Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01040 and DZA65_RS01045 overlap by 1 nucleotides DZA65_RS01045 and DZA65_RS01050 are separated by 41 nucleotides DZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotides DZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides
DZA65_RS01040: DZA65_RS01040 - Xaa-Pro dipeptidase, at 236,020 to 237,351
_RS01040
DZA65_RS01045: DZA65_RS01045 - IMPACT family protein, at 237,351 to 237,965
_RS01045
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016
_RS01055
DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937
_RS01065
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 237.121 kb on + strand, within DZA65_RS01040 at 237.121 kb on + strand, within DZA65_RS01040 at 237.122 kb on - strand, within DZA65_RS01040 at 237.122 kb on - strand, within DZA65_RS01040 at 237.133 kb on - strand, within DZA65_RS01040 at 237.165 kb on + strand, within DZA65_RS01040 at 237.165 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.326 kb on + strand at 237.327 kb on - strand at 237.401 kb on + strand at 237.401 kb on + strand at 237.402 kb on - strand at 237.417 kb on - strand, within DZA65_RS01045 at 237.417 kb on - strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.590 kb on + strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.657 kb on + strand, within DZA65_RS01045 at 237.657 kb on + strand, within DZA65_RS01045 at 237.658 kb on - strand, within DZA65_RS01045 at 237.699 kb on + strand, within DZA65_RS01045 at 237.700 kb on - strand, within DZA65_RS01045 at 237.700 kb on - strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.850 kb on - strand, within DZA65_RS01045 at 237.923 kb on + strand at 237.923 kb on + strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.964 kb on - strand at 237.964 kb on - strand at 237.964 kb on - strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.992 kb on - strand at 237.992 kb on - strand at 237.992 kb on - strand at 238.097 kb on + strand at 238.097 kb on + strand at 238.097 kb on + strand at 238.098 kb on - strand at 238.098 kb on - strand at 238.123 kb on + strand at 238.123 kb on + strand at 238.124 kb on - strand at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.221 kb on + strand, within DZA65_RS01050 at 238.222 kb on - strand, within DZA65_RS01050 at 238.487 kb on + strand, within DZA65_RS01050 at 238.522 kb on + strand, within DZA65_RS01050 at 238.522 kb on + strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.572 kb on - strand, within DZA65_RS01050 at 238.572 kb on - strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.627 kb on - strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.723 kb on + strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.744 kb on - strand, within DZA65_RS01050 at 238.837 kb on + strand, within DZA65_RS01050 at 238.838 kb on - strand, within DZA65_RS01050 at 238.838 kb on - strand, within DZA65_RS01050 at 238.871 kb on - strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.899 kb on - strand at 238.899 kb on - strand, within DZA65_RS01050 at 238.899 kb on - strand, within DZA65_RS01050 at 238.948 kb on + strand, within DZA65_RS01050 at 239.032 kb on + strand, within DZA65_RS01050 at 239.089 kb on - strand, within DZA65_RS01050 at 239.089 kb on - strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.152 kb on + strand, within DZA65_RS01050 at 239.152 kb on + strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.216 kb on + strand, within DZA65_RS01050 at 239.230 kb on + strand, within DZA65_RS01050 at 239.265 kb on + strand, within DZA65_RS01050 at 239.266 kb on - strand, within DZA65_RS01050 at 239.386 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.456 kb on + strand at 239.463 kb on + strand at 239.463 kb on + strand at 239.464 kb on - strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.488 kb on - strand at 240.014 kb on + strand at 240.075 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.105 kb on - strand at 240.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 237,121 + DZA65_RS01040 0.83 +0.1 237,121 + DZA65_RS01040 0.83 -1.2 237,122 - DZA65_RS01040 0.83 +0.9 237,122 - DZA65_RS01040 0.83 -0.6 237,133 - DZA65_RS01040 0.84 +0.2 237,165 + DZA65_RS01040 0.86 -1.2 237,165 + DZA65_RS01040 0.86 -1.3 237,181 + DZA65_RS01040 0.87 +0.2 237,181 + DZA65_RS01040 0.87 +2.0 237,181 + DZA65_RS01040 0.87 -0.4 237,181 + DZA65_RS01040 0.87 -3.2 237,181 + DZA65_RS01040 0.87 +0.3 237,181 + DZA65_RS01040 0.87 +0.6 237,182 - DZA65_RS01040 0.87 +0.6 237,182 - DZA65_RS01040 0.87 +0.2 237,182 - DZA65_RS01040 0.87 +0.0 237,182 - DZA65_RS01040 0.87 +3.0 237,182 - DZA65_RS01040 0.87 -1.0 237,182 - DZA65_RS01040 0.87 +0.4 237,182 - DZA65_RS01040 0.87 +0.1 237,182 - DZA65_RS01040 0.87 -3.1 237,182 - DZA65_RS01040 0.87 -1.7 237,182 - DZA65_RS01040 0.87 +0.4 237,326 + -0.3 237,327 - -0.2 237,401 + +1.0 237,401 + +0.2 237,402 - -0.7 237,417 - DZA65_RS01045 0.11 -0.7 237,417 - DZA65_RS01045 0.11 +1.2 237,516 + DZA65_RS01045 0.27 +1.0 237,516 + DZA65_RS01045 0.27 +1.2 237,516 + DZA65_RS01045 0.27 -0.1 237,516 + DZA65_RS01045 0.27 -1.2 237,516 + DZA65_RS01045 0.27 -0.1 237,516 + DZA65_RS01045 0.27 +1.0 237,516 + DZA65_RS01045 0.27 -0.0 237,516 + DZA65_RS01045 0.27 -1.2 237,517 - DZA65_RS01045 0.27 -0.6 237,517 - DZA65_RS01045 0.27 +0.1 237,517 - DZA65_RS01045 0.27 +0.8 237,517 - DZA65_RS01045 0.27 -0.1 237,517 - DZA65_RS01045 0.27 +0.4 237,517 - DZA65_RS01045 0.27 +0.6 237,517 - DZA65_RS01045 0.27 -1.1 237,590 + DZA65_RS01045 0.39 -0.2 237,591 - DZA65_RS01045 0.39 -0.6 237,591 - DZA65_RS01045 0.39 -0.6 237,591 - DZA65_RS01045 0.39 +0.9 237,649 + DZA65_RS01045 0.48 -0.4 237,649 + DZA65_RS01045 0.48 +0.2 237,649 + DZA65_RS01045 0.48 +0.1 237,649 + DZA65_RS01045 0.48 -0.1 237,650 - DZA65_RS01045 0.49 +0.4 237,650 - DZA65_RS01045 0.49 +0.7 237,650 - DZA65_RS01045 0.49 -0.3 237,650 - DZA65_RS01045 0.49 -0.2 237,650 - DZA65_RS01045 0.49 -0.9 237,650 - DZA65_RS01045 0.49 +0.3 237,650 - DZA65_RS01045 0.49 +0.6 237,654 + DZA65_RS01045 0.49 +1.3 237,654 + DZA65_RS01045 0.49 +0.6 237,654 + DZA65_RS01045 0.49 +1.3 237,654 + DZA65_RS01045 0.49 +0.2 237,655 - DZA65_RS01045 0.49 +0.6 237,655 - DZA65_RS01045 0.49 -1.0 237,655 - DZA65_RS01045 0.49 +1.1 237,657 + DZA65_RS01045 0.50 -1.4 237,657 + DZA65_RS01045 0.50 -1.1 237,658 - DZA65_RS01045 0.50 +2.6 237,699 + DZA65_RS01045 0.57 +0.5 237,700 - DZA65_RS01045 0.57 +0.6 237,700 - DZA65_RS01045 0.57 -0.1 237,783 + DZA65_RS01045 0.70 +0.1 237,783 + DZA65_RS01045 0.70 +0.4 237,783 + DZA65_RS01045 0.70 -0.2 237,783 + DZA65_RS01045 0.70 +0.3 237,783 + DZA65_RS01045 0.70 +0.4 237,849 + DZA65_RS01045 0.81 -0.3 237,849 + DZA65_RS01045 0.81 -2.6 237,849 + DZA65_RS01045 0.81 +0.4 237,850 - DZA65_RS01045 0.81 +0.0 237,923 + +1.0 237,923 + +0.6 237,963 + -1.6 237,963 + +0.6 237,963 + -0.9 237,964 - +0.2 237,964 - -0.0 237,964 - +0.7 237,991 + +0.1 237,991 + +0.3 237,991 + +0.1 237,991 + -0.2 237,991 + -0.1 237,991 + -0.2 237,992 - +0.6 237,992 - +0.6 237,992 - -0.7 238,097 + -0.4 238,097 + +0.0 238,097 + +1.0 238,098 - +0.2 238,098 - +0.1 238,123 + +1.2 238,123 + -2.0 238,124 - -0.7 238,181 - DZA65_RS01050 0.12 -0.9 238,181 - DZA65_RS01050 0.12 -0.9 238,181 - DZA65_RS01050 0.12 +1.0 238,181 - DZA65_RS01050 0.12 -0.4 238,218 + DZA65_RS01050 0.15 -0.8 238,218 + DZA65_RS01050 0.15 -1.0 238,218 + DZA65_RS01050 0.15 -1.1 238,218 + DZA65_RS01050 0.15 -0.9 238,219 - DZA65_RS01050 0.15 -0.6 238,219 - DZA65_RS01050 0.15 -1.0 238,219 - DZA65_RS01050 0.15 -0.7 238,221 + DZA65_RS01050 0.15 +0.2 238,222 - DZA65_RS01050 0.15 -0.4 238,487 + DZA65_RS01050 0.33 -2.4 238,522 + DZA65_RS01050 0.35 -0.8 238,522 + DZA65_RS01050 0.35 -0.5 238,523 - DZA65_RS01050 0.36 +0.9 238,523 - DZA65_RS01050 0.36 -1.0 238,523 - DZA65_RS01050 0.36 -1.4 238,523 - DZA65_RS01050 0.36 -1.2 238,571 + DZA65_RS01050 0.39 +0.6 238,571 + DZA65_RS01050 0.39 -0.8 238,571 + DZA65_RS01050 0.39 -1.0 238,571 + DZA65_RS01050 0.39 -1.2 238,572 - DZA65_RS01050 0.39 +0.6 238,572 - DZA65_RS01050 0.39 -1.7 238,575 + DZA65_RS01050 0.39 -0.2 238,575 + DZA65_RS01050 0.39 -1.0 238,575 + DZA65_RS01050 0.39 +0.6 238,576 - DZA65_RS01050 0.39 -0.5 238,576 - DZA65_RS01050 0.39 -1.0 238,576 - DZA65_RS01050 0.39 -2.0 238,576 - DZA65_RS01050 0.39 -1.1 238,627 - DZA65_RS01050 0.43 +0.6 238,720 + DZA65_RS01050 0.49 -1.9 238,720 + DZA65_RS01050 0.49 +0.3 238,720 + DZA65_RS01050 0.49 +0.6 238,723 + DZA65_RS01050 0.49 +0.6 238,724 - DZA65_RS01050 0.49 -1.0 238,724 - DZA65_RS01050 0.49 -0.4 238,724 - DZA65_RS01050 0.49 -1.7 238,744 - DZA65_RS01050 0.51 -1.7 238,837 + DZA65_RS01050 0.57 -1.0 238,838 - DZA65_RS01050 0.57 -2.6 238,838 - DZA65_RS01050 0.57 -1.2 238,871 - DZA65_RS01050 0.60 -1.5 238,898 + DZA65_RS01050 0.61 -1.2 238,898 + DZA65_RS01050 0.61 +0.0 238,898 + DZA65_RS01050 0.61 -1.1 238,898 + DZA65_RS01050 0.61 +0.2 238,898 + DZA65_RS01050 0.61 +0.9 238,899 - -0.4 238,899 - DZA65_RS01050 0.61 -1.0 238,899 - DZA65_RS01050 0.61 -3.7 238,948 + DZA65_RS01050 0.65 +0.8 239,032 + DZA65_RS01050 0.71 -1.2 239,089 - DZA65_RS01050 0.75 +0.9 239,089 - DZA65_RS01050 0.75 -0.5 239,144 + DZA65_RS01050 0.78 +1.2 239,144 + DZA65_RS01050 0.78 -1.6 239,144 + DZA65_RS01050 0.78 -0.5 239,145 - DZA65_RS01050 0.78 -0.2 239,145 - DZA65_RS01050 0.78 -1.3 239,145 - DZA65_RS01050 0.78 -1.6 239,146 + DZA65_RS01050 0.78 -0.9 239,146 + DZA65_RS01050 0.78 +0.2 239,146 + DZA65_RS01050 0.78 -0.5 239,147 - DZA65_RS01050 0.79 -0.2 239,147 - DZA65_RS01050 0.79 -0.6 239,147 - DZA65_RS01050 0.79 -0.4 239,152 + DZA65_RS01050 0.79 -0.2 239,152 + DZA65_RS01050 0.79 +1.4 239,153 - DZA65_RS01050 0.79 +3.2 239,153 - DZA65_RS01050 0.79 -1.6 239,153 - DZA65_RS01050 0.79 -1.4 239,216 + DZA65_RS01050 0.83 -0.3 239,230 + DZA65_RS01050 0.84 +0.4 239,265 + DZA65_RS01050 0.87 +0.6 239,266 - DZA65_RS01050 0.87 +0.3 239,386 + -1.0 239,419 + -0.8 239,419 + -2.0 239,419 + +1.0 239,420 - -0.7 239,420 - +0.0 239,420 - -1.7 239,430 + -0.8 239,430 + +0.6 239,430 + -1.2 239,431 - -0.6 239,431 - -1.5 239,431 - -1.4 239,434 + +0.9 239,434 + -0.2 239,435 - -2.2 239,435 - -0.8 239,435 - -0.3 239,456 + +1.3 239,463 + +0.1 239,463 + -0.5 239,464 - +1.3 239,476 + +0.2 239,476 + -0.2 239,476 + -0.1 239,477 - -0.8 239,477 - +0.3 239,477 - -0.2 239,477 - -1.1 239,477 - -1.0 239,487 + -0.4 239,487 + +0.1 239,487 + -0.8 239,488 - -1.8 240,014 + +1.0 240,075 - -1.0 240,103 - +0.2 240,103 - +0.7 240,103 - +0.4 240,103 - -0.6 240,103 - -0.7 240,103 - +0.2 240,103 - +0.7 240,103 - -0.2 240,105 - -0.3 240,105 - -0.6
Or see this region's nucleotide sequence