Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01955 and DZA65_RS22785 are separated by 15 nucleotides DZA65_RS22785 and DZA65_RS01960 are separated by 433 nucleotides DZA65_RS01960 and DZA65_RS01965 are separated by 113 nucleotides DZA65_RS01965 and DZA65_RS01970 are separated by 16 nucleotides
DZA65_RS01955: DZA65_RS01955 - isopentenyl transferase, at 430,632 to 431,351
_RS01955
DZA65_RS22785: DZA65_RS22785 - hypothetical protein, at 431,367 to 431,870
_RS22785
DZA65_RS01960: DZA65_RS01960 - 2-iminobutanoate/2-iminopropanoate deaminase, at 432,304 to 432,690
_RS01960
DZA65_RS01965: DZA65_RS01965 - aspartate carbamoyltransferase regulatory subunit, at 432,804 to 433,268
_RS01965
DZA65_RS01970: DZA65_RS01970 - aspartate carbamoyltransferase, at 433,285 to 434,220
_RS01970
Position (kb) 432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 431.352 kb on - strand at 431.380 kb on + strand at 431.424 kb on + strand, within DZA65_RS22785 at 431.436 kb on + strand, within DZA65_RS22785 at 431.479 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.628 kb on - strand, within DZA65_RS22785 at 431.771 kb on - strand, within DZA65_RS22785 at 431.772 kb on + strand, within DZA65_RS22785 at 431.772 kb on + strand, within DZA65_RS22785 at 431.773 kb on - strand, within DZA65_RS22785 at 431.773 kb on - strand, within DZA65_RS22785 at 431.928 kb on + strand at 431.928 kb on + strand at 431.929 kb on - strand at 431.929 kb on - strand at 431.931 kb on - strand at 431.938 kb on + strand at 432.007 kb on + strand at 432.008 kb on - strand at 432.022 kb on + strand at 432.045 kb on + strand at 432.072 kb on + strand at 432.073 kb on - strand at 432.077 kb on + strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.091 kb on + strand at 432.107 kb on - strand at 432.216 kb on + strand at 432.217 kb on - strand at 432.249 kb on - strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.419 kb on + strand, within DZA65_RS01960 at 432.419 kb on + strand, within DZA65_RS01960 at 432.420 kb on - strand, within DZA65_RS01960 at 432.420 kb on - strand, within DZA65_RS01960 at 432.641 kb on + strand, within DZA65_RS01960 at 432.642 kb on - strand, within DZA65_RS01960 at 432.642 kb on - strand, within DZA65_RS01960 at 432.678 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.732 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.851 kb on - strand, within DZA65_RS01965 at 432.851 kb on - strand, within DZA65_RS01965 at 432.939 kb on - strand, within DZA65_RS01965 at 432.989 kb on + strand, within DZA65_RS01965 at 432.989 kb on + strand, within DZA65_RS01965 at 432.990 kb on - strand, within DZA65_RS01965 at 433.003 kb on + strand, within DZA65_RS01965 at 433.003 kb on + strand, within DZA65_RS01965 at 433.003 kb on + strand, within DZA65_RS01965 at 433.004 kb on - strand, within DZA65_RS01965 at 433.004 kb on - strand, within DZA65_RS01965 at 433.004 kb on - strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.039 kb on + strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.040 kb on - strand, within DZA65_RS01965 at 433.080 kb on - strand, within DZA65_RS01965 at 433.080 kb on - strand, within DZA65_RS01965 at 433.182 kb on + strand, within DZA65_RS01965 at 433.183 kb on - strand, within DZA65_RS01965 at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.242 kb on + strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.243 kb on - strand at 433.248 kb on + strand at 433.249 kb on - strand at 433.253 kb on + strand at 433.253 kb on + strand at 433.254 kb on - strand at 433.254 kb on - strand at 433.254 kb on - strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.274 kb on - strand at 433.338 kb on - strand at 433.338 kb on - strand at 433.341 kb on + strand at 433.341 kb on + strand at 433.364 kb on + strand at 433.364 kb on + strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.365 kb on - strand at 433.367 kb on + strand at 433.367 kb on + strand at 433.374 kb on - strand at 433.476 kb on + strand, within DZA65_RS01970 at 433.477 kb on - strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.499 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.541 kb on + strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.542 kb on - strand, within DZA65_RS01970 at 433.592 kb on + strand, within DZA65_RS01970 at 433.592 kb on + strand, within DZA65_RS01970 at 433.592 kb on + strand, within DZA65_RS01970 at 433.593 kb on - strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.628 kb on + strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.629 kb on - strand, within DZA65_RS01970 at 433.659 kb on + strand, within DZA65_RS01970 at 433.659 kb on + strand, within DZA65_RS01970 at 433.659 kb on + strand, within DZA65_RS01970 at 433.660 kb on - strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.664 kb on + strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970 at 433.665 kb on - strand, within DZA65_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 431,352 - +0.9 431,380 + -0.2 431,424 + DZA65_RS22785 0.11 -0.1 431,436 + DZA65_RS22785 0.14 +0.8 431,479 + DZA65_RS22785 0.22 -0.4 431,627 + DZA65_RS22785 0.52 -0.1 431,627 + DZA65_RS22785 0.52 +0.3 431,627 + DZA65_RS22785 0.52 +0.2 431,628 - DZA65_RS22785 0.52 +1.0 431,771 - DZA65_RS22785 0.80 -0.4 431,772 + DZA65_RS22785 0.80 +0.6 431,772 + DZA65_RS22785 0.80 -0.9 431,773 - DZA65_RS22785 0.81 -0.4 431,773 - DZA65_RS22785 0.81 -1.3 431,928 + -1.5 431,928 + -0.1 431,929 - -0.1 431,929 - -2.5 431,931 - +1.1 431,938 + +0.3 432,007 + -0.2 432,008 - -0.3 432,022 + -0.5 432,045 + +0.0 432,072 + -0.9 432,073 - -0.5 432,077 + -2.3 432,078 - +1.0 432,078 - +0.7 432,078 - +0.3 432,091 + +0.2 432,107 - -0.5 432,216 + +0.4 432,217 - +1.4 432,249 - -1.1 432,301 + -0.6 432,301 + +0.7 432,301 + +0.4 432,302 - -2.1 432,302 - -0.8 432,302 - -0.4 432,302 - +0.0 432,305 + -0.3 432,305 + -0.4 432,305 + +0.8 432,305 + +0.3 432,305 + +0.4 432,305 + -1.2 432,305 + +0.0 432,305 + -2.0 432,305 + -0.6 432,305 + +0.1 432,305 + -0.2 432,306 - -1.0 432,306 - +0.3 432,306 - -2.1 432,306 - -0.2 432,306 - -1.6 432,306 - +1.0 432,306 - +0.3 432,419 + DZA65_RS01960 0.30 -1.1 432,419 + DZA65_RS01960 0.30 -1.5 432,420 - DZA65_RS01960 0.30 -3.3 432,420 - DZA65_RS01960 0.30 +0.0 432,641 + DZA65_RS01960 0.87 -0.9 432,642 - DZA65_RS01960 0.87 -0.3 432,642 - DZA65_RS01960 0.87 -0.6 432,678 + +0.0 432,704 + +0.7 432,704 + +0.3 432,704 + -0.4 432,704 + -0.8 432,705 - -1.5 432,705 - +0.5 432,705 - +1.3 432,705 - -1.6 432,705 - +0.5 432,705 - -0.4 432,732 + +0.7 432,850 + +1.5 432,850 + -0.4 432,850 + +0.3 432,850 + -0.1 432,851 - DZA65_RS01965 0.10 +0.0 432,851 - DZA65_RS01965 0.10 +0.7 432,939 - DZA65_RS01965 0.29 +1.4 432,989 + DZA65_RS01965 0.40 +0.3 432,989 + DZA65_RS01965 0.40 +0.8 432,990 - DZA65_RS01965 0.40 -1.4 433,003 + DZA65_RS01965 0.43 +0.7 433,003 + DZA65_RS01965 0.43 -0.2 433,003 + DZA65_RS01965 0.43 +0.7 433,004 - DZA65_RS01965 0.43 +1.2 433,004 - DZA65_RS01965 0.43 -1.6 433,004 - DZA65_RS01965 0.43 -1.6 433,039 + DZA65_RS01965 0.51 -2.1 433,039 + DZA65_RS01965 0.51 -1.1 433,039 + DZA65_RS01965 0.51 -0.1 433,039 + DZA65_RS01965 0.51 +0.1 433,039 + DZA65_RS01965 0.51 +0.8 433,040 - DZA65_RS01965 0.51 -0.2 433,040 - DZA65_RS01965 0.51 -0.9 433,040 - DZA65_RS01965 0.51 -2.5 433,040 - DZA65_RS01965 0.51 +0.7 433,080 - DZA65_RS01965 0.59 -0.3 433,080 - DZA65_RS01965 0.59 -0.1 433,182 + DZA65_RS01965 0.81 -0.8 433,183 - DZA65_RS01965 0.82 +1.1 433,242 + +0.5 433,242 + -0.2 433,242 + +0.5 433,242 + +0.3 433,242 + -1.1 433,242 + +0.3 433,242 + -1.3 433,243 - +2.1 433,243 - +0.5 433,243 - +0.3 433,243 - -0.4 433,243 - +0.5 433,243 - +0.4 433,243 - -1.7 433,243 - -0.4 433,243 - +0.4 433,248 + -0.2 433,249 - +1.0 433,253 + -0.8 433,253 + +1.8 433,254 - +0.4 433,254 - -0.2 433,254 - +0.1 433,273 + +0.0 433,273 + -1.5 433,273 + +0.5 433,273 + +2.1 433,273 + -2.1 433,273 + +0.5 433,273 + +1.9 433,273 + +0.4 433,273 + +1.3 433,273 + +0.2 433,274 - +0.2 433,274 - +0.5 433,274 - -0.1 433,274 - -0.1 433,274 - +0.7 433,274 - -0.2 433,338 - +0.0 433,338 - -0.1 433,341 + +0.4 433,341 + +0.8 433,364 + +0.9 433,364 + +0.9 433,365 - +0.6 433,365 - +0.1 433,365 - +2.6 433,365 - -0.6 433,365 - -0.8 433,365 - -0.1 433,365 - +0.8 433,365 - +0.3 433,365 - -0.1 433,367 + -0.8 433,367 + +0.4 433,374 - -0.5 433,476 + DZA65_RS01970 0.20 -1.4 433,477 - DZA65_RS01970 0.21 -0.7 433,499 + DZA65_RS01970 0.23 -2.3 433,499 + DZA65_RS01970 0.23 -0.2 433,499 + DZA65_RS01970 0.23 -0.3 433,499 + DZA65_RS01970 0.23 +0.1 433,499 + DZA65_RS01970 0.23 +0.5 433,499 + DZA65_RS01970 0.23 -1.7 433,541 + DZA65_RS01970 0.27 +0.7 433,541 + DZA65_RS01970 0.27 +0.3 433,541 + DZA65_RS01970 0.27 +0.4 433,541 + DZA65_RS01970 0.27 +0.9 433,541 + DZA65_RS01970 0.27 -0.4 433,541 + DZA65_RS01970 0.27 +0.5 433,541 + DZA65_RS01970 0.27 +1.1 433,541 + DZA65_RS01970 0.27 -0.2 433,542 - DZA65_RS01970 0.27 -0.3 433,542 - DZA65_RS01970 0.27 +1.3 433,542 - DZA65_RS01970 0.27 +0.3 433,542 - DZA65_RS01970 0.27 -1.3 433,592 + DZA65_RS01970 0.33 -0.7 433,592 + DZA65_RS01970 0.33 +0.8 433,592 + DZA65_RS01970 0.33 -1.5 433,593 - DZA65_RS01970 0.33 +0.1 433,628 + DZA65_RS01970 0.37 -0.3 433,628 + DZA65_RS01970 0.37 -0.9 433,628 + DZA65_RS01970 0.37 +0.1 433,628 + DZA65_RS01970 0.37 +0.2 433,628 + DZA65_RS01970 0.37 -0.0 433,628 + DZA65_RS01970 0.37 -0.7 433,628 + DZA65_RS01970 0.37 -1.9 433,628 + DZA65_RS01970 0.37 -0.0 433,629 - DZA65_RS01970 0.37 +0.5 433,629 - DZA65_RS01970 0.37 -0.3 433,629 - DZA65_RS01970 0.37 +0.1 433,629 - DZA65_RS01970 0.37 +0.3 433,629 - DZA65_RS01970 0.37 -0.2 433,629 - DZA65_RS01970 0.37 +0.7 433,659 + DZA65_RS01970 0.40 -1.7 433,659 + DZA65_RS01970 0.40 -0.5 433,659 + DZA65_RS01970 0.40 -0.7 433,660 - DZA65_RS01970 0.40 +1.2 433,664 + DZA65_RS01970 0.40 +1.1 433,664 + DZA65_RS01970 0.40 +0.5 433,664 + DZA65_RS01970 0.40 -1.3 433,664 + DZA65_RS01970 0.40 -0.2 433,664 + DZA65_RS01970 0.40 +0.2 433,664 + DZA65_RS01970 0.40 -0.2 433,664 + DZA65_RS01970 0.40 -0.1 433,664 + DZA65_RS01970 0.40 +0.2 433,665 - DZA65_RS01970 0.41 -1.1 433,665 - DZA65_RS01970 0.41 -0.7 433,665 - DZA65_RS01970 0.41 +0.2 433,665 - DZA65_RS01970 0.41 -0.7 433,665 - DZA65_RS01970 0.41 -0.2
Or see this region's nucleotide sequence