Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01710 and DZA65_RS01715 are separated by 405 nucleotides DZA65_RS01715 and DZA65_RS01720 overlap by 4 nucleotides DZA65_RS01720 and DZA65_RS01725 are separated by 205 nucleotides
DZA65_RS01710: DZA65_RS01710 - outer membrane channel protein TolC, at 371,466 to 372,878
_RS01710
DZA65_RS01715: DZA65_RS01715 - ADP-ribose diphosphatase, at 373,284 to 373,937
_RS01715
DZA65_RS01720: DZA65_RS01720 - DUF1249 family protein, at 373,934 to 374,359
_RS01720
DZA65_RS01725: DZA65_RS01725 - 3',5'-cyclic-AMP phosphodiesterase, at 374,565 to 375,392
_RS01725
Position (kb) 373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.439 kb on + strand, within DZA65_RS01710 at 372.931 kb on + strand at 372.931 kb on + strand at 372.931 kb on + strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.968 kb on + strand at 372.968 kb on + strand at 372.969 kb on - strand at 372.969 kb on - strand at 372.969 kb on - strand at 372.969 kb on - strand at 372.969 kb on - strand at 373.020 kb on + strand at 373.020 kb on + strand at 373.021 kb on - strand at 373.021 kb on - strand at 373.021 kb on - strand at 373.025 kb on - strand at 373.116 kb on - strand at 373.144 kb on + strand at 373.144 kb on + strand at 373.144 kb on + strand at 373.145 kb on - strand at 373.145 kb on - strand at 373.165 kb on - strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.199 kb on - strand at 373.199 kb on - strand at 373.284 kb on - strand at 373.298 kb on + strand at 373.298 kb on + strand at 373.298 kb on + strand at 373.299 kb on - strand at 373.299 kb on - strand at 373.299 kb on - strand at 373.299 kb on - strand at 373.317 kb on - strand at 373.317 kb on - strand at 373.317 kb on - strand at 373.334 kb on + strand at 373.334 kb on + strand at 373.348 kb on + strand at 373.348 kb on + strand at 373.349 kb on - strand at 373.356 kb on - strand, within DZA65_RS01715 at 373.356 kb on - strand, within DZA65_RS01715 at 373.374 kb on + strand, within DZA65_RS01715 at 373.374 kb on + strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.495 kb on - strand, within DZA65_RS01715 at 373.525 kb on + strand, within DZA65_RS01715 at 373.525 kb on + strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.735 kb on + strand, within DZA65_RS01715 at 373.766 kb on + strand, within DZA65_RS01715 at 373.796 kb on + strand, within DZA65_RS01715 at 373.805 kb on - strand, within DZA65_RS01715 at 373.830 kb on + strand, within DZA65_RS01715 at 373.830 kb on + strand, within DZA65_RS01715 at 373.830 kb on + strand, within DZA65_RS01715 at 373.831 kb on - strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.946 kb on + strand at 373.946 kb on + strand at 373.946 kb on + strand at 373.947 kb on - strand at 373.947 kb on - strand at 373.949 kb on - strand at 373.949 kb on - strand at 373.949 kb on - strand at 373.949 kb on - strand at 374.001 kb on + strand, within DZA65_RS01720 at 374.002 kb on - strand, within DZA65_RS01720 at 374.002 kb on - strand, within DZA65_RS01720 at 374.021 kb on - strand, within DZA65_RS01720 at 374.048 kb on + strand, within DZA65_RS01720 at 374.069 kb on + strand, within DZA65_RS01720 at 374.070 kb on - strand, within DZA65_RS01720 at 374.076 kb on + strand, within DZA65_RS01720 at 374.092 kb on + strand, within DZA65_RS01720 at 374.093 kb on - strand, within DZA65_RS01720 at 374.099 kb on + strand, within DZA65_RS01720 at 374.099 kb on + strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.145 kb on - strand, within DZA65_RS01720 at 374.177 kb on + strand, within DZA65_RS01720 at 374.178 kb on - strand, within DZA65_RS01720 at 374.178 kb on - strand, within DZA65_RS01720 at 374.180 kb on + strand, within DZA65_RS01720 at 374.180 kb on + strand, within DZA65_RS01720 at 374.181 kb on - strand, within DZA65_RS01720 at 374.181 kb on - strand, within DZA65_RS01720 at 374.231 kb on - strand, within DZA65_RS01720 at 374.241 kb on - strand, within DZA65_RS01720 at 374.241 kb on - strand, within DZA65_RS01720 at 374.262 kb on + strand, within DZA65_RS01720 at 374.262 kb on + strand, within DZA65_RS01720 at 374.262 kb on + strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.319 kb on - strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.372 kb on + strand at 374.372 kb on + strand at 374.372 kb on + strand at 374.373 kb on - strand at 374.373 kb on - strand at 374.449 kb on + strand at 374.449 kb on + strand at 374.449 kb on + strand at 374.450 kb on - strand at 374.450 kb on - strand at 374.509 kb on + strand at 374.510 kb on - strand at 374.513 kb on + strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.563 kb on - strand at 374.563 kb on - strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.624 kb on - strand at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.772 kb on - strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.804 kb on + strand, within DZA65_RS01725 at 374.805 kb on - strand, within DZA65_RS01725
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 372,439 + DZA65_RS01710 0.69 -2.6 372,931 + -0.2 372,931 + -2.3 372,931 + -0.1 372,932 - +1.5 372,932 - +1.2 372,932 - -0.5 372,932 - -0.2 372,932 - -0.6 372,933 + -0.2 372,933 + -0.7 372,933 + -0.5 372,933 + +1.5 372,933 + +0.7 372,933 + -0.0 372,933 + +1.0 372,933 + -2.5 372,933 + +0.1 372,933 + +0.4 372,933 + +0.9 372,933 + -2.0 372,933 + +0.8 372,933 + -0.0 372,933 + -1.0 372,934 - -1.2 372,934 - -1.5 372,934 - -0.5 372,934 - -0.1 372,934 - +0.1 372,934 - +0.1 372,934 - -0.9 372,934 - -0.6 372,934 - +0.1 372,934 - -0.3 372,934 - +1.3 372,934 - -0.2 372,934 - -0.2 372,934 - -1.0 372,934 - -0.2 372,934 - +0.7 372,934 - -1.3 372,934 - -1.0 372,934 - +0.1 372,934 - +0.1 372,934 - -1.0 372,934 - +0.4 372,934 - -0.6 372,934 - +2.5 372,934 - +1.8 372,934 - +0.9 372,934 - +0.5 372,934 - -1.0 372,946 + +1.4 372,946 + +0.5 372,946 + +0.1 372,947 - -0.1 372,947 - -0.5 372,968 + -1.0 372,968 + -0.9 372,969 - -1.5 372,969 - -1.9 372,969 - +0.1 372,969 - -0.2 372,969 - -2.6 373,020 + +1.3 373,020 + -0.2 373,021 - +0.0 373,021 - +0.8 373,021 - -0.4 373,025 - -0.9 373,116 - -0.7 373,144 + -1.5 373,144 + +0.8 373,144 + +0.5 373,145 - +0.4 373,145 - +2.1 373,165 - -0.0 373,198 + -0.4 373,198 + -0.0 373,198 + -0.6 373,198 + +0.8 373,198 + -1.3 373,199 - -2.6 373,199 - +0.7 373,284 - -1.0 373,298 + -1.0 373,298 + -0.9 373,298 + -0.0 373,299 - -1.0 373,299 - -1.9 373,299 - -0.4 373,299 - -0.8 373,317 - +1.5 373,317 - +0.4 373,317 - +0.2 373,334 + -1.6 373,334 + +0.3 373,348 + +1.0 373,348 + +0.1 373,349 - -0.5 373,356 - DZA65_RS01715 0.11 +0.3 373,356 - DZA65_RS01715 0.11 -0.7 373,374 + DZA65_RS01715 0.14 +0.8 373,374 + DZA65_RS01715 0.14 +1.0 373,375 - DZA65_RS01715 0.14 -0.2 373,375 - DZA65_RS01715 0.14 -1.1 373,375 - DZA65_RS01715 0.14 -0.1 373,375 - DZA65_RS01715 0.14 +0.6 373,375 - DZA65_RS01715 0.14 +0.1 373,375 - DZA65_RS01715 0.14 -0.3 373,375 - DZA65_RS01715 0.14 -0.4 373,495 - DZA65_RS01715 0.32 -2.0 373,525 + DZA65_RS01715 0.37 -0.0 373,525 + DZA65_RS01715 0.37 -0.5 373,526 - DZA65_RS01715 0.37 -0.4 373,526 - DZA65_RS01715 0.37 +1.3 373,526 - DZA65_RS01715 0.37 -0.9 373,526 - DZA65_RS01715 0.37 +0.2 373,526 - DZA65_RS01715 0.37 -0.4 373,526 - DZA65_RS01715 0.37 +0.5 373,526 - DZA65_RS01715 0.37 -1.0 373,526 - DZA65_RS01715 0.37 -0.7 373,526 - DZA65_RS01715 0.37 -1.8 373,690 - DZA65_RS01715 0.62 +0.1 373,690 - DZA65_RS01715 0.62 -0.1 373,690 - DZA65_RS01715 0.62 -1.0 373,690 - DZA65_RS01715 0.62 -0.1 373,735 + DZA65_RS01715 0.69 -1.5 373,766 + DZA65_RS01715 0.74 +0.1 373,796 + DZA65_RS01715 0.78 -1.0 373,805 - DZA65_RS01715 0.80 -1.4 373,830 + DZA65_RS01715 0.83 +0.2 373,830 + DZA65_RS01715 0.83 +0.4 373,830 + DZA65_RS01715 0.83 +1.0 373,831 - -0.5 373,912 + +0.7 373,912 + -0.2 373,946 + +0.5 373,946 + -1.8 373,946 + -2.5 373,947 - -0.1 373,947 - -1.0 373,949 - -0.4 373,949 - +0.1 373,949 - -0.9 373,949 - +0.6 374,001 + DZA65_RS01720 0.16 +0.8 374,002 - DZA65_RS01720 0.16 -0.3 374,002 - DZA65_RS01720 0.16 -0.6 374,021 - DZA65_RS01720 0.20 -1.6 374,048 + DZA65_RS01720 0.27 -2.5 374,069 + DZA65_RS01720 0.32 -0.2 374,070 - DZA65_RS01720 0.32 -0.2 374,076 + DZA65_RS01720 0.33 -0.3 374,092 + DZA65_RS01720 0.37 -0.8 374,093 - DZA65_RS01720 0.37 +0.3 374,099 + DZA65_RS01720 0.39 -0.8 374,099 + DZA65_RS01720 0.39 +0.5 374,100 - DZA65_RS01720 0.39 -0.2 374,100 - DZA65_RS01720 0.39 -0.3 374,100 - DZA65_RS01720 0.39 -0.7 374,100 - DZA65_RS01720 0.39 -1.8 374,145 - DZA65_RS01720 0.50 -0.1 374,177 + DZA65_RS01720 0.57 +0.5 374,178 - DZA65_RS01720 0.57 +1.4 374,178 - DZA65_RS01720 0.57 -0.2 374,180 + DZA65_RS01720 0.58 +0.5 374,180 + DZA65_RS01720 0.58 +0.1 374,181 - DZA65_RS01720 0.58 -1.5 374,181 - DZA65_RS01720 0.58 -0.5 374,231 - DZA65_RS01720 0.70 +0.4 374,241 - DZA65_RS01720 0.72 -0.9 374,241 - DZA65_RS01720 0.72 +0.8 374,262 + DZA65_RS01720 0.77 -0.7 374,262 + DZA65_RS01720 0.77 -0.8 374,262 + DZA65_RS01720 0.77 -0.3 374,263 - DZA65_RS01720 0.77 +0.2 374,263 - DZA65_RS01720 0.77 -0.1 374,263 - DZA65_RS01720 0.77 -1.1 374,263 - DZA65_RS01720 0.77 +0.6 374,263 - DZA65_RS01720 0.77 +0.4 374,319 - -1.1 374,357 + -0.3 374,357 + +0.2 374,357 + -1.6 374,357 + -1.1 374,357 + +1.3 374,357 + -2.0 374,357 + -1.2 374,357 + -0.5 374,357 + +0.5 374,357 + -0.1 374,357 + -0.7 374,357 + +0.1 374,358 - -0.6 374,358 - -0.2 374,358 - -0.1 374,358 - -0.4 374,358 - -1.0 374,358 - -0.5 374,358 - -0.6 374,358 - +0.4 374,358 - -1.6 374,358 - -0.3 374,358 - +0.5 374,361 + -0.2 374,361 + -0.8 374,361 + -0.2 374,361 + +0.2 374,361 + -0.0 374,361 + -0.9 374,362 - -0.1 374,362 - +0.1 374,362 - -0.9 374,362 - -0.8 374,362 - +0.1 374,362 - +1.2 374,362 - -1.2 374,362 - -0.0 374,363 + -1.2 374,363 + -0.4 374,363 + +0.4 374,363 + -0.1 374,372 + +1.3 374,372 + +0.2 374,372 + -0.1 374,373 - -0.6 374,373 - -0.5 374,449 + +0.3 374,449 + -0.3 374,449 + +0.5 374,450 - -0.2 374,450 - +2.5 374,509 + -0.7 374,510 - -0.5 374,513 + +0.2 374,514 - -0.2 374,514 - +0.0 374,514 - -0.5 374,521 + -0.5 374,521 + -1.5 374,521 + -0.5 374,521 + +0.7 374,521 + +1.5 374,521 + -0.9 374,521 + -1.0 374,521 + -1.4 374,521 + -0.7 374,521 + -0.0 374,521 + +0.9 374,521 + -0.3 374,521 + -0.3 374,521 + +0.5 374,521 + -3.1 374,522 - +0.3 374,522 - -1.5 374,522 - +0.6 374,522 - +0.7 374,522 - +0.0 374,522 - +0.5 374,522 - -0.0 374,522 - -0.1 374,522 - -0.4 374,522 - -0.1 374,522 - -2.0 374,522 - -1.0 374,522 - -0.1 374,522 - +0.5 374,562 + -0.5 374,562 + +0.7 374,562 + -0.4 374,563 - +0.2 374,563 - +0.8 374,623 + -0.0 374,623 + +0.2 374,623 + -2.5 374,623 + +0.4 374,624 - -0.5 374,675 + DZA65_RS01725 0.13 +0.1 374,675 + DZA65_RS01725 0.13 -0.3 374,675 + DZA65_RS01725 0.13 +0.2 374,675 + DZA65_RS01725 0.13 +0.4 374,675 + DZA65_RS01725 0.13 +0.9 374,676 - DZA65_RS01725 0.13 +0.4 374,676 - DZA65_RS01725 0.13 -0.3 374,676 - DZA65_RS01725 0.13 +0.1 374,676 - DZA65_RS01725 0.13 +0.2 374,676 - DZA65_RS01725 0.13 -0.5 374,679 + DZA65_RS01725 0.14 -0.2 374,679 + DZA65_RS01725 0.14 -0.2 374,679 + DZA65_RS01725 0.14 -0.3 374,680 - DZA65_RS01725 0.14 -0.9 374,680 - DZA65_RS01725 0.14 -0.2 374,680 - DZA65_RS01725 0.14 +0.7 374,680 - DZA65_RS01725 0.14 +0.5 374,771 + DZA65_RS01725 0.25 -1.6 374,771 + DZA65_RS01725 0.25 +1.4 374,772 - DZA65_RS01725 0.25 -0.1 374,784 + DZA65_RS01725 0.26 -1.0 374,784 + DZA65_RS01725 0.26 +1.2 374,784 + DZA65_RS01725 0.26 +0.2 374,784 + DZA65_RS01725 0.26 -0.5 374,784 + DZA65_RS01725 0.26 -0.5 374,785 - DZA65_RS01725 0.27 -1.3 374,785 - DZA65_RS01725 0.27 +1.4 374,785 - DZA65_RS01725 0.27 -1.4 374,785 - DZA65_RS01725 0.27 -0.0 374,785 - DZA65_RS01725 0.27 +1.1 374,785 - DZA65_RS01725 0.27 -0.1 374,785 - DZA65_RS01725 0.27 -0.4 374,785 - DZA65_RS01725 0.27 -0.8 374,804 + DZA65_RS01725 0.29 -0.6 374,805 - DZA65_RS01725 0.29 -1.0
Or see this region's nucleotide sequence