Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01430

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS01420 and DZA65_RS01425 are separated by 24 nucleotidesDZA65_RS01425 and DZA65_RS01430 overlap by 11 nucleotidesDZA65_RS01430 and DZA65_RS01435 are separated by 109 nucleotides DZA65_RS01420: DZA65_RS01420 - rod shape-determining protein MreD, at 312,824 to 313,312 _RS01420 DZA65_RS01425: DZA65_RS01425 - septum formation inhibitor Maf, at 313,337 to 313,930 _RS01425 DZA65_RS01430: DZA65_RS01430 - ribonuclease G, at 313,920 to 315,389 _RS01430 DZA65_RS01435: DZA65_RS01435 - AsmA2 domain-containing protein, at 315,499 to 319,335 _RS01435 Position (kb) 313 314 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 313.310 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.311 kb on - strandat 313.311 kb on - strandat 313.313 kb on + strandat 313.314 kb on - strandat 313.314 kb on - strandat 313.324 kb on + strandat 313.325 kb on - strandat 313.349 kb on + strandat 313.349 kb on + strandat 313.350 kb on - strandat 313.350 kb on - strandat 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.707 kb on + strand, within DZA65_RS01425at 313.708 kb on - strand, within DZA65_RS01425at 313.708 kb on - strand, within DZA65_RS01425at 313.738 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.746 kb on - strandat 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.784 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.836 kb on - strandat 313.836 kb on - strand, within DZA65_RS01425at 313.904 kb on - strandat 313.971 kb on + strandat 314.040 kb on - strandat 314.043 kb on + strandat 314.043 kb on + strandat 314.147 kb on + strand, within DZA65_RS01430at 314.304 kb on + strand, within DZA65_RS01430at 314.352 kb on - strand, within DZA65_RS01430at 314.423 kb on + strand, within DZA65_RS01430at 314.424 kb on - strand, within DZA65_RS01430at 314.424 kb on - strand, within DZA65_RS01430at 314.634 kb on + strand, within DZA65_RS01430at 314.634 kb on + strand, within DZA65_RS01430at 314.635 kb on - strand, within DZA65_RS01430at 314.635 kb on - strand, within DZA65_RS01430at 314.664 kb on + strand, within DZA65_RS01430at 314.697 kb on + strand, within DZA65_RS01430at 314.697 kb on + strand, within DZA65_RS01430at 314.698 kb on - strand, within DZA65_RS01430at 315.022 kb on + strand, within DZA65_RS01430at 315.109 kb on + strand, within DZA65_RS01430at 315.109 kb on + strand, within DZA65_RS01430at 315.109 kb on + strand, within DZA65_RS01430at 315.110 kb on - strandat 315.110 kb on - strand, within DZA65_RS01430at 315.110 kb on - strand, within DZA65_RS01430at 315.110 kb on - strand, within DZA65_RS01430at 315.183 kb on + strand, within DZA65_RS01430at 315.183 kb on + strand, within DZA65_RS01430at 315.222 kb on + strand, within DZA65_RS01430at 315.222 kb on + strand, within DZA65_RS01430at 315.222 kb on + strand, within DZA65_RS01430at 315.222 kb on + strand, within DZA65_RS01430at 315.222 kb on + strand, within DZA65_RS01430at 315.223 kb on - strand, within DZA65_RS01430at 315.246 kb on + strandat 315.247 kb on - strandat 315.247 kb on - strandat 315.355 kb on - strandat 315.355 kb on - strandat 315.355 kb on - strandat 315.387 kb on + strandat 315.387 kb on + strandat 315.387 kb on + strandat 315.387 kb on + strandat 315.387 kb on + strandat 315.387 kb on + strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.388 kb on - strandat 315.436 kb on + strandat 315.437 kb on - strandat 315.437 kb on - strandat 315.500 kb on + strandat 315.500 kb on + strandat 315.518 kb on + strandat 315.518 kb on + strandat 315.518 kb on + strandat 315.529 kb on - strandat 315.600 kb on + strandat 315.600 kb on + strandat 315.601 kb on - strandat 315.601 kb on - strandat 315.721 kb on - strandat 315.756 kb on + strandat 315.756 kb on + strandat 315.756 kb on + strandat 315.827 kb on - strandat 315.839 kb on + strandat 315.839 kb on + strandat 315.839 kb on + strandat 315.840 kb on - strandat 315.840 kb on - strandat 316.054 kb on - strand, within DZA65_RS01435at 316.145 kb on - strand, within DZA65_RS01435at 316.263 kb on + strand, within DZA65_RS01435at 316.263 kb on + strand, within DZA65_RS01435at 316.264 kb on - strand, within DZA65_RS01435at 316.264 kb on - strand, within DZA65_RS01435at 316.264 kb on - strand, within DZA65_RS01435at 316.264 kb on - strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.265 kb on + strand, within DZA65_RS01435at 316.266 kb on - strand, within DZA65_RS01435at 316.266 kb on - strand, within DZA65_RS01435at 316.266 kb on - strand, within DZA65_RS01435at 316.266 kb on - strand, within DZA65_RS01435at 316.266 kb on - strand, within DZA65_RS01435at 316.266 kb on - strand, within DZA65_RS01435at 316.267 kb on + strand, within DZA65_RS01435at 316.267 kb on + strand, within DZA65_RS01435at 316.267 kb on + strand, within DZA65_RS01435at 316.267 kb on + strand, within DZA65_RS01435at 316.268 kb on - strand, within DZA65_RS01435at 316.268 kb on - strand, within DZA65_RS01435at 316.268 kb on - strand, within DZA65_RS01435at 316.268 kb on - strand, within DZA65_RS01435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
313,310 + -0.0
313,310 + +0.2
313,310 + -0.4
313,310 + -0.2
313,311 - -1.2
313,311 - -0.0
313,313 + -1.4
313,314 - -1.0
313,314 - -1.0
313,324 + -0.0
313,325 - +0.1
313,349 + +0.1
313,349 + -0.2
313,350 - -1.3
313,350 - -1.4
313,466 + DZA65_RS01425 0.22 +1.0
313,466 + DZA65_RS01425 0.22 +1.5
313,466 + DZA65_RS01425 0.22 +0.7
313,466 + DZA65_RS01425 0.22 +0.4
313,466 + DZA65_RS01425 0.22 +0.6
313,466 + DZA65_RS01425 0.22 +0.2
313,467 - DZA65_RS01425 0.22 +0.3
313,467 - DZA65_RS01425 0.22 +1.3
313,467 - DZA65_RS01425 0.22 -0.8
313,467 - DZA65_RS01425 0.22 +0.2
313,467 - DZA65_RS01425 0.22 -2.0
313,467 - DZA65_RS01425 0.22 -0.4
313,707 + DZA65_RS01425 0.62 +0.8
313,708 - DZA65_RS01425 0.62 -0.8
313,708 - DZA65_RS01425 0.62 -1.9
313,738 + DZA65_RS01425 0.68 +0.5
313,745 + DZA65_RS01425 0.69 -2.0
313,745 + DZA65_RS01425 0.69 +0.1
313,745 + DZA65_RS01425 0.69 +0.9
313,745 + DZA65_RS01425 0.69 +0.7
313,745 + DZA65_RS01425 0.69 +0.2
313,745 + DZA65_RS01425 0.69 -1.4
313,745 + DZA65_RS01425 0.69 +0.2
313,745 + DZA65_RS01425 0.69 -0.9
313,745 + DZA65_RS01425 0.69 -0.4
313,745 + DZA65_RS01425 0.69 -0.7
313,745 + DZA65_RS01425 0.69 -0.6
313,745 + DZA65_RS01425 0.69 +0.6
313,745 + DZA65_RS01425 0.69 -0.0
313,745 + DZA65_RS01425 0.69 +0.1
313,745 + DZA65_RS01425 0.69 +0.8
313,745 + DZA65_RS01425 0.69 +0.3
313,746 - +0.2
313,746 - DZA65_RS01425 0.69 +0.6
313,746 - DZA65_RS01425 0.69 -1.1
313,746 - DZA65_RS01425 0.69 -0.0
313,746 - DZA65_RS01425 0.69 -0.2
313,746 - DZA65_RS01425 0.69 -0.2
313,746 - DZA65_RS01425 0.69 +1.3
313,746 - DZA65_RS01425 0.69 +1.6
313,746 - DZA65_RS01425 0.69 +0.4
313,746 - DZA65_RS01425 0.69 -2.2
313,746 - DZA65_RS01425 0.69 +0.1
313,746 - DZA65_RS01425 0.69 -1.0
313,746 - DZA65_RS01425 0.69 +0.6
313,746 - DZA65_RS01425 0.69 +0.9
313,784 + DZA65_RS01425 0.75 +0.1
313,835 + DZA65_RS01425 0.84 -1.3
313,835 + DZA65_RS01425 0.84 +0.3
313,835 + DZA65_RS01425 0.84 -0.2
313,835 + DZA65_RS01425 0.84 +1.7
313,836 - +0.6
313,836 - DZA65_RS01425 0.84 -1.0
313,904 - +0.8
313,971 + +1.2
314,040 - -1.0
314,043 + -0.8
314,043 + -0.2
314,147 + DZA65_RS01430 0.15 -1.4
314,304 + DZA65_RS01430 0.26 -1.8
314,352 - DZA65_RS01430 0.29 -1.0
314,423 + DZA65_RS01430 0.34 +0.2
314,424 - DZA65_RS01430 0.34 -1.8
314,424 - DZA65_RS01430 0.34 -1.0
314,634 + DZA65_RS01430 0.49 -0.8
314,634 + DZA65_RS01430 0.49 -0.7
314,635 - DZA65_RS01430 0.49 -0.4
314,635 - DZA65_RS01430 0.49 +0.6
314,664 + DZA65_RS01430 0.51 -0.4
314,697 + DZA65_RS01430 0.53 +0.3
314,697 + DZA65_RS01430 0.53 -1.3
314,698 - DZA65_RS01430 0.53 -1.6
315,022 + DZA65_RS01430 0.75 -3.1
315,109 + DZA65_RS01430 0.81 +0.6
315,109 + DZA65_RS01430 0.81 +0.7
315,109 + DZA65_RS01430 0.81 -0.4
315,110 - -0.8
315,110 - DZA65_RS01430 0.81 -2.0
315,110 - DZA65_RS01430 0.81 -0.0
315,110 - DZA65_RS01430 0.81 +1.4
315,183 + DZA65_RS01430 0.86 +0.6
315,183 + DZA65_RS01430 0.86 -0.5
315,222 + DZA65_RS01430 0.89 -1.4
315,222 + DZA65_RS01430 0.89 +0.1
315,222 + DZA65_RS01430 0.89 +0.6
315,222 + DZA65_RS01430 0.89 -1.0
315,222 + DZA65_RS01430 0.89 -0.4
315,223 - DZA65_RS01430 0.89 -1.4
315,246 + -0.6
315,247 - -0.1
315,247 - +0.6
315,355 - +0.9
315,355 - -0.0
315,355 - +0.0
315,387 + -0.8
315,387 + -0.4
315,387 + -0.7
315,387 + -0.3
315,387 + -1.4
315,387 + -1.0
315,388 - +1.2
315,388 - -1.8
315,388 - +1.2
315,388 - +2.2
315,388 - -2.0
315,388 - -0.8
315,388 - -2.2
315,388 - -1.0
315,388 - +0.6
315,388 - -1.2
315,388 - -0.7
315,388 - +1.2
315,388 - -1.8
315,388 - +0.6
315,436 + +0.3
315,437 - -0.4
315,437 - -0.7
315,500 + +0.1
315,500 + +0.2
315,518 + -2.0
315,518 + -0.4
315,518 + +0.3
315,529 - -0.4
315,600 + -0.0
315,600 + -0.4
315,601 - +0.6
315,601 - +0.6
315,721 - +0.6
315,756 + +0.8
315,756 + -1.0
315,756 + -0.4
315,827 - +0.6
315,839 + -0.6
315,839 + -0.6
315,839 + +1.2
315,840 - -2.0
315,840 - -0.4
316,054 - DZA65_RS01435 0.14 -0.4
316,145 - DZA65_RS01435 0.17 +0.2
316,263 + DZA65_RS01435 0.20 +0.2
316,263 + DZA65_RS01435 0.20 -2.0
316,264 - DZA65_RS01435 0.20 -0.4
316,264 - DZA65_RS01435 0.20 -2.2
316,264 - DZA65_RS01435 0.20 -0.0
316,264 - DZA65_RS01435 0.20 -1.8
316,265 + DZA65_RS01435 0.20 -2.0
316,265 + DZA65_RS01435 0.20 +0.2
316,265 + DZA65_RS01435 0.20 -1.0
316,265 + DZA65_RS01435 0.20 -0.4
316,265 + DZA65_RS01435 0.20 -2.8
316,265 + DZA65_RS01435 0.20 +1.2
316,265 + DZA65_RS01435 0.20 -0.8
316,265 + DZA65_RS01435 0.20 -1.0
316,265 + DZA65_RS01435 0.20 +0.1
316,265 + DZA65_RS01435 0.20 +0.2
316,266 - DZA65_RS01435 0.20 -0.3
316,266 - DZA65_RS01435 0.20 -1.8
316,266 - DZA65_RS01435 0.20 +0.3
316,266 - DZA65_RS01435 0.20 +0.6
316,266 - DZA65_RS01435 0.20 +0.8
316,266 - DZA65_RS01435 0.20 +0.6
316,267 + DZA65_RS01435 0.20 -2.0
316,267 + DZA65_RS01435 0.20 +2.2
316,267 + DZA65_RS01435 0.20 +1.6
316,267 + DZA65_RS01435 0.20 +1.3
316,268 - DZA65_RS01435 0.20 -0.6
316,268 - DZA65_RS01435 0.20 -2.0
316,268 - DZA65_RS01435 0.20 -2.0
316,268 - DZA65_RS01435 0.20 +0.2

Or see this region's nucleotide sequence