Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotides DZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides DZA65_RS01065 and DZA65_RS01070 are separated by 82 nucleotides DZA65_RS01070 and DZA65_RS01075 are separated by 185 nucleotides
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016
_RS01055
DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937
_RS01065
DZA65_RS01070: DZA65_RS01070 - tRNA-Glu, at 242,020 to 242,095
_RS01070
DZA65_RS01075: DZA65_RS01075 - 23S ribosomal RNA, at 242,281 to 245,304
_RS01075
Position (kb)
240
241
242 Strain fitness (log2 ratio)
-2
-1
0
1 at 239.419 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.456 kb on + strand at 239.463 kb on + strand at 239.463 kb on + strand at 239.464 kb on - strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.488 kb on - strand at 240.014 kb on + strand at 240.075 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.105 kb on - strand at 240.105 kb on - strand at 240.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 239,419 + -0.8 239,419 + -2.0 239,419 + +1.0 239,420 - -0.7 239,420 - +0.0 239,420 - -1.7 239,430 + -0.8 239,430 + +0.6 239,430 + -1.2 239,431 - -0.6 239,431 - -1.5 239,431 - -1.4 239,434 + +0.9 239,434 + -0.2 239,435 - -2.2 239,435 - -0.8 239,435 - -0.3 239,456 + +1.3 239,463 + +0.1 239,463 + -0.5 239,464 - +1.3 239,476 + +0.2 239,476 + -0.2 239,476 + -0.1 239,477 - -0.8 239,477 - +0.3 239,477 - -0.2 239,477 - -1.1 239,477 - -1.0 239,487 + -0.4 239,487 + +0.1 239,487 + -0.8 239,488 - -1.8 240,014 + +1.0 240,075 - -1.0 240,103 - +0.2 240,103 - +0.7 240,103 - +0.4 240,103 - -0.6 240,103 - -0.7 240,103 - +0.2 240,103 - +0.7 240,103 - -0.2 240,105 - -0.3 240,105 - -0.6 240,559 + +0.0
Or see this region's nucleotide sequence