Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00875 and DZA65_RS00880 are separated by 189 nucleotides DZA65_RS00880 and DZA65_RS00885 are separated by 289 nucleotides
DZA65_RS00875: DZA65_RS00875 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 194,682 to 196,952
_RS00875
DZA65_RS00880: DZA65_RS00880 - dienelactone hydrolase family protein, at 197,142 to 197,969
_RS00880
DZA65_RS00885: DZA65_RS00885 - uridine phosphorylase, at 198,259 to 199,020
_RS00885
Position (kb) 197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.142 kb on + strand, within DZA65_RS00875 at 196.142 kb on + strand, within DZA65_RS00875 at 196.158 kb on + strand, within DZA65_RS00875 at 196.158 kb on + strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.215 kb on + strand, within DZA65_RS00875 at 196.215 kb on + strand, within DZA65_RS00875 at 196.216 kb on - strand, within DZA65_RS00875 at 196.231 kb on + strand, within DZA65_RS00875 at 196.231 kb on + strand, within DZA65_RS00875 at 196.231 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.531 kb on - strand, within DZA65_RS00875 at 196.611 kb on + strand, within DZA65_RS00875 at 196.612 kb on - strand, within DZA65_RS00875 at 196.752 kb on + strand at 196.753 kb on - strand at 196.783 kb on + strand at 196.783 kb on + strand at 196.784 kb on - strand at 196.784 kb on - strand at 196.784 kb on - strand at 196.823 kb on + strand at 196.824 kb on - strand at 196.824 kb on - strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.947 kb on - strand at 196.947 kb on - strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.953 kb on + strand at 196.953 kb on + strand at 196.953 kb on + strand at 196.953 kb on + strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.959 kb on - strand at 196.959 kb on - strand at 196.971 kb on - strand at 196.982 kb on + strand at 196.983 kb on - strand at 196.983 kb on - strand at 197.036 kb on + strand at 197.037 kb on - strand at 197.074 kb on + strand at 197.089 kb on + strand at 197.090 kb on - strand at 197.104 kb on + strand at 197.104 kb on + strand at 197.105 kb on - strand at 197.143 kb on + strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.257 kb on + strand, within DZA65_RS00880 at 197.482 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.647 kb on + strand, within DZA65_RS00880 at 197.648 kb on - strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.675 kb on - strand, within DZA65_RS00880 at 197.691 kb on - strand, within DZA65_RS00880 at 197.698 kb on + strand, within DZA65_RS00880 at 197.699 kb on - strand, within DZA65_RS00880 at 197.708 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.764 kb on - strand, within DZA65_RS00880 at 197.814 kb on - strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.953 kb on - strand at 197.982 kb on - strand at 197.982 kb on - strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.047 kb on - strand at 198.051 kb on + strand at 198.052 kb on - strand at 198.052 kb on - strand at 198.106 kb on + strand at 198.117 kb on + strand at 198.118 kb on - strand at 198.154 kb on + strand at 198.158 kb on + strand at 198.158 kb on + strand at 198.169 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.219 kb on - strand at 198.231 kb on + strand at 198.231 kb on + strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.269 kb on + strand at 198.269 kb on + strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.439 kb on - strand, within DZA65_RS00885 at 198.471 kb on + strand, within DZA65_RS00885 at 198.472 kb on - strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.732 kb on + strand, within DZA65_RS00885 at 198.758 kb on - strand, within DZA65_RS00885 at 198.758 kb on - strand at 198.766 kb on + strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.802 kb on - strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.943 kb on - strand, within DZA65_RS00885 at 198.948 kb on + strand at 198.948 kb on + strand at 198.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 196,142 + DZA65_RS00875 0.64 -2.0 196,142 + DZA65_RS00875 0.64 -0.5 196,158 + DZA65_RS00875 0.65 +0.2 196,158 + DZA65_RS00875 0.65 +0.2 196,159 - DZA65_RS00875 0.65 -0.4 196,159 - DZA65_RS00875 0.65 +1.2 196,159 - DZA65_RS00875 0.65 -1.1 196,159 - DZA65_RS00875 0.65 +0.9 196,215 + DZA65_RS00875 0.68 +2.8 196,215 + DZA65_RS00875 0.68 +0.4 196,216 - DZA65_RS00875 0.68 +1.5 196,231 + DZA65_RS00875 0.68 +1.3 196,231 + DZA65_RS00875 0.68 -0.9 196,231 + DZA65_RS00875 0.68 -1.0 196,296 + DZA65_RS00875 0.71 -0.1 196,296 + DZA65_RS00875 0.71 -0.2 196,296 + +2.2 196,296 + DZA65_RS00875 0.71 +0.1 196,296 + DZA65_RS00875 0.71 +0.1 196,296 + DZA65_RS00875 0.71 -1.0 196,297 - DZA65_RS00875 0.71 -0.6 196,297 - DZA65_RS00875 0.71 -0.0 196,297 - DZA65_RS00875 0.71 -0.1 196,297 - DZA65_RS00875 0.71 -0.2 196,297 - DZA65_RS00875 0.71 -1.0 196,297 - DZA65_RS00875 0.71 -0.1 196,297 - DZA65_RS00875 0.71 +0.6 196,531 - DZA65_RS00875 0.81 -3.1 196,611 + DZA65_RS00875 0.85 -0.1 196,612 - DZA65_RS00875 0.85 +1.7 196,752 + -2.7 196,753 - +0.8 196,783 + -0.6 196,783 + -0.6 196,784 - -1.9 196,784 - +0.1 196,784 - -0.5 196,823 + +0.2 196,824 - +0.5 196,824 - -0.6 196,946 + -2.0 196,946 + +0.6 196,946 + -0.4 196,946 + -0.8 196,946 + +0.4 196,946 + +0.3 196,946 + -2.4 196,946 + +0.1 196,947 - -2.7 196,947 - -0.5 196,950 + -0.7 196,950 + +0.6 196,950 + -0.3 196,950 + -0.3 196,950 + -0.4 196,950 + +1.8 196,950 + -0.6 196,950 + +1.8 196,951 - +0.0 196,951 - -0.1 196,951 - +0.0 196,951 - -0.1 196,951 - +1.4 196,951 - +0.2 196,951 - +0.0 196,951 - +1.0 196,951 - -0.1 196,951 - -1.7 196,951 - +0.3 196,951 - +0.7 196,951 - +0.6 196,953 + -1.4 196,953 + +0.0 196,953 + -0.4 196,953 + -1.7 196,954 - -1.0 196,954 - -1.0 196,954 - -2.2 196,954 - +0.6 196,954 - +0.3 196,954 - -1.4 196,959 - +2.2 196,959 - +0.0 196,971 - +0.6 196,982 + -1.0 196,983 - +0.4 196,983 - -1.1 197,036 + -0.3 197,037 - +0.3 197,074 + -0.7 197,089 + +2.5 197,090 - +0.4 197,104 + +2.6 197,104 + +0.7 197,105 - +1.0 197,143 + +0.4 197,144 - -1.1 197,144 - +0.4 197,144 - -1.0 197,144 - +0.5 197,144 - -0.1 197,177 + -1.6 197,177 + -0.2 197,177 + -0.7 197,177 + +0.6 197,177 + +1.0 197,177 + +0.0 197,178 - -1.0 197,178 - +0.1 197,178 - -0.1 197,178 - +0.9 197,178 - +0.1 197,212 + -0.2 197,212 + +0.4 197,212 + +0.4 197,212 + -0.6 197,212 + +1.2 197,212 + -0.2 197,213 - +1.3 197,213 - +2.0 197,213 - -0.0 197,213 - +1.1 197,213 - -2.7 197,257 + DZA65_RS00880 0.14 +0.6 197,482 + DZA65_RS00880 0.41 +0.3 197,589 + DZA65_RS00880 0.54 -0.6 197,589 + DZA65_RS00880 0.54 +0.6 197,589 + DZA65_RS00880 0.54 -0.4 197,589 + DZA65_RS00880 0.54 -0.3 197,590 - DZA65_RS00880 0.54 -1.2 197,590 - DZA65_RS00880 0.54 +0.6 197,590 - DZA65_RS00880 0.54 -0.1 197,590 - DZA65_RS00880 0.54 +0.0 197,647 + DZA65_RS00880 0.61 +0.6 197,648 - DZA65_RS00880 0.61 +0.2 197,674 + DZA65_RS00880 0.64 -1.8 197,674 + DZA65_RS00880 0.64 -0.9 197,674 + DZA65_RS00880 0.64 +0.9 197,674 + DZA65_RS00880 0.64 +1.5 197,674 + DZA65_RS00880 0.64 -0.8 197,675 - DZA65_RS00880 0.64 +0.1 197,691 - DZA65_RS00880 0.66 +0.4 197,698 + DZA65_RS00880 0.67 -0.4 197,699 - DZA65_RS00880 0.67 -0.5 197,708 + DZA65_RS00880 0.68 -0.2 197,745 + DZA65_RS00880 0.73 +0.0 197,745 + DZA65_RS00880 0.73 -1.7 197,746 - DZA65_RS00880 0.73 +0.2 197,746 - DZA65_RS00880 0.73 +0.4 197,746 - DZA65_RS00880 0.73 -0.2 197,746 - DZA65_RS00880 0.73 +0.9 197,746 - DZA65_RS00880 0.73 +0.0 197,746 - DZA65_RS00880 0.73 -0.3 197,746 - DZA65_RS00880 0.73 +0.2 197,763 + DZA65_RS00880 0.75 -0.1 197,763 + DZA65_RS00880 0.75 +1.4 197,764 - DZA65_RS00880 0.75 +1.2 197,814 - DZA65_RS00880 0.81 -0.7 197,815 + DZA65_RS00880 0.81 +1.7 197,815 + DZA65_RS00880 0.81 +1.2 197,815 + DZA65_RS00880 0.81 +1.6 197,815 + DZA65_RS00880 0.81 +0.2 197,815 + DZA65_RS00880 0.81 +0.0 197,815 + DZA65_RS00880 0.81 -0.1 197,815 + DZA65_RS00880 0.81 -0.5 197,815 + DZA65_RS00880 0.81 -0.2 197,816 - DZA65_RS00880 0.81 -0.1 197,816 - DZA65_RS00880 0.81 -0.1 197,816 - DZA65_RS00880 0.81 -0.7 197,816 - DZA65_RS00880 0.81 -0.8 197,816 - DZA65_RS00880 0.81 -1.0 197,816 - DZA65_RS00880 0.81 +1.6 197,816 - DZA65_RS00880 0.81 +0.7 197,816 - DZA65_RS00880 0.81 +0.3 197,816 - DZA65_RS00880 0.81 +0.7 197,953 - -0.5 197,982 - +0.3 197,982 - +1.3 198,046 + +0.5 198,046 + -0.5 198,046 + -0.7 198,047 - +0.4 198,051 + -0.1 198,052 - +0.2 198,052 - +0.5 198,106 + +1.6 198,117 + -2.1 198,118 - -0.1 198,154 + +0.3 198,158 + +0.6 198,158 + +1.0 198,169 + +0.6 198,218 + +1.2 198,218 + -0.8 198,218 + -1.1 198,219 - -0.7 198,231 + +0.1 198,231 + +0.3 198,232 - +0.4 198,232 - +0.3 198,232 - -0.9 198,258 + +0.2 198,259 - -0.9 198,269 + +0.0 198,269 + -1.0 198,270 - +0.9 198,270 - -0.2 198,270 - +0.8 198,270 - +0.3 198,270 - -0.4 198,270 - +0.0 198,439 - DZA65_RS00885 0.24 -0.0 198,471 + DZA65_RS00885 0.28 -1.0 198,472 - DZA65_RS00885 0.28 -0.4 198,485 + DZA65_RS00885 0.30 +0.1 198,485 + DZA65_RS00885 0.30 -0.6 198,514 - DZA65_RS00885 0.33 -0.1 198,514 - DZA65_RS00885 0.33 +1.2 198,514 - DZA65_RS00885 0.33 -0.4 198,660 + DZA65_RS00885 0.53 +0.2 198,660 + DZA65_RS00885 0.53 +1.4 198,661 - DZA65_RS00885 0.53 +0.4 198,661 - DZA65_RS00885 0.53 +1.1 198,732 + DZA65_RS00885 0.62 -0.5 198,758 - DZA65_RS00885 0.65 +0.2 198,758 - +1.2 198,766 + DZA65_RS00885 0.67 +0.2 198,767 - DZA65_RS00885 0.67 +0.4 198,767 - DZA65_RS00885 0.67 -0.2 198,801 + DZA65_RS00885 0.71 -0.3 198,801 + DZA65_RS00885 0.71 -2.6 198,802 - DZA65_RS00885 0.71 +0.4 198,835 + DZA65_RS00885 0.76 +0.2 198,835 + DZA65_RS00885 0.76 +0.3 198,835 + DZA65_RS00885 0.76 -0.6 198,836 - DZA65_RS00885 0.76 -0.7 198,836 - DZA65_RS00885 0.76 +0.4 198,836 - DZA65_RS00885 0.76 -1.4 198,921 + DZA65_RS00885 0.87 +0.6 198,921 + DZA65_RS00885 0.87 +0.3 198,943 - DZA65_RS00885 0.90 +1.2 198,948 + +1.6 198,948 + +0.8 198,949 - +1.7
Or see this region's nucleotide sequence