Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01500 and DZA65_RS01505 are separated by 92 nucleotides DZA65_RS01505 and DZA65_RS01510 are separated by 24 nucleotides DZA65_RS01510 and DZA65_RS01515 are separated by 49 nucleotides DZA65_RS01515 and DZA65_RS01520 are separated by 15 nucleotides
DZA65_RS01500: DZA65_RS01500 - PTS IIA-like nitrogen regulatory protein PtsN, at 330,580 to 331,068
_RS01500
DZA65_RS01505: DZA65_RS01505 - ribosome hibernation promoting factor, at 331,161 to 331,448
_RS01505
DZA65_RS01510: DZA65_RS01510 - RNA polymerase factor sigma-54, at 331,473 to 332,906
_RS01510
DZA65_RS01515: DZA65_RS01515 - LPS export ABC transporter ATP-binding protein, at 332,956 to 333,681
_RS01515
DZA65_RS01520: DZA65_RS01520 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 333,697 to 334,275
_RS01520
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.482 kb on + strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.486 kb on + strand at 330.487 kb on - strand at 330.487 kb on - strand at 330.487 kb on - strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.702 kb on + strand, within DZA65_RS01500 at 330.702 kb on + strand, within DZA65_RS01500 at 330.702 kb on + strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.706 kb on + strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.717 kb on + strand, within DZA65_RS01500 at 330.717 kb on + strand, within DZA65_RS01500 at 330.718 kb on - strand, within DZA65_RS01500 at 330.831 kb on + strand, within DZA65_RS01500 at 330.832 kb on - strand, within DZA65_RS01500 at 330.832 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 331.011 kb on + strand, within DZA65_RS01500 at 331.017 kb on + strand, within DZA65_RS01500 at 331.017 kb on + strand, within DZA65_RS01500 at 331.018 kb on - strand, within DZA65_RS01500 at 331.018 kb on - strand, within DZA65_RS01500 at 331.042 kb on - strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.081 kb on + strand at 331.081 kb on + strand at 331.082 kb on - strand at 331.082 kb on - strand at 331.082 kb on - strand at 331.119 kb on + strand at 331.120 kb on - strand at 331.120 kb on - strand at 331.120 kb on - strand at 331.184 kb on + strand at 331.184 kb on + strand at 331.185 kb on - strand at 331.185 kb on - strand at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.241 kb on + strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.336 kb on + strand, within DZA65_RS01505 at 331.336 kb on + strand, within DZA65_RS01505 at 331.337 kb on - strand, within DZA65_RS01505 at 331.337 kb on - strand, within DZA65_RS01505 at 331.349 kb on + strand, within DZA65_RS01505 at 331.350 kb on - strand, within DZA65_RS01505 at 331.350 kb on - strand, within DZA65_RS01505 at 331.360 kb on + strand, within DZA65_RS01505 at 331.361 kb on - strand, within DZA65_RS01505 at 331.439 kb on + strand at 331.439 kb on + strand at 331.440 kb on - strand at 331.448 kb on + strand at 331.467 kb on + strand at 331.468 kb on - strand at 331.488 kb on - strand at 331.488 kb on - strand at 331.512 kb on + strand at 331.512 kb on + strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.706 kb on - strand, within DZA65_RS01510 at 331.706 kb on - strand, within DZA65_RS01510 at 331.706 kb on - strand, within DZA65_RS01510 at 331.722 kb on - strand, within DZA65_RS01510 at 331.733 kb on + strand, within DZA65_RS01510 at 331.814 kb on + strand, within DZA65_RS01510 at 331.815 kb on - strand, within DZA65_RS01510 at 331.815 kb on - strand, within DZA65_RS01510 at 332.000 kb on - strand, within DZA65_RS01510 at 332.070 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.169 kb on + strand, within DZA65_RS01510 at 332.169 kb on + strand, within DZA65_RS01510 at 332.170 kb on - strand, within DZA65_RS01510 at 332.170 kb on - strand, within DZA65_RS01510 at 332.170 kb on - strand at 332.283 kb on - strand, within DZA65_RS01510 at 332.283 kb on - strand, within DZA65_RS01510 at 332.440 kb on - strand, within DZA65_RS01510 at 332.540 kb on - strand, within DZA65_RS01510 at 332.572 kb on + strand, within DZA65_RS01510 at 332.573 kb on - strand, within DZA65_RS01510 at 332.675 kb on + strand, within DZA65_RS01510 at 332.850 kb on + strand at 332.865 kb on - strand at 332.907 kb on - strand at 332.916 kb on + strand at 332.916 kb on + strand at 332.917 kb on - strand at 332.917 kb on - strand at 332.942 kb on - strand at 332.942 kb on - strand at 332.942 kb on - strand at 332.942 kb on - strand at 332.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 330,482 + -0.8 330,483 - +0.2 330,483 - -1.2 330,483 - -0.3 330,483 - -1.8 330,486 + -1.8 330,487 - +0.3 330,487 - -0.2 330,487 - +0.3 330,539 + -0.2 330,539 + -1.1 330,539 + -0.3 330,539 + -0.6 330,540 - -0.5 330,540 - +0.1 330,540 - -0.6 330,540 - +0.6 330,540 - -0.1 330,540 - -1.1 330,540 - -0.0 330,702 + DZA65_RS01500 0.25 -0.0 330,702 + DZA65_RS01500 0.25 -1.0 330,702 + DZA65_RS01500 0.25 -0.3 330,703 - DZA65_RS01500 0.25 -0.0 330,703 - DZA65_RS01500 0.25 +0.3 330,703 - DZA65_RS01500 0.25 -1.0 330,703 - DZA65_RS01500 0.25 +0.6 330,706 + DZA65_RS01500 0.26 -1.0 330,707 - DZA65_RS01500 0.26 -0.2 330,707 - DZA65_RS01500 0.26 +0.6 330,707 - DZA65_RS01500 0.26 -1.8 330,707 - DZA65_RS01500 0.26 -0.5 330,707 - DZA65_RS01500 0.26 +0.4 330,707 - DZA65_RS01500 0.26 +0.6 330,707 - DZA65_RS01500 0.26 -0.2 330,717 + DZA65_RS01500 0.28 -1.4 330,717 + DZA65_RS01500 0.28 -1.8 330,718 - DZA65_RS01500 0.28 -0.0 330,831 + DZA65_RS01500 0.51 -1.4 330,832 - DZA65_RS01500 0.52 -0.4 330,832 - DZA65_RS01500 0.52 +0.3 330,895 - DZA65_RS01500 0.64 -2.0 330,895 - DZA65_RS01500 0.64 -1.4 330,895 - DZA65_RS01500 0.64 -2.4 331,011 + DZA65_RS01500 0.88 -1.2 331,017 + DZA65_RS01500 0.89 -0.7 331,017 + DZA65_RS01500 0.89 -0.4 331,018 - DZA65_RS01500 0.90 -1.1 331,018 - DZA65_RS01500 0.90 +0.6 331,042 - +0.0 331,071 + -0.8 331,071 + -0.2 331,071 + -0.1 331,071 + +0.1 331,071 + -1.0 331,071 + -0.0 331,071 + -0.4 331,072 - -0.6 331,072 - +2.2 331,072 - +2.2 331,072 - -0.3 331,072 - -1.8 331,072 - +0.2 331,072 - -0.2 331,072 - -1.3 331,072 - +1.6 331,072 - +0.4 331,072 - +0.3 331,072 - +0.1 331,072 - +1.0 331,072 - +0.7 331,072 - -0.8 331,081 + +1.2 331,081 + -1.1 331,082 - +1.1 331,082 - +0.4 331,082 - +0.8 331,119 + -1.9 331,120 - +1.2 331,120 - +0.8 331,120 - -0.4 331,184 + -0.2 331,184 + -0.2 331,185 - -1.3 331,185 - -0.5 331,237 + DZA65_RS01505 0.26 -0.4 331,237 + DZA65_RS01505 0.26 +2.2 331,237 + DZA65_RS01505 0.26 -1.0 331,237 + DZA65_RS01505 0.26 +0.1 331,237 + DZA65_RS01505 0.26 +0.8 331,238 - DZA65_RS01505 0.27 +0.6 331,238 - DZA65_RS01505 0.27 -2.0 331,238 - DZA65_RS01505 0.27 +1.0 331,238 - DZA65_RS01505 0.27 +0.8 331,238 - DZA65_RS01505 0.27 -1.0 331,238 - DZA65_RS01505 0.27 -0.2 331,241 + DZA65_RS01505 0.28 +0.4 331,242 - DZA65_RS01505 0.28 +0.1 331,242 - DZA65_RS01505 0.28 +0.8 331,242 - DZA65_RS01505 0.28 -0.7 331,336 + DZA65_RS01505 0.61 -0.2 331,336 + DZA65_RS01505 0.61 +1.4 331,337 - DZA65_RS01505 0.61 -0.6 331,337 - DZA65_RS01505 0.61 +0.6 331,349 + DZA65_RS01505 0.65 +0.1 331,350 - DZA65_RS01505 0.66 -0.2 331,350 - DZA65_RS01505 0.66 -0.8 331,360 + DZA65_RS01505 0.69 +0.8 331,361 - DZA65_RS01505 0.69 -0.2 331,439 + +1.2 331,439 + +0.9 331,440 - -0.2 331,448 + +0.1 331,467 + -1.9 331,468 - -1.2 331,488 - +0.9 331,488 - -0.1 331,512 + -1.4 331,512 + -0.6 331,513 - -1.0 331,513 - -0.0 331,513 - -0.9 331,513 - -1.0 331,706 - DZA65_RS01510 0.16 +1.2 331,706 - DZA65_RS01510 0.16 -0.7 331,706 - DZA65_RS01510 0.16 -1.2 331,722 - DZA65_RS01510 0.17 -0.0 331,733 + DZA65_RS01510 0.18 -1.4 331,814 + DZA65_RS01510 0.24 +0.9 331,815 - DZA65_RS01510 0.24 -1.4 331,815 - DZA65_RS01510 0.24 -1.3 332,000 - DZA65_RS01510 0.37 -0.8 332,070 - DZA65_RS01510 0.42 -0.8 332,096 - DZA65_RS01510 0.43 -1.2 332,096 - DZA65_RS01510 0.43 -1.0 332,096 - DZA65_RS01510 0.43 -2.5 332,096 - DZA65_RS01510 0.43 -1.0 332,169 + DZA65_RS01510 0.49 -0.7 332,169 + DZA65_RS01510 0.49 -3.3 332,170 - DZA65_RS01510 0.49 -0.2 332,170 - DZA65_RS01510 0.49 -0.6 332,170 - +0.6 332,283 - DZA65_RS01510 0.56 +0.2 332,283 - DZA65_RS01510 0.56 -1.0 332,440 - DZA65_RS01510 0.67 -0.8 332,540 - DZA65_RS01510 0.74 -1.3 332,572 + DZA65_RS01510 0.77 -2.6 332,573 - DZA65_RS01510 0.77 -1.8 332,675 + DZA65_RS01510 0.84 -3.2 332,850 + +0.3 332,865 - +0.3 332,907 - +0.2 332,916 + -0.0 332,916 + -1.0 332,917 - +0.6 332,917 - +0.2 332,942 - +0.3 332,942 - +0.2 332,942 - +0.8 332,942 - +0.2 332,955 - +1.1
Or see this region's nucleotide sequence