Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00800

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00795 and DZA65_RS00800 overlap by 1 nucleotidesDZA65_RS00800 and DZA65_RS00805 are separated by 151 nucleotides DZA65_RS00795: DZA65_RS00795 - glycosyltransferase family 9 protein, at 178,388 to 179,494 _RS00795 DZA65_RS00800: DZA65_RS00800 - O-antigen ligase family protein, at 179,494 to 180,702 _RS00800 DZA65_RS00805: DZA65_RS00805 - glycosyltransferase family 4 protein, at 180,854 to 181,972 _RS00805 Position (kb) 179 180 181Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 178.555 kb on + strand, within DZA65_RS00795at 178.559 kb on + strand, within DZA65_RS00795at 178.559 kb on + strand, within DZA65_RS00795at 178.684 kb on + strand, within DZA65_RS00795at 178.684 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.792 kb on + strand, within DZA65_RS00795at 178.953 kb on + strand, within DZA65_RS00795at 178.954 kb on - strand, within DZA65_RS00795at 179.039 kb on + strand, within DZA65_RS00795at 179.039 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.221 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.299 kb on + strand, within DZA65_RS00795at 179.431 kb on + strandat 179.470 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.479 kb on - strandat 179.492 kb on + strandat 179.493 kb on - strandat 179.499 kb on + strandat 179.499 kb on + strandat 179.526 kb on + strandat 179.545 kb on + strandat 179.545 kb on + strandat 179.545 kb on + strandat 179.698 kb on + strand, within DZA65_RS00800at 179.699 kb on - strand, within DZA65_RS00800at 179.797 kb on - strand, within DZA65_RS00800at 179.962 kb on + strand, within DZA65_RS00800at 179.962 kb on + strand, within DZA65_RS00800at 180.073 kb on + strand, within DZA65_RS00800at 180.073 kb on + strand, within DZA65_RS00800at 180.074 kb on - strand, within DZA65_RS00800at 180.333 kb on - strand, within DZA65_RS00800at 180.426 kb on - strand, within DZA65_RS00800at 180.516 kb on + strand, within DZA65_RS00800at 180.516 kb on + strand, within DZA65_RS00800at 180.666 kb on + strandat 180.673 kb on + strandat 180.674 kb on - strandat 180.674 kb on - strandat 180.696 kb on + strandat 180.696 kb on + strandat 180.696 kb on + strandat 180.697 kb on - strandat 180.735 kb on + strandat 180.762 kb on + strandat 180.763 kb on - strandat 180.779 kb on - strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.811 kb on + strandat 180.811 kb on + strandat 180.811 kb on + strandat 180.822 kb on + strandat 180.823 kb on - strandat 180.823 kb on - strandat 180.823 kb on - strandat 180.823 kb on - strandat 180.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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178,555 + DZA65_RS00795 0.15 -0.1
178,559 + DZA65_RS00795 0.15 +0.6
178,559 + DZA65_RS00795 0.15 -0.8
178,684 + DZA65_RS00795 0.27 -1.4
178,684 + DZA65_RS00795 0.27 -0.6
178,697 + DZA65_RS00795 0.28 +0.8
178,697 + DZA65_RS00795 0.28 -0.5
178,697 + DZA65_RS00795 0.28 -0.8
178,697 + DZA65_RS00795 0.28 +1.0
178,697 + DZA65_RS00795 0.28 +0.0
178,732 + DZA65_RS00795 0.31 +0.7
178,732 + DZA65_RS00795 0.31 +0.4
178,732 + DZA65_RS00795 0.31 +0.0
178,732 + DZA65_RS00795 0.31 -0.2
178,732 + DZA65_RS00795 0.31 +0.3
178,792 + DZA65_RS00795 0.36 -1.2
178,953 + DZA65_RS00795 0.51 +0.2
178,954 - DZA65_RS00795 0.51 -2.9
179,039 + DZA65_RS00795 0.59 -1.0
179,039 + DZA65_RS00795 0.59 -0.6
179,077 + DZA65_RS00795 0.62 -2.2
179,077 + DZA65_RS00795 0.62 +1.3
179,077 + DZA65_RS00795 0.62 -1.5
179,077 + DZA65_RS00795 0.62 -0.4
179,176 + DZA65_RS00795 0.71 -0.4
179,176 + DZA65_RS00795 0.71 -0.4
179,176 + DZA65_RS00795 0.71 -0.3
179,221 + DZA65_RS00795 0.75 +0.0
179,240 + DZA65_RS00795 0.77 +0.3
179,240 + DZA65_RS00795 0.77 +0.2
179,240 + DZA65_RS00795 0.77 +0.6
179,240 + DZA65_RS00795 0.77 +0.7
179,240 + DZA65_RS00795 0.77 -0.1
179,299 + DZA65_RS00795 0.82 -0.3
179,431 + +1.4
179,470 + +1.5
179,478 + +0.6
179,478 + +0.3
179,478 + -0.5
179,478 + +0.3
179,478 + -0.5
179,478 + -1.5
179,478 + -0.9
179,478 + -0.1
179,479 - -0.6
179,492 + -0.4
179,493 - +0.0
179,499 + +0.6
179,499 + -1.0
179,526 + -0.5
179,545 + -0.2
179,545 + +0.4
179,545 + -0.2
179,698 + DZA65_RS00800 0.17 -3.3
179,699 - DZA65_RS00800 0.17 -2.5
179,797 - DZA65_RS00800 0.25 -0.9
179,962 + DZA65_RS00800 0.39 -2.7
179,962 + DZA65_RS00800 0.39 +0.6
180,073 + DZA65_RS00800 0.48 -1.4
180,073 + DZA65_RS00800 0.48 -0.2
180,074 - DZA65_RS00800 0.48 -1.8
180,333 - DZA65_RS00800 0.69 -2.2
180,426 - DZA65_RS00800 0.77 -1.2
180,516 + DZA65_RS00800 0.85 -4.0
180,516 + DZA65_RS00800 0.85 -2.5
180,666 + +0.2
180,673 + +0.4
180,674 - -0.1
180,674 - +0.6
180,696 + +0.1
180,696 + +0.4
180,696 + +1.2
180,697 - -1.3
180,735 + -0.3
180,762 + -1.1
180,763 - +1.0
180,779 - +1.2
180,806 + +0.6
180,806 + -1.0
180,806 + -0.5
180,806 + -0.9
180,806 + +0.4
180,806 + +1.2
180,806 + +0.3
180,806 + -1.6
180,806 + -0.4
180,806 + -1.2
180,806 + -0.4
180,806 + -0.5
180,806 + +0.4
180,806 + -0.7
180,807 - -1.3
180,807 - -0.5
180,807 - +0.2
180,807 - +0.4
180,807 - -0.7
180,807 - +0.3
180,811 + +0.4
180,811 + +0.0
180,811 + +0.3
180,822 + +0.9
180,823 - +0.7
180,823 - +0.6
180,823 - +0.2
180,823 - +0.2
180,823 - -3.2

Or see this region's nucleotide sequence