Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00715 and DZA65_RS00720 are separated by 248 nucleotides DZA65_RS00720 and DZA65_RS00725 are separated by 6 nucleotides DZA65_RS00725 and DZA65_RS00730 are separated by 178 nucleotides
DZA65_RS00715: DZA65_RS00715 - DUF1611 domain-containing protein, at 165,606 to 166,613
_RS00715
DZA65_RS00720: DZA65_RS00720 - DUF202 domain-containing protein, at 166,862 to 167,194
_RS00720
DZA65_RS00725: DZA65_RS00725 - DUF202 domain-containing protein, at 167,201 to 167,593
_RS00725
DZA65_RS00730: DZA65_RS00730 - ribonuclease PH, at 167,772 to 168,488
_RS00730
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 166.263 kb on + strand, within DZA65_RS00715 at 166.263 kb on + strand, within DZA65_RS00715 at 166.264 kb on - strand, within DZA65_RS00715 at 166.264 kb on - strand, within DZA65_RS00715 at 166.427 kb on + strand, within DZA65_RS00715 at 166.455 kb on - strand, within DZA65_RS00715 at 166.594 kb on + strand at 166.594 kb on + strand at 166.594 kb on + strand at 166.594 kb on + strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.621 kb on + strand at 166.645 kb on + strand at 166.653 kb on + strand at 166.653 kb on + strand at 166.653 kb on + strand at 166.654 kb on - strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.663 kb on + strand at 166.664 kb on - strand at 166.664 kb on - strand at 166.664 kb on - strand at 166.664 kb on - strand at 166.699 kb on + strand at 166.711 kb on - strand at 166.711 kb on - strand at 166.711 kb on - strand at 166.711 kb on - strand at 166.724 kb on - strand at 166.724 kb on - strand at 166.724 kb on - strand at 166.725 kb on + strand at 166.725 kb on + strand at 166.725 kb on + strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.776 kb on + strand at 166.831 kb on + strand at 166.831 kb on + strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.840 kb on + strand at 166.841 kb on - strand at 166.892 kb on + strand at 166.892 kb on + strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.905 kb on - strand, within DZA65_RS00720 at 166.952 kb on - strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.091 kb on - strand, within DZA65_RS00720 at 167.091 kb on - strand, within DZA65_RS00720 at 167.098 kb on + strand, within DZA65_RS00720 at 167.153 kb on + strand, within DZA65_RS00720 at 167.177 kb on - strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.203 kb on - strand at 167.263 kb on + strand, within DZA65_RS00725 at 167.264 kb on - strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.691 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.733 kb on - strand at 167.733 kb on - strand at 167.747 kb on + strand at 167.748 kb on - strand at 167.873 kb on + strand, within DZA65_RS00730 at 167.958 kb on + strand, within DZA65_RS00730 at 167.958 kb on + strand, within DZA65_RS00730 at 167.959 kb on - strand at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.964 kb on - strand, within DZA65_RS00730 at 168.099 kb on + strand at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.107 kb on + strand, within DZA65_RS00730 at 168.108 kb on - strand, within DZA65_RS00730 at 168.108 kb on - strand, within DZA65_RS00730 at 168.195 kb on - strand, within DZA65_RS00730 at 168.195 kb on - strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.486 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.524 kb on + strand at 168.538 kb on + strand at 168.539 kb on - strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 166,263 + DZA65_RS00715 0.65 -1.7 166,263 + DZA65_RS00715 0.65 +0.5 166,264 - DZA65_RS00715 0.65 +0.4 166,264 - DZA65_RS00715 0.65 +0.8 166,427 + DZA65_RS00715 0.81 +0.7 166,455 - DZA65_RS00715 0.84 -0.3 166,594 + -0.3 166,594 + +0.5 166,594 + -0.2 166,594 + -0.1 166,595 - -3.0 166,595 - +0.9 166,595 - +0.7 166,595 - +0.7 166,595 - -0.3 166,621 + +1.0 166,645 + +0.0 166,653 + -0.1 166,653 + +1.4 166,653 + -1.6 166,654 - -0.5 166,657 + -0.1 166,657 + -0.1 166,657 + +1.0 166,657 + -1.6 166,657 + -1.1 166,657 + -0.0 166,657 + -1.7 166,657 + -0.2 166,657 + -1.2 166,657 + -0.7 166,657 + +1.6 166,657 + +0.9 166,657 + -0.1 166,657 + +0.3 166,657 + +0.1 166,657 + +0.8 166,657 + -1.5 166,657 + -0.2 166,657 + -0.1 166,657 + +0.1 166,657 + +0.9 166,657 + -0.2 166,657 + -0.5 166,657 + -0.5 166,658 - -2.0 166,658 - -0.5 166,658 - +0.0 166,658 - +0.2 166,658 - +0.6 166,658 - -1.5 166,658 - +0.6 166,658 - -0.4 166,658 - -0.4 166,658 - +0.6 166,658 - -0.8 166,658 - +0.6 166,658 - +0.2 166,658 - -0.7 166,658 - +0.2 166,658 - +0.2 166,658 - -0.4 166,658 - +0.2 166,658 - -1.0 166,658 - +0.4 166,658 - +0.0 166,663 + -0.5 166,664 - +0.1 166,664 - -0.4 166,664 - -0.2 166,664 - -1.4 166,699 + +0.6 166,711 - -0.5 166,711 - -1.7 166,711 - +0.1 166,711 - +0.5 166,724 - -0.1 166,724 - +0.6 166,724 - -0.1 166,725 + -0.1 166,725 + +0.2 166,725 + -0.6 166,726 - -1.8 166,726 - +0.5 166,726 - -1.3 166,726 - -1.7 166,776 + +0.1 166,831 + -0.0 166,831 + -0.9 166,832 - +1.8 166,832 - -0.2 166,832 - -1.4 166,832 - +0.6 166,832 - +0.6 166,840 + +0.3 166,841 - +0.4 166,892 + +0.9 166,892 + -0.6 166,893 - +1.8 166,893 - +0.6 166,893 - +0.1 166,893 - +0.6 166,905 - DZA65_RS00720 0.13 -0.5 166,952 - DZA65_RS00720 0.27 -0.6 167,004 + DZA65_RS00720 0.43 +1.1 167,004 + DZA65_RS00720 0.43 +0.6 167,004 + DZA65_RS00720 0.43 +1.2 167,004 + DZA65_RS00720 0.43 -1.0 167,005 - DZA65_RS00720 0.43 -2.4 167,005 - DZA65_RS00720 0.43 -0.4 167,005 - DZA65_RS00720 0.43 -1.2 167,005 - DZA65_RS00720 0.43 -0.4 167,005 - DZA65_RS00720 0.43 -0.7 167,005 - DZA65_RS00720 0.43 -0.9 167,005 - DZA65_RS00720 0.43 +0.6 167,005 - DZA65_RS00720 0.43 +0.2 167,090 + DZA65_RS00720 0.68 +0.6 167,090 + DZA65_RS00720 0.68 +1.6 167,090 + DZA65_RS00720 0.68 +1.2 167,090 + DZA65_RS00720 0.68 +0.6 167,090 + DZA65_RS00720 0.68 +0.3 167,090 + DZA65_RS00720 0.68 +0.6 167,091 - DZA65_RS00720 0.69 +0.0 167,091 - DZA65_RS00720 0.69 +0.9 167,098 + DZA65_RS00720 0.71 -0.3 167,153 + DZA65_RS00720 0.87 +0.2 167,177 - -1.3 167,202 + -1.3 167,202 + +0.3 167,203 - +0.1 167,263 + DZA65_RS00725 0.16 +0.6 167,264 - DZA65_RS00725 0.16 +0.1 167,278 + DZA65_RS00725 0.20 -1.7 167,278 + DZA65_RS00725 0.20 +0.9 167,278 + DZA65_RS00725 0.20 +0.6 167,280 + DZA65_RS00725 0.20 +0.3 167,280 + DZA65_RS00725 0.20 -1.0 167,280 + DZA65_RS00725 0.20 -0.2 167,280 + DZA65_RS00725 0.20 -1.1 167,280 + DZA65_RS00725 0.20 -1.9 167,281 - DZA65_RS00725 0.20 -0.3 167,281 - DZA65_RS00725 0.20 -1.7 167,281 - DZA65_RS00725 0.20 -1.6 167,281 - DZA65_RS00725 0.20 +0.3 167,281 - DZA65_RS00725 0.20 -1.1 167,281 - DZA65_RS00725 0.20 +0.5 167,281 - DZA65_RS00725 0.20 -1.7 167,281 - DZA65_RS00725 0.20 +0.4 167,281 - DZA65_RS00725 0.20 -1.0 167,626 + +0.4 167,626 + -1.1 167,626 + +0.1 167,626 + -1.4 167,626 + +1.1 167,626 + +0.1 167,627 - -0.1 167,627 - -0.5 167,627 - +1.1 167,627 - -0.4 167,627 - +1.2 167,627 - +1.7 167,627 - +0.0 167,627 - -0.0 167,627 - -0.2 167,627 - +0.3 167,691 + -1.0 167,730 + +0.4 167,730 + +0.0 167,730 + -0.6 167,730 + -0.1 167,730 + +0.7 167,730 + +0.1 167,730 + -1.2 167,730 + +0.9 167,731 - +1.0 167,731 - -0.1 167,731 - -1.1 167,731 - +0.3 167,731 - -0.1 167,731 - +1.4 167,731 - +0.5 167,731 - +0.2 167,732 + +0.6 167,732 + +0.2 167,732 + -0.5 167,732 + -0.2 167,732 + +0.2 167,732 + +0.3 167,732 + -0.4 167,732 + +0.1 167,732 + -1.8 167,733 - +0.0 167,733 - +0.1 167,747 + +0.1 167,748 - -0.7 167,873 + DZA65_RS00730 0.14 -0.4 167,958 + DZA65_RS00730 0.26 -0.3 167,958 + DZA65_RS00730 0.26 +0.3 167,959 - -0.1 167,963 + DZA65_RS00730 0.27 -0.1 167,963 + DZA65_RS00730 0.27 +0.5 167,963 + DZA65_RS00730 0.27 -1.0 167,963 + DZA65_RS00730 0.27 -0.7 167,964 - DZA65_RS00730 0.27 -0.9 168,099 + -0.4 168,099 + DZA65_RS00730 0.46 -0.1 168,099 + DZA65_RS00730 0.46 +0.4 168,099 + DZA65_RS00730 0.46 -0.1 168,099 + DZA65_RS00730 0.46 +0.9 168,099 + DZA65_RS00730 0.46 -0.5 168,099 + DZA65_RS00730 0.46 -1.4 168,099 + DZA65_RS00730 0.46 +0.7 168,099 + DZA65_RS00730 0.46 -0.3 168,099 + DZA65_RS00730 0.46 +0.0 168,099 + DZA65_RS00730 0.46 +0.3 168,100 - DZA65_RS00730 0.46 -1.3 168,100 - DZA65_RS00730 0.46 -1.7 168,100 - DZA65_RS00730 0.46 -0.7 168,100 - DZA65_RS00730 0.46 +0.2 168,100 - DZA65_RS00730 0.46 +0.6 168,100 - DZA65_RS00730 0.46 -2.2 168,107 + DZA65_RS00730 0.47 -1.3 168,108 - DZA65_RS00730 0.47 +0.8 168,108 - DZA65_RS00730 0.47 -0.4 168,195 - DZA65_RS00730 0.59 -1.3 168,195 - DZA65_RS00730 0.59 -0.4 168,300 + DZA65_RS00730 0.74 +1.2 168,300 + DZA65_RS00730 0.74 -1.4 168,300 + DZA65_RS00730 0.74 -1.0 168,300 + DZA65_RS00730 0.74 +0.4 168,300 + DZA65_RS00730 0.74 +0.2 168,300 + DZA65_RS00730 0.74 +0.6 168,301 - DZA65_RS00730 0.74 -0.4 168,301 - DZA65_RS00730 0.74 +0.8 168,486 + +0.3 168,522 + +0.6 168,522 + +0.2 168,522 + -0.5 168,522 + -0.4 168,523 - +0.2 168,523 - -0.1 168,523 - +0.8 168,524 + +0.0 168,538 + -0.2 168,539 - -0.3 168,543 + +0.3 168,543 + -1.1 168,543 + -1.1 168,543 + -1.7 168,543 + -0.7 168,543 + +1.1 168,543 + +0.1 168,543 + +1.0 168,543 + -0.1 168,543 + +0.5 168,543 + -1.5 168,543 + -0.4 168,543 + -2.7 168,543 + +0.2 168,543 + +0.5 168,543 + +2.2 168,543 + -0.4 168,543 + -1.2 168,543 + +1.1 168,543 + -1.0 168,543 + +0.5 168,543 + +0.1 168,543 + -0.4 168,543 + +0.6 168,543 + -0.0 168,544 - +0.8 168,544 - +0.5 168,544 - -0.4 168,544 - -0.2 168,544 - -0.9 168,544 - -0.8 168,544 - +0.9 168,544 - -1.0 168,544 - -0.1 168,544 - +0.7 168,544 - -0.6 168,544 - -0.6 168,544 - -2.0 168,544 - +0.6 168,544 - +0.4 168,544 - -0.8 168,544 - -1.1 168,544 - -1.7 168,544 - +0.4 168,544 - -1.4 168,544 - -1.1 168,544 - -2.2 168,544 - +0.2 168,544 - +0.6 168,544 - -1.1 168,544 - +0.7 168,544 - -0.3 168,544 - -0.7 168,544 - -0.4 168,544 - -0.5 168,586 - +0.7
Or see this region's nucleotide sequence