kb on - strand at 498.486 kb on + strand at 498.577 kb on + strand at 498.578 kb on - strand at 498.578 kb on - strand at 498.587 kb on + strand at 498.635 kb on + strand, within DZA65_RS02310 at 498.650 kb on + strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.713 kb on + strand, within DZA65_RS02310 at 498.714 kb on - strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 496,234 + +0.5 496,297 - +0.2 496,346 + DZA65_RS02290 0.32 +0.8 496,346 + DZA65_RS02290 0.32 -1.2 496,346 + DZA65_RS02290 0.32 +0.8 496,346 + DZA65_RS02290 0.32 +0.4 496,347 - DZA65_RS02290 0.33 -0.6 496,347 - DZA65_RS02290 0.33 +0.7 496,347 - DZA65_RS02290 0.33 -1.1 496,347 - DZA65_RS02290 0.33 -0.7 496,408 + +1.0 496,408 + -0.1 496,408 + +0.5 496,408 + +0.2 496,409 - +0.8 496,409 - +0.7 496,409 - -0.3 496,409 - -1.0 496,409 - +0.7 496,411 + +0.5 496,411 + -0.1 496,412 - +1.7 496,417 + -0.6 496,417 + +2.1 496,417 + +1.7 496,417 + -0.1 496,418 - -0.7 496,418 - +0.7 496,418 - -0.3 496,418 - +1.7 496,418 - -0.2 496,418 - +0.1 496,418 - +0.8 496,418 - +1.1 496,418 - -0.1 496,476 + -0.6 496,476 + -0.8 496,477 - +0.3 496,487 + -0.5 496,505 + +0.2 496,520 + -0.7 496,527 + -1.1 496,528 - +1.0 496,528 - +0.1 496,553 - DZA65_RS02295 0.11 +0.9 496,553 - DZA65_RS02295 0.11 +1.7 496,640 + DZA65_RS02295 0.24 -0.9 496,640 + DZA65_RS02295 0.24 +0.5 496,640 + DZA65_RS02295 0.24 +0.6 496,641 - DZA65_RS02295 0.25 +0.7 496,641 - DZA65_RS02295 0.25 -1.2 496,650 + DZA65_RS02295 0.26 +1.2 496,650 + DZA65_RS02295 0.26 -1.1 496,651 - DZA65_RS02295 0.26 -0.0 496,654 + DZA65_RS02295 0.27 +0.6 496,654 + DZA65_RS02295 0.27 -0.7 496,654 + DZA65_RS02295 0.27 -0.7 496,654 + DZA65_RS02295 0.27 -1.1 496,655 - DZA65_RS02295 0.27 -0.3 496,655 - DZA65_RS02295 0.27 -1.2 496,655 - DZA65_RS02295 0.27 +0.2 496,655 - DZA65_RS02295 0.27 -1.2 496,655 - +0.5 496,656 + DZA65_RS02295 0.27 +0.2 496,656 + DZA65_RS02295 0.27 -0.0 496,656 + DZA65_RS02295 0.27 -0.5 496,656 + DZA65_RS02295 0.27 -0.5 496,656 + DZA65_RS02295 0.27 +1.5 496,656 + DZA65_RS02295 0.27 -0.5 496,656 + DZA65_RS02295 0.27 -0.6 496,656 + DZA65_RS02295 0.27 +0.2 496,656 + DZA65_RS02295 0.27 -0.8 496,656 + DZA65_RS02295 0.27 -0.7 496,656 + DZA65_RS02295 0.27 +0.6 496,657 - DZA65_RS02295 0.27 +0.3 496,657 - DZA65_RS02295 0.27 -3.0 496,657 - DZA65_RS02295 0.27 +0.8 496,657 - DZA65_RS02295 0.27 +0.8 496,657 - DZA65_RS02295 0.27 +0.4 496,657 - DZA65_RS02295 0.27 +1.1 496,669 + DZA65_RS02295 0.29 -1.5 496,725 - DZA65_RS02295 0.37 -1.8 496,757 - DZA65_RS02295 0.42 -0.8 496,812 - DZA65_RS02295 0.50 -0.1 496,877 + DZA65_RS02295 0.60 +1.1 496,878 - DZA65_RS02295 0.60 +1.2 496,916 - DZA65_RS02295 0.66 +0.1 496,930 + DZA65_RS02295 0.68 +1.2 496,931 - DZA65_RS02295 0.68 +0.2 496,931 - DZA65_RS02295 0.68 -0.1 496,931 - DZA65_RS02295 0.68 -0.1 496,981 + DZA65_RS02295 0.76 +0.3 496,981 + DZA65_RS02295 0.76 +0.8 496,981 + DZA65_RS02295 0.76 -0.3 496,981 + DZA65_RS02295 0.76 +0.4 496,982 - DZA65_RS02295 0.76 -0.9 496,982 - DZA65_RS02295 0.76 -1.3 496,983 + DZA65_RS02295 0.76 -0.1 496,984 - DZA65_RS02295 0.76 +0.0 496,984 - DZA65_RS02295 0.76 +1.8 496,984 - DZA65_RS02295 0.76 +0.2 496,984 - DZA65_RS02295 0.76 -0.2 497,042 + DZA65_RS02295 0.85 +0.8 497,049 + DZA65_RS02295 0.86 +0.5 497,077 + -0.3 497,103 + +0.3 497,103 + -0.6 497,103 + +0.3 497,103 + +0.4 497,103 + -1.1 497,103 + -0.2 497,104 - -1.8 497,104 - +0.0 497,104 - +0.7 497,104 - +0.3 497,104 - -0.7 497,107 + -0.5 497,107 + +0.2 497,107 + +1.2 497,107 + -0.4 497,108 - -0.4 497,108 - -1.6 497,131 + -0.6 497,131 + -0.3 497,132 - -0.3 497,140 + +0.2 497,140 + +1.8 497,141 - -0.4 497,141 - +0.5 497,141 - +0.2 497,141 - +0.2 497,141 - -0.2 497,159 + -1.3 497,160 - -0.1 497,191 - +0.2 497,195 + +0.1 497,297 + DZA65_RS02300 0.15 -0.6 497,391 - DZA65_RS02300 0.30 -0.1 497,397 + DZA65_RS02300 0.31 +0.2 497,443 + DZA65_RS02300 0.39 -0.4 497,511 + DZA65_RS02300 0.50 -0.8 497,612 - DZA65_RS02300 0.66 -2.0 497,756 + DZA65_RS02300 0.90 -2.8 497,810 + -1.3 497,831 + +0.3 497,831 + +0.3 497,832 - -0.4 497,832 - -2.7 497,833 + +0.5 497,834 - +1.1 497,849 - -0.4 497,855 - +1.0 497,885 + +0.2 497,886 - +1.1 497,886 - -1.2 497,886 - -1.1 497,886 - +0.7 497,886 - -1.5 497,886 - -3.1 497,957 + DZA65_RS02305 0.17 +0.3 497,963 + DZA65_RS02305 0.18 -2.0 497,963 + DZA65_RS02305 0.18 +1.6 497,963 + DZA65_RS02305 0.18 +0.1 497,963 + DZA65_RS02305 0.18 -2.7 497,963 + DZA65_RS02305 0.18 -2.3 497,964 - DZA65_RS02305 0.18 +0.2 497,964 - DZA65_RS02305 0.18 +0.5 498,032 + DZA65_RS02305 0.30 -0.1 498,032 + DZA65_RS02305 0.30 -0.9 498,032 + DZA65_RS02305 0.30 -0.6 498,032 + DZA65_RS02305 0.30 -0.1 498,032 + DZA65_RS02305 0.30 -0.5 498,033 - DZA65_RS02305 0.30 +0.0 498,033 - DZA65_RS02305 0.30 -0.2 498,035 + DZA65_RS02305 0.30 +0.3 498,035 + DZA65_RS02305 0.30 -0.5 498,036 - DZA65_RS02305 0.30 +0.2 498,036 - DZA65_RS02305 0.30 -0.8 498,038 - DZA65_RS02305 0.31 +1.7 498,038 - DZA65_RS02305 0.31 -0.1 498,043 + DZA65_RS02305 0.32 +0.9 498,078 - DZA65_RS02305 0.38 +1.1 498,078 - DZA65_RS02305 0.38 -0.3 498,082 + DZA65_RS02305 0.38 -0.2 498,083 - DZA65_RS02305 0.38 -0.3 498,168 + DZA65_RS02305 0.53 +0.3 498,168 + DZA65_RS02305 0.53 +0.8 498,168 + DZA65_RS02305 0.53 -0.3 498,168 + DZA65_RS02305 0.53 +3.2 498,169 - DZA65_RS02305 0.53 -0.5 498,169 - DZA65_RS02305 0.53 -1.8 498,169 - -1.1 498,169 - DZA65_RS02305 0.53 +0.6 498,224 + -1.5 498,224 + DZA65_RS02305 0.62 -0.3 498,237 + DZA65_RS02305 0.64 -2.1 498,238 - DZA65_RS02305 0.64 +0.7 498,242 + DZA65_RS02305 0.65 +0.1 498,242 + DZA65_RS02305 0.65 +0.4 498,242 + DZA65_RS02305 0.65 -1.0 498,242 + DZA65_RS02305 0.65 +0.5 498,242 + DZA65_RS02305 0.65 -0.1 498,243 - DZA65_RS02305 0.65 +0.4 498,243 - DZA65_RS02305 0.65 -0.4 498,248 + DZA65_RS02305 0.66 -0.2 498,248 + DZA65_RS02305 0.66 +1.0 498,266 + DZA65_RS02305 0.69 -0.1 498,289 - DZA65_RS02305 0.73 -0.0 498,324 - DZA65_RS02305 0.79 -1.3 498,341 + DZA65_RS02305 0.81 -0.5 498,341 + DZA65_RS02305 0.81 +0.1 498,345 - DZA65_RS02305 0.82 +0.5 498,440 + -0.3 498,440 + +0.9 498,440 + -0.8 498,440 + -0.4 498,440 + -0.3 498,440 + -0.2 498,441 - +0.4 498,441 - +2.0 498,441 - +0.1 498,441 - +0.5 498,443 + +0.5 498,443 + -0.4 498,443 + -0.5 498,444 - -0.5 498,444 - -0.7 498,464 - +0.3 498,486 + -2.1 498,577 + -0.5 498,578 - -0.8 498,578 - +0.4 498,587 + -0.4 498,635 + DZA65_RS02310 0.17 +1.0 498,650 + DZA65_RS02310 0.19 +0.3 498,651 - DZA65_RS02310 0.19 -0.2 498,651 - DZA65_RS02310 0.19 +0.0 498,709 + DZA65_RS02310 0.28 -0.9 498,709 + DZA65_RS02310 0.28 +0.5 498,710 - DZA65_RS02310 0.29 +0.7 498,710 - DZA65_RS02310 0.29 -0.4 498,710 - DZA65_RS02310 0.29 -0.4 498,713 + DZA65_RS02310 0.29 +1.2 498,714 - DZA65_RS02310 0.29 +1.8 498,715 + DZA65_RS02310 0.29 +0.2 498,715 + DZA65_RS02310 0.29 +0.9 498,715 + DZA65_RS02310 0.29 -0.7 498,716 - DZA65_RS02310 0.30 -0.4 498,716 - DZA65_RS02310 0.30 +0.0 498,716 - DZA65_RS02310 0.30 -1.5 498,785 + DZA65_RS02310 0.40 +1.6 498,785 + DZA65_RS02310 0.40 +0.2
Or see this region's nucleotide sequence