Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22935

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,157,308	+		DZA65_RS14485	0.25	+0.2
3,157,332	-		DZA65_RS14485	0.28	+0.1
3,157,495	-		DZA65_RS14485	0.52	+0.0
3,157,574	-		DZA65_RS14485	0.63	-0.9
3,157,577	+		DZA65_RS14485	0.63	-0.3
3,157,643	+		DZA65_RS14485	0.73	+0.5
3,157,644	-		DZA65_RS14485	0.73	+0.6
3,157,644	-		DZA65_RS14485	0.73	+3.5
3,157,657	-		DZA65_RS14485	0.75	+0.5
3,157,763	-				+1.6
3,157,766	-				+0.4
3,157,831	-				-0.5
3,157,876	+				-0.2
3,157,878	+				-1.7
3,157,891	-				+0.3
3,157,892	+				-0.4
3,157,902	+				-0.4
3,157,903	-				+0.6
3,157,927	+				+0.0
3,157,927	+				+0.2
3,157,928	-				-0.5
3,157,932	-				+0.1
3,157,935	-				-0.0
3,157,939	-				+0.3
3,157,961	+				+1.7
3,157,962	-				-0.5
3,157,979	+				-2.7
3,158,032	+				-0.3
3,158,033	-				-0.2
3,158,033	-				+0.6
3,158,140	-				+0.6
3,158,140	-				+0.2
3,158,140	-				-0.4
3,158,149	+				+0.1
3,158,149	+				+0.2
3,158,149	+				-1.2
3,158,150	-				+1.5
3,158,152	+				-0.3
3,158,152	+				-1.1
3,158,152	+				+0.8
3,158,152	+				+0.7
3,158,152	+				+0.1
3,158,152	+				-1.2
3,158,152	+				-0.4
3,158,153	-				-0.4
3,158,153	-				-0.2
3,158,153	-				-0.2
3,158,153	-				+1.1
3,158,153	-				-0.1
3,158,153	-				-1.3
3,158,245	+				+0.7
3,158,246	-				-0.8
3,158,248	+				-0.5
3,158,249	-				+0.5
3,158,249	-				-0.8
3,158,258	+				-0.2
3,158,259	-				-2.3
3,158,307	-		DZA65_RS22935	0.14	+0.5
3,158,347	+		DZA65_RS22935	0.33	+0.1
3,158,348	-		DZA65_RS22935	0.34	-0.1
3,158,348	-		DZA65_RS22935	0.34	-0.7
3,158,380	+		DZA65_RS22935	0.50	-1.3
3,158,380	+		DZA65_RS22935	0.50	-0.8
3,158,381	-		DZA65_RS22935	0.50	+0.1
3,158,393	-		DZA65_RS22935	0.56	-1.0
3,158,393	-		DZA65_RS22935	0.56	-0.4
3,158,393	-		DZA65_RS22935	0.56	-1.0
3,158,441	+		DZA65_RS22935	0.79	+0.3
3,158,442	-		DZA65_RS22935	0.80	-1.3
3,158,486	+				+0.3
3,158,486	+				+0.0
3,158,486	+				+0.3
3,158,486	+				+0.7
3,158,486	+				+1.0
3,158,487	-				+0.4
3,158,487	-				-0.6
3,158,487	-				+1.3
3,158,489	+				-0.1
3,158,489	+				-0.2
3,158,489	+				-1.3
3,158,489	+				+0.1
3,158,489	+				+0.2
3,158,490	-				+0.4
3,158,490	-				-0.1
3,158,490	-				+0.7
3,158,490	-				+0.4
3,158,490	-				-1.6
3,158,490	-				+0.0
3,158,499	+				+0.7
3,158,500	-				+0.0
3,158,540	+				+0.3
3,158,540	+				+0.7
3,158,540	+				-0.6
3,158,541	-				+0.3
3,158,541	-				+0.3
3,158,541	-				+1.3
3,158,543	+				+0.0
3,158,543	+				-0.9
3,158,543	+				-0.7
3,158,544	-				-0.6
3,158,544	-				-0.3
3,158,554	+				+0.4
3,158,554	+				-0.5
3,158,555	-				-0.9
3,158,558	+				-0.3
3,158,571	+				+1.2
3,158,571	+				-0.9
3,158,572	-				-2.3
3,158,572	-				-0.4
3,158,572	-				+0.4
3,158,639	+				-0.3
3,158,661	+				-0.5
3,158,662	-				+0.4
3,158,662	-				-0.1
3,158,687	+				-0.9
3,158,691	-				+0.3
3,158,709	+				+1.2
3,158,722	+				-0.1
3,158,722	+				+0.5
3,158,722	+				-1.2
3,158,842	+				-0.9
3,158,843	-				+0.1
3,158,843	-				+1.0
3,158,843	-				-0.2
3,158,843	-				-1.0
3,158,844	+				-1.7
3,158,844	+				-0.4
3,158,845	-				-0.8
3,158,845	-				-0.7
3,158,845	-				-0.1
3,158,845	-				-1.0
3,158,850	+				+1.7
3,158,851	-				-0.5
3,158,851	-				-0.5
3,158,894	-				+0.1
3,158,900	+				+0.6
3,158,904	+				-2.3
3,158,919	+				-0.8
3,158,920	-				-0.5
3,158,924	+				-0.1
3,158,964	+				-0.9
3,159,014	+				-2.0
3,159,015	-				+0.9
3,159,063	-				+0.0
3,159,063	-				+0.3
3,159,163	+		DZA65_RS14500	0.13	-0.5
3,159,164	-		DZA65_RS14500	0.14	-1.7
3,159,164	-		DZA65_RS14500	0.14	-0.0
3,159,221	+		DZA65_RS14500	0.19	+0.2
3,159,273	-		DZA65_RS14500	0.23	+0.1
3,159,287	+		DZA65_RS14500	0.25	+1.4
3,159,393	+		DZA65_RS14500	0.34	-1.9
3,159,393	+		DZA65_RS14500	0.34	+0.4
3,159,393	+		DZA65_RS14500	0.34	-1.9
3,159,394	-		DZA65_RS14500	0.34	-0.0