Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00355 and DZA65_RS00360 are separated by 96 nucleotides DZA65_RS00360 and DZA65_RS00365 are separated by 358 nucleotides
DZA65_RS00355: DZA65_RS00355 - argininosuccinate synthase, at 84,318 to 85,667
_RS00355
DZA65_RS00360: DZA65_RS00360 - MarR family transcriptional regulator, at 85,764 to 86,264
_RS00360
DZA65_RS00365: DZA65_RS00365 - DMT family transporter, at 86,623 to 87,516
_RS00365
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.777 kb on + strand, within DZA65_RS00355 at 84.777 kb on + strand, within DZA65_RS00355 at 84.777 kb on + strand, within DZA65_RS00355 at 84.777 kb on + strand, within DZA65_RS00355 at 84.777 kb on + strand, within DZA65_RS00355 at 84.888 kb on + strand, within DZA65_RS00355 at 84.888 kb on + strand, within DZA65_RS00355 at 84.888 kb on + strand, within DZA65_RS00355 at 84.888 kb on + strand, within DZA65_RS00355 at 84.888 kb on + strand, within DZA65_RS00355 at 84.888 kb on + strand, within DZA65_RS00355 at 84.889 kb on - strand, within DZA65_RS00355 at 84.889 kb on - strand, within DZA65_RS00355 at 84.889 kb on - strand, within DZA65_RS00355 at 84.889 kb on - strand, within DZA65_RS00355 at 84.889 kb on - strand, within DZA65_RS00355 at 84.894 kb on - strand, within DZA65_RS00355 at 84.987 kb on - strand, within DZA65_RS00355 at 84.987 kb on - strand, within DZA65_RS00355 at 85.109 kb on + strand, within DZA65_RS00355 at 85.109 kb on + strand, within DZA65_RS00355 at 85.110 kb on - strand, within DZA65_RS00355 at 85.110 kb on - strand, within DZA65_RS00355 at 85.163 kb on + strand, within DZA65_RS00355 at 85.164 kb on - strand, within DZA65_RS00355 at 85.164 kb on - strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.191 kb on + strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.192 kb on - strand, within DZA65_RS00355 at 85.276 kb on - strand, within DZA65_RS00355 at 85.276 kb on - strand, within DZA65_RS00355 at 85.425 kb on + strand, within DZA65_RS00355 at 85.461 kb on + strand, within DZA65_RS00355 at 85.461 kb on + strand, within DZA65_RS00355 at 85.461 kb on + strand, within DZA65_RS00355 at 85.461 kb on + strand, within DZA65_RS00355 at 85.461 kb on + strand, within DZA65_RS00355 at 85.461 kb on + strand, within DZA65_RS00355 at 85.462 kb on - strand, within DZA65_RS00355 at 85.462 kb on - strand, within DZA65_RS00355 at 85.462 kb on - strand, within DZA65_RS00355 at 85.462 kb on - strand, within DZA65_RS00355 at 85.542 kb on - strand at 85.581 kb on + strand at 85.581 kb on + strand at 85.581 kb on + strand at 85.581 kb on + strand at 85.581 kb on + strand at 85.581 kb on + strand at 85.581 kb on + strand at 85.582 kb on - strand at 85.582 kb on - strand at 85.582 kb on - strand at 85.582 kb on - strand at 85.666 kb on - strand at 85.682 kb on + strand at 85.682 kb on + strand at 85.682 kb on + strand at 85.682 kb on + strand at 85.683 kb on - strand at 85.719 kb on - strand at 85.766 kb on - strand at 86.034 kb on + strand, within DZA65_RS00360 at 86.034 kb on + strand at 86.034 kb on + strand, within DZA65_RS00360 at 86.056 kb on + strand, within DZA65_RS00360 at 86.056 kb on + strand, within DZA65_RS00360 at 86.056 kb on + strand, within DZA65_RS00360 at 86.057 kb on - strand, within DZA65_RS00360 at 86.116 kb on + strand, within DZA65_RS00360 at 86.116 kb on + strand, within DZA65_RS00360 at 86.116 kb on + strand, within DZA65_RS00360 at 86.117 kb on - strand, within DZA65_RS00360 at 86.117 kb on - strand, within DZA65_RS00360 at 86.117 kb on - strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand at 86.128 kb on - strand, within DZA65_RS00360 at 86.128 kb on - strand, within DZA65_RS00360 at 86.128 kb on - strand, within DZA65_RS00360 at 86.128 kb on - strand, within DZA65_RS00360 at 86.237 kb on + strand at 86.238 kb on - strand at 86.245 kb on - strand at 86.283 kb on + strand at 86.289 kb on - strand at 86.307 kb on - strand at 86.324 kb on + strand at 86.344 kb on + strand at 86.345 kb on - strand at 86.349 kb on + strand at 86.349 kb on + strand at 86.350 kb on - strand at 86.352 kb on + strand at 86.353 kb on - strand at 86.427 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.463 kb on - strand at 86.463 kb on - strand at 86.463 kb on - strand at 86.463 kb on - strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.473 kb on - strand at 86.473 kb on - strand at 86.473 kb on - strand at 86.493 kb on + strand at 86.493 kb on + strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.648 kb on - strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.715 kb on - strand, within DZA65_RS00365 at 86.715 kb on - strand, within DZA65_RS00365 at 86.751 kb on + strand, within DZA65_RS00365 at 86.751 kb on + strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.757 kb on + strand, within DZA65_RS00365 at 86.757 kb on + strand, within DZA65_RS00365 at 86.758 kb on - strand, within DZA65_RS00365 at 86.758 kb on - strand, within DZA65_RS00365 at 86.758 kb on - strand, within DZA65_RS00365 at 86.807 kb on + strand, within DZA65_RS00365 at 86.824 kb on - strand, within DZA65_RS00365 at 86.995 kb on - strand, within DZA65_RS00365 at 87.072 kb on + strand, within DZA65_RS00365 at 87.072 kb on + strand, within DZA65_RS00365 at 87.073 kb on - strand, within DZA65_RS00365 at 87.073 kb on - strand, within DZA65_RS00365 at 87.073 kb on - strand, within DZA65_RS00365 at 87.244 kb on + strand, within DZA65_RS00365
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 84,777 + DZA65_RS00355 0.34 +2.2 84,777 + DZA65_RS00355 0.34 +0.1 84,777 + DZA65_RS00355 0.34 +1.4 84,777 + DZA65_RS00355 0.34 -2.6 84,777 + DZA65_RS00355 0.34 +1.1 84,888 + DZA65_RS00355 0.42 +0.6 84,888 + DZA65_RS00355 0.42 -0.3 84,888 + DZA65_RS00355 0.42 -0.7 84,888 + DZA65_RS00355 0.42 -2.0 84,888 + DZA65_RS00355 0.42 +0.0 84,888 + DZA65_RS00355 0.42 -1.4 84,889 - DZA65_RS00355 0.42 +0.4 84,889 - DZA65_RS00355 0.42 +0.4 84,889 - DZA65_RS00355 0.42 +0.6 84,889 - DZA65_RS00355 0.42 +0.6 84,889 - DZA65_RS00355 0.42 -0.4 84,894 - DZA65_RS00355 0.43 -0.0 84,987 - DZA65_RS00355 0.50 -0.0 84,987 - DZA65_RS00355 0.50 +0.3 85,109 + DZA65_RS00355 0.59 -0.8 85,109 + DZA65_RS00355 0.59 +0.3 85,110 - DZA65_RS00355 0.59 +1.0 85,110 - DZA65_RS00355 0.59 -0.2 85,163 + DZA65_RS00355 0.63 -0.1 85,164 - DZA65_RS00355 0.63 -0.2 85,164 - DZA65_RS00355 0.63 +0.2 85,191 + DZA65_RS00355 0.65 +0.5 85,191 + DZA65_RS00355 0.65 +1.6 85,191 + DZA65_RS00355 0.65 -0.1 85,191 + DZA65_RS00355 0.65 -0.4 85,191 + DZA65_RS00355 0.65 -0.2 85,191 + DZA65_RS00355 0.65 +0.8 85,191 + DZA65_RS00355 0.65 -0.5 85,192 - DZA65_RS00355 0.65 -0.4 85,192 - DZA65_RS00355 0.65 -0.7 85,192 - DZA65_RS00355 0.65 -0.3 85,192 - DZA65_RS00355 0.65 +0.1 85,192 - DZA65_RS00355 0.65 -2.9 85,192 - DZA65_RS00355 0.65 -1.1 85,192 - DZA65_RS00355 0.65 +0.9 85,192 - DZA65_RS00355 0.65 -2.0 85,192 - DZA65_RS00355 0.65 -0.1 85,192 - DZA65_RS00355 0.65 -0.1 85,192 - DZA65_RS00355 0.65 +1.2 85,276 - DZA65_RS00355 0.71 +0.6 85,276 - DZA65_RS00355 0.71 -0.5 85,425 + DZA65_RS00355 0.82 -1.3 85,461 + DZA65_RS00355 0.85 +1.2 85,461 + DZA65_RS00355 0.85 +0.5 85,461 + DZA65_RS00355 0.85 +1.7 85,461 + DZA65_RS00355 0.85 +0.2 85,461 + DZA65_RS00355 0.85 +0.7 85,461 + DZA65_RS00355 0.85 -0.8 85,462 - DZA65_RS00355 0.85 +0.3 85,462 - DZA65_RS00355 0.85 +0.1 85,462 - DZA65_RS00355 0.85 -0.1 85,462 - DZA65_RS00355 0.85 -0.3 85,542 - -1.2 85,581 + +0.5 85,581 + -0.4 85,581 + +0.5 85,581 + +1.2 85,581 + +2.2 85,581 + -1.2 85,581 + -0.4 85,582 - +0.1 85,582 - -0.6 85,582 - -1.4 85,582 - +0.4 85,666 - -0.3 85,682 + +0.0 85,682 + +0.8 85,682 + -0.3 85,682 + -2.9 85,683 - -0.9 85,719 - -1.1 85,766 - +0.3 86,034 + DZA65_RS00360 0.54 -1.4 86,034 + -0.4 86,034 + DZA65_RS00360 0.54 -1.1 86,056 + DZA65_RS00360 0.58 +0.2 86,056 + DZA65_RS00360 0.58 +0.0 86,056 + DZA65_RS00360 0.58 -1.0 86,057 - DZA65_RS00360 0.58 -1.2 86,116 + DZA65_RS00360 0.70 -0.7 86,116 + DZA65_RS00360 0.70 -0.5 86,116 + DZA65_RS00360 0.70 -0.6 86,117 - DZA65_RS00360 0.70 -3.4 86,117 - DZA65_RS00360 0.70 -1.7 86,117 - DZA65_RS00360 0.70 -1.3 86,127 + DZA65_RS00360 0.72 -2.0 86,127 + DZA65_RS00360 0.72 -0.2 86,127 + DZA65_RS00360 0.72 +0.0 86,127 + DZA65_RS00360 0.72 -2.9 86,127 + DZA65_RS00360 0.72 -1.0 86,127 + DZA65_RS00360 0.72 +0.0 86,127 + -1.0 86,128 - DZA65_RS00360 0.73 -1.6 86,128 - DZA65_RS00360 0.73 -2.2 86,128 - DZA65_RS00360 0.73 -1.0 86,128 - DZA65_RS00360 0.73 -1.5 86,237 + -1.6 86,238 - +0.4 86,245 - +0.3 86,283 + -2.7 86,289 - -0.9 86,307 - -0.2 86,324 + -0.4 86,344 + -0.8 86,345 - +1.0 86,349 + -1.0 86,349 + -0.1 86,350 - -0.1 86,352 + +0.0 86,353 - -0.8 86,427 + +0.1 86,462 + -1.1 86,462 + +0.1 86,462 + +0.9 86,462 + +0.7 86,462 + -1.0 86,463 - +0.2 86,463 - +1.1 86,463 - +0.2 86,463 - +0.0 86,472 + +1.3 86,472 + +0.7 86,472 + -0.0 86,472 + +0.9 86,472 + -0.9 86,473 - +0.9 86,473 - +0.3 86,473 - +0.2 86,493 + +1.0 86,493 + +0.7 86,494 - +0.1 86,494 - -2.0 86,494 - -1.6 86,494 - +0.9 86,494 - +0.3 86,494 - +1.2 86,648 - -0.2 86,670 + -0.3 86,670 + +0.6 86,670 + +1.4 86,670 + -2.9 86,670 + +0.9 86,670 + -0.4 86,670 + -0.7 86,670 + -0.4 86,670 + +0.2 86,670 + +1.1 86,671 - +0.4 86,671 - +0.6 86,671 - -1.7 86,671 - -1.0 86,671 - -0.2 86,671 - -1.0 86,671 - +0.5 86,671 - +0.0 86,671 - -1.4 86,671 - +1.3 86,671 - +0.8 86,671 - +0.1 86,671 - -0.6 86,671 - +2.2 86,671 - -0.8 86,671 - +0.1 86,674 + +0.5 86,674 + -2.7 86,674 + -0.3 86,674 + +1.4 86,674 + -0.3 86,674 + -0.9 86,674 + +0.1 86,674 + -1.3 86,674 + -0.1 86,674 + +0.2 86,674 + -0.7 86,674 + -0.7 86,674 + +1.1 86,674 + +0.5 86,674 + -0.5 86,674 + +0.1 86,674 + +0.8 86,674 + +0.0 86,674 + -3.0 86,675 - -0.4 86,675 - -0.7 86,675 - +0.0 86,675 - +1.6 86,675 - +0.3 86,675 - +0.2 86,675 - -1.5 86,675 - +0.4 86,675 - -2.2 86,675 - +0.6 86,675 - +0.2 86,675 - -1.1 86,675 - -2.4 86,675 - +0.6 86,715 - DZA65_RS00365 0.10 -0.2 86,715 - DZA65_RS00365 0.10 +0.4 86,751 + DZA65_RS00365 0.14 -1.7 86,751 + DZA65_RS00365 0.14 -0.5 86,752 - DZA65_RS00365 0.14 -1.6 86,752 - DZA65_RS00365 0.14 -0.2 86,752 - DZA65_RS00365 0.14 -0.1 86,752 - DZA65_RS00365 0.14 +0.0 86,757 + DZA65_RS00365 0.15 -0.8 86,757 + DZA65_RS00365 0.15 -1.0 86,758 - DZA65_RS00365 0.15 -0.8 86,758 - DZA65_RS00365 0.15 +1.0 86,758 - DZA65_RS00365 0.15 -0.8 86,807 + DZA65_RS00365 0.21 -0.8 86,824 - DZA65_RS00365 0.22 +1.3 86,995 - DZA65_RS00365 0.42 +0.1 87,072 + DZA65_RS00365 0.50 -1.0 87,072 + DZA65_RS00365 0.50 +0.9 87,073 - DZA65_RS00365 0.50 -0.3 87,073 - DZA65_RS00365 0.50 +0.3 87,073 - DZA65_RS00365 0.50 -0.3 87,244 + DZA65_RS00365 0.69 -0.3
Or see this region's nucleotide sequence