Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22775 and DZA65_RS01340 are separated by 186 nucleotides DZA65_RS01340 and DZA65_RS01345 overlap by 8 nucleotides DZA65_RS01345 and DZA65_RS01350 are separated by 138 nucleotides DZA65_RS01350 and DZA65_RS01355 are separated by 23 nucleotides
DZA65_RS22775: DZA65_RS22775 - hypothetical protein, at 297,459 to 297,644
_RS22775
DZA65_RS01340: DZA65_RS01340 - host cell division inhibitor Icd-like protein, at 297,831 to 298,019
_RS01340
DZA65_RS01345: DZA65_RS01345 - hypothetical protein, at 298,012 to 298,203
_RS01345
DZA65_RS01350: DZA65_RS01350 - DNA-binding transcriptional regulator Fis, at 298,342 to 298,638
_RS01350
DZA65_RS01355: DZA65_RS01355 - tRNA dihydrouridine synthase DusB, at 298,662 to 299,627
_RS01355
Position (kb) 298
299 Strain fitness (log2 ratio) -2
-1
0
1
2 at 297.357 kb on + strand at 297.357 kb on + strand at 297.358 kb on - strand at 297.358 kb on - strand at 297.384 kb on + strand at 297.384 kb on + strand at 297.384 kb on + strand at 297.384 kb on + strand at 297.418 kb on + strand at 297.419 kb on - strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.426 kb on - strand at 297.426 kb on - strand at 297.432 kb on + strand at 297.439 kb on + strand at 297.439 kb on + strand at 297.439 kb on + strand at 297.439 kb on + strand at 297.440 kb on - strand at 297.467 kb on + strand at 297.467 kb on + strand at 297.479 kb on + strand, within DZA65_RS22775 at 297.479 kb on + strand, within DZA65_RS22775 at 297.488 kb on + strand, within DZA65_RS22775 at 297.488 kb on + strand, within DZA65_RS22775 at 297.606 kb on + strand, within DZA65_RS22775 at 297.660 kb on + strand at 297.660 kb on + strand at 297.663 kb on + strand at 297.663 kb on + strand at 297.664 kb on - strand at 297.664 kb on - strand at 297.678 kb on - strand at 297.679 kb on + strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.730 kb on - strand at 297.803 kb on + strand at 297.815 kb on + strand at 297.815 kb on + strand at 297.816 kb on - strand at 297.816 kb on - strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.831 kb on - strand at 297.831 kb on - strand at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.920 kb on + strand at 297.920 kb on + strand, within DZA65_RS01340 at 297.920 kb on + strand, within DZA65_RS01340 at 297.920 kb on + strand, within DZA65_RS01340 at 297.927 kb on - strand, within DZA65_RS01340 at 298.031 kb on + strand at 298.032 kb on - strand, within DZA65_RS01345 at 298.072 kb on + strand, within DZA65_RS01345 at 298.072 kb on + strand, within DZA65_RS01345 at 298.115 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.144 kb on - strand, within DZA65_RS01345 at 298.262 kb on + strand at 298.262 kb on + strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.267 kb on + strand at 298.268 kb on - strand at 298.341 kb on - strand at 298.341 kb on - strand at 298.487 kb on + strand, within DZA65_RS01350 at 298.487 kb on + strand, within DZA65_RS01350 at 298.487 kb on + strand, within DZA65_RS01350 at 298.488 kb on - strand, within DZA65_RS01350 at 298.488 kb on - strand, within DZA65_RS01350 at 298.638 kb on + strand at 298.638 kb on + strand at 298.639 kb on - strand at 298.663 kb on + strand at 298.720 kb on - strand at 298.720 kb on - strand at 298.771 kb on + strand, within DZA65_RS01355 at 298.787 kb on + strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.797 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.839 kb on + strand, within DZA65_RS01355 at 298.840 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.909 kb on + strand, within DZA65_RS01355 at 298.909 kb on + strand, within DZA65_RS01355 at 298.910 kb on - strand, within DZA65_RS01355 at 298.910 kb on - strand, within DZA65_RS01355 at 298.984 kb on + strand, within DZA65_RS01355 at 298.985 kb on - strand, within DZA65_RS01355 at 299.019 kb on - strand, within DZA65_RS01355 at 299.061 kb on - strand, within DZA65_RS01355 at 299.061 kb on - strand, within DZA65_RS01355 at 299.061 kb on - strand, within DZA65_RS01355 at 299.072 kb on + strand, within DZA65_RS01355 at 299.073 kb on - strand, within DZA65_RS01355 at 299.081 kb on - strand, within DZA65_RS01355 at 299.180 kb on + strand, within DZA65_RS01355 at 299.180 kb on + strand, within DZA65_RS01355 at 299.181 kb on - strand, within DZA65_RS01355 at 299.181 kb on - strand, within DZA65_RS01355 at 299.181 kb on - strand, within DZA65_RS01355 at 299.221 kb on - strand, within DZA65_RS01355 at 299.233 kb on - strand, within DZA65_RS01355 at 299.233 kb on - strand, within DZA65_RS01355 at 299.447 kb on + strand, within DZA65_RS01355 at 299.448 kb on - strand, within DZA65_RS01355 at 299.448 kb on - strand, within DZA65_RS01355 at 299.451 kb on + strand, within DZA65_RS01355 at 299.451 kb on + strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.452 kb on - strand, within DZA65_RS01355 at 299.628 kb on - strand at 299.628 kb on - strand at 299.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 297,357 + +2.3 297,357 + +0.5 297,358 - +0.8 297,358 - +0.6 297,384 + +0.3 297,384 + +0.3 297,384 + -0.2 297,384 + -0.1 297,418 + +0.5 297,419 - +0.1 297,425 + +0.6 297,425 + -0.0 297,425 + +0.5 297,425 + -1.3 297,425 + -0.3 297,426 - -0.5 297,426 - +0.0 297,432 + -1.1 297,439 + -0.4 297,439 + +0.0 297,439 + -0.2 297,439 + +0.6 297,440 - +1.2 297,467 + +0.2 297,467 + +0.8 297,479 + DZA65_RS22775 0.11 +0.3 297,479 + DZA65_RS22775 0.11 -0.8 297,488 + DZA65_RS22775 0.16 +1.4 297,488 + DZA65_RS22775 0.16 -0.9 297,606 + DZA65_RS22775 0.79 -0.6 297,660 + +0.4 297,660 + -0.8 297,663 + +0.0 297,663 + +0.4 297,664 - +0.0 297,664 - -1.0 297,678 - -0.9 297,679 + -0.5 297,680 - -0.4 297,680 - -0.7 297,680 - -1.8 297,730 - -1.4 297,803 + -0.0 297,815 + +1.8 297,815 + -0.5 297,816 - -0.2 297,816 - +0.6 297,824 + -2.4 297,824 + +1.3 297,824 + +0.2 297,824 + +0.2 297,824 + +1.4 297,824 + -0.1 297,824 + -1.1 297,824 + -0.3 297,825 - -1.3 297,825 - +0.2 297,825 - -0.1 297,825 - +1.0 297,825 - +0.4 297,831 - -0.2 297,831 - +0.6 297,917 + DZA65_RS01340 0.46 +0.5 297,917 + DZA65_RS01340 0.46 +0.4 297,917 + DZA65_RS01340 0.46 -0.2 297,917 + DZA65_RS01340 0.46 +0.5 297,917 + DZA65_RS01340 0.46 -2.1 297,917 + DZA65_RS01340 0.46 +0.4 297,917 + DZA65_RS01340 0.46 +1.0 297,917 + DZA65_RS01340 0.46 +1.2 297,917 + DZA65_RS01340 0.46 +0.6 297,917 + DZA65_RS01340 0.46 -0.0 297,917 + DZA65_RS01340 0.46 +0.2 297,918 - DZA65_RS01340 0.46 +0.6 297,918 - DZA65_RS01340 0.46 -0.0 297,918 - DZA65_RS01340 0.46 +1.1 297,918 - DZA65_RS01340 0.46 +0.0 297,918 - DZA65_RS01340 0.46 -1.7 297,918 - DZA65_RS01340 0.46 -0.2 297,918 - DZA65_RS01340 0.46 -0.0 297,920 + -0.4 297,920 + DZA65_RS01340 0.47 +0.0 297,920 + DZA65_RS01340 0.47 -0.1 297,920 + DZA65_RS01340 0.47 -0.6 297,927 - DZA65_RS01340 0.51 +0.6 298,031 + +0.3 298,032 - DZA65_RS01345 0.10 -0.5 298,072 + DZA65_RS01345 0.31 +0.2 298,072 + DZA65_RS01345 0.31 +0.2 298,115 + DZA65_RS01345 0.54 -1.4 298,139 + DZA65_RS01345 0.66 +0.1 298,139 + DZA65_RS01345 0.66 -0.4 298,139 + DZA65_RS01345 0.66 -0.8 298,140 - DZA65_RS01345 0.67 -1.1 298,140 - DZA65_RS01345 0.67 -0.3 298,140 - DZA65_RS01345 0.67 +0.1 298,143 + DZA65_RS01345 0.68 -1.0 298,143 + DZA65_RS01345 0.68 -0.4 298,143 + DZA65_RS01345 0.68 +0.1 298,144 - DZA65_RS01345 0.69 -1.6 298,262 + +0.1 298,262 + -0.6 298,263 - -0.3 298,263 - +0.8 298,263 - -0.5 298,263 - -0.4 298,263 - -0.3 298,267 + -0.9 298,268 - +0.5 298,341 - -2.1 298,341 - -0.6 298,487 + DZA65_RS01350 0.49 -2.6 298,487 + DZA65_RS01350 0.49 -1.6 298,487 + DZA65_RS01350 0.49 -0.8 298,488 - DZA65_RS01350 0.49 +0.6 298,488 - DZA65_RS01350 0.49 -0.7 298,638 + -1.2 298,638 + -1.2 298,639 - -0.4 298,663 + -0.4 298,720 - +0.6 298,720 - -0.8 298,771 + DZA65_RS01355 0.11 -0.4 298,787 + DZA65_RS01355 0.13 +0.4 298,788 - DZA65_RS01355 0.13 +0.4 298,788 - DZA65_RS01355 0.13 -0.0 298,788 - DZA65_RS01355 0.13 -0.3 298,788 - DZA65_RS01355 0.13 +0.2 298,788 - DZA65_RS01355 0.13 +0.6 298,788 - DZA65_RS01355 0.13 +0.8 298,788 - DZA65_RS01355 0.13 +0.1 298,788 - DZA65_RS01355 0.13 -0.0 298,788 - DZA65_RS01355 0.13 +1.0 298,797 - DZA65_RS01355 0.14 +0.9 298,820 - DZA65_RS01355 0.16 -0.3 298,820 - DZA65_RS01355 0.16 -0.3 298,820 - DZA65_RS01355 0.16 -0.9 298,839 + DZA65_RS01355 0.18 -0.6 298,840 - DZA65_RS01355 0.18 -0.6 298,842 - DZA65_RS01355 0.19 +0.4 298,842 - DZA65_RS01355 0.19 -0.8 298,842 - DZA65_RS01355 0.19 +1.4 298,909 + DZA65_RS01355 0.26 -0.0 298,909 + DZA65_RS01355 0.26 -1.9 298,910 - DZA65_RS01355 0.26 +0.6 298,910 - DZA65_RS01355 0.26 +0.3 298,984 + DZA65_RS01355 0.33 +0.9 298,985 - DZA65_RS01355 0.33 +0.9 299,019 - DZA65_RS01355 0.37 -0.1 299,061 - DZA65_RS01355 0.41 +0.8 299,061 - DZA65_RS01355 0.41 -0.8 299,061 - DZA65_RS01355 0.41 +0.3 299,072 + DZA65_RS01355 0.42 +0.6 299,073 - DZA65_RS01355 0.43 +0.1 299,081 - DZA65_RS01355 0.43 +0.0 299,180 + DZA65_RS01355 0.54 +1.2 299,180 + DZA65_RS01355 0.54 -0.4 299,181 - DZA65_RS01355 0.54 +0.2 299,181 - DZA65_RS01355 0.54 +0.9 299,181 - DZA65_RS01355 0.54 +0.3 299,221 - DZA65_RS01355 0.58 -2.2 299,233 - DZA65_RS01355 0.59 -0.1 299,233 - DZA65_RS01355 0.59 +0.1 299,447 + DZA65_RS01355 0.81 -1.0 299,448 - DZA65_RS01355 0.81 +0.2 299,448 - DZA65_RS01355 0.81 -1.1 299,451 + DZA65_RS01355 0.82 -1.0 299,451 + DZA65_RS01355 0.82 +0.6 299,452 - DZA65_RS01355 0.82 -0.4 299,452 - DZA65_RS01355 0.82 -0.2 299,452 - DZA65_RS01355 0.82 -2.0 299,452 - DZA65_RS01355 0.82 +1.0 299,452 - DZA65_RS01355 0.82 +0.6 299,452 - DZA65_RS01355 0.82 -0.3 299,452 - DZA65_RS01355 0.82 -0.8 299,452 - DZA65_RS01355 0.82 +0.8 299,452 - DZA65_RS01355 0.82 +0.2 299,452 - DZA65_RS01355 0.82 +0.5 299,452 - DZA65_RS01355 0.82 -1.2 299,452 - DZA65_RS01355 0.82 -0.8 299,452 - DZA65_RS01355 0.82 -0.7 299,452 - DZA65_RS01355 0.82 -0.3 299,452 - DZA65_RS01355 0.82 -0.8 299,452 - DZA65_RS01355 0.82 +0.9 299,628 - -0.2 299,628 - -1.0 299,628 - -1.2
Or see this region's nucleotide sequence