Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22475 and DZA65_RS22480 overlap by 4 nucleotides DZA65_RS22480 and DZA65_RS22485 are separated by 26 nucleotides DZA65_RS22485 and DZA65_RS22490 overlap by 29 nucleotides
DZA65_RS22475: DZA65_RS22475 - glycosyltransferase family 2 protein, at 4,859,622 to 4,861,331
_RS22475
DZA65_RS22480: DZA65_RS22480 - acyl-CoA thioesterase, at 4,861,328 to 4,861,756
_RS22480
DZA65_RS22485: DZA65_RS22485 - outer membrane lipoprotein carrier protein LolA, at 4,861,783 to 4,862,391
_RS22485
DZA65_RS22490: DZA65_RS22490 - hypothetical protein, at 4,862,363 to 4,864,681
_RS22490
Position (kb) 4861
4862
4863 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4860.825 kb on - strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4861.136 kb on - strand, within DZA65_RS22475 at 4861.143 kb on + strand, within DZA65_RS22475 at 4861.144 kb on - strand, within DZA65_RS22475 at 4861.221 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.505 kb on + strand, within DZA65_RS22480 at 4861.506 kb on - strand, within DZA65_RS22480 at 4861.506 kb on - strand, within DZA65_RS22480 at 4861.526 kb on - strand, within DZA65_RS22480 at 4861.538 kb on + strand, within DZA65_RS22480 at 4861.556 kb on + strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.665 kb on - strand, within DZA65_RS22480 at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.795 kb on - strand at 4861.843 kb on - strand at 4861.917 kb on + strand, within DZA65_RS22485 at 4861.918 kb on - strand, within DZA65_RS22485 at 4861.918 kb on - strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.069 kb on + strand at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.208 kb on - strand, within DZA65_RS22485 at 4862.310 kb on + strand, within DZA65_RS22485 at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.343 kb on + strand at 4862.343 kb on + strand at 4862.343 kb on + strand at 4862.344 kb on - strand at 4862.344 kb on - strand at 4862.344 kb on - strand at 4862.457 kb on + strand at 4862.457 kb on + strand at 4862.551 kb on + strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.811 kb on - strand, within DZA65_RS22490 at 4862.811 kb on - strand, within DZA65_RS22490 at 4862.956 kb on + strand, within DZA65_RS22490 at 4862.957 kb on - strand, within DZA65_RS22490 at 4862.957 kb on - strand, within DZA65_RS22490 at 4862.957 kb on - strand, within DZA65_RS22490 at 4862.963 kb on + strand, within DZA65_RS22490 at 4862.963 kb on + strand, within DZA65_RS22490 at 4862.964 kb on - strand, within DZA65_RS22490 at 4862.964 kb on - strand, within DZA65_RS22490 at 4863.004 kb on + strand, within DZA65_RS22490 at 4863.004 kb on + strand, within DZA65_RS22490 at 4863.005 kb on - strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.098 kb on - strand, within DZA65_RS22490 at 4863.098 kb on - strand, within DZA65_RS22490 at 4863.109 kb on + strand, within DZA65_RS22490 at 4863.116 kb on + strand, within DZA65_RS22490 at 4863.198 kb on + strand, within DZA65_RS22490 at 4863.198 kb on + strand, within DZA65_RS22490 at 4863.199 kb on - strand, within DZA65_RS22490 at 4863.225 kb on + strand, within DZA65_RS22490 at 4863.225 kb on + strand, within DZA65_RS22490 at 4863.226 kb on - strand, within DZA65_RS22490 at 4863.226 kb on - strand, within DZA65_RS22490 at 4863.294 kb on + strand, within DZA65_RS22490 at 4863.294 kb on + strand, within DZA65_RS22490 at 4863.294 kb on + strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.379 kb on - strand, within DZA65_RS22490
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,860,825 - DZA65_RS22475 0.70 -0.0 4,860,925 + DZA65_RS22475 0.76 +0.4 4,860,925 + DZA65_RS22475 0.76 -0.2 4,860,925 + DZA65_RS22475 0.76 -0.2 4,860,925 + DZA65_RS22475 0.76 +0.4 4,860,925 + DZA65_RS22475 0.76 +0.6 4,861,136 - DZA65_RS22475 0.89 +0.9 4,861,143 + DZA65_RS22475 0.89 +0.4 4,861,144 - DZA65_RS22475 0.89 -0.5 4,861,221 + -0.4 4,861,325 + -0.2 4,861,325 + -0.2 4,861,325 + +0.6 4,861,325 + -0.0 4,861,325 + -0.5 4,861,325 + +1.5 4,861,325 + -1.0 4,861,325 + -1.4 4,861,326 - -0.4 4,861,326 - -0.3 4,861,326 - -1.0 4,861,326 - +0.5 4,861,326 - -0.2 4,861,424 + DZA65_RS22480 0.22 -0.2 4,861,424 + DZA65_RS22480 0.22 -0.7 4,861,424 + DZA65_RS22480 0.22 -0.5 4,861,424 + DZA65_RS22480 0.22 +1.2 4,861,469 + DZA65_RS22480 0.33 -0.4 4,861,469 + DZA65_RS22480 0.33 +0.6 4,861,469 + DZA65_RS22480 0.33 +1.1 4,861,469 + DZA65_RS22480 0.33 -0.4 4,861,469 + DZA65_RS22480 0.33 +1.3 4,861,469 + DZA65_RS22480 0.33 -1.7 4,861,470 - DZA65_RS22480 0.33 -2.2 4,861,470 - DZA65_RS22480 0.33 -1.0 4,861,470 - DZA65_RS22480 0.33 -0.4 4,861,470 - DZA65_RS22480 0.33 +0.6 4,861,470 - DZA65_RS22480 0.33 +0.8 4,861,470 - DZA65_RS22480 0.33 -1.6 4,861,505 + DZA65_RS22480 0.41 -0.6 4,861,506 - DZA65_RS22480 0.41 +1.4 4,861,506 - DZA65_RS22480 0.41 -0.6 4,861,526 - DZA65_RS22480 0.46 +1.0 4,861,538 + DZA65_RS22480 0.49 +0.6 4,861,556 + DZA65_RS22480 0.53 +0.3 4,861,557 - DZA65_RS22480 0.53 -1.6 4,861,557 - DZA65_RS22480 0.53 -0.1 4,861,557 - DZA65_RS22480 0.53 +0.0 4,861,557 - DZA65_RS22480 0.53 +0.5 4,861,557 - DZA65_RS22480 0.53 +0.8 4,861,557 - DZA65_RS22480 0.53 -0.2 4,861,664 + DZA65_RS22480 0.78 -0.6 4,861,664 + DZA65_RS22480 0.78 -0.5 4,861,664 + DZA65_RS22480 0.78 +1.6 4,861,665 - DZA65_RS22480 0.79 +2.4 4,861,787 + -0.2 4,861,787 + -0.3 4,861,787 + -0.8 4,861,787 + -0.1 4,861,787 + +0.1 4,861,787 + -0.7 4,861,788 - -0.6 4,861,788 - +0.2 4,861,788 - -0.4 4,861,788 - +0.4 4,861,788 - -0.1 4,861,788 - +0.2 4,861,788 - -0.7 4,861,795 - +0.4 4,861,843 - -0.0 4,861,917 + DZA65_RS22485 0.22 +0.3 4,861,918 - DZA65_RS22485 0.22 +0.6 4,861,918 - DZA65_RS22485 0.22 +0.8 4,862,034 + DZA65_RS22485 0.41 -0.0 4,862,034 + DZA65_RS22485 0.41 +0.1 4,862,034 + DZA65_RS22485 0.41 -1.0 4,862,035 - DZA65_RS22485 0.41 +1.5 4,862,035 - DZA65_RS22485 0.41 +2.2 4,862,035 - DZA65_RS22485 0.41 -1.4 4,862,035 - DZA65_RS22485 0.41 +0.7 4,862,069 + -1.7 4,862,069 + DZA65_RS22485 0.47 +0.3 4,862,069 + DZA65_RS22485 0.47 -1.2 4,862,069 + DZA65_RS22485 0.47 +0.8 4,862,208 - DZA65_RS22485 0.70 -0.0 4,862,310 + DZA65_RS22485 0.87 +1.9 4,862,340 + -0.8 4,862,340 + -0.2 4,862,340 + -0.9 4,862,340 + -0.1 4,862,341 - +0.3 4,862,341 - -1.6 4,862,341 - +0.5 4,862,341 - +1.9 4,862,341 - +0.0 4,862,343 + -0.4 4,862,343 + -1.6 4,862,343 + -0.8 4,862,344 - -0.9 4,862,344 - +0.0 4,862,344 - +0.4 4,862,457 + -0.3 4,862,457 + +0.6 4,862,551 + -0.1 4,862,552 - +1.4 4,862,552 - +0.5 4,862,552 - +0.4 4,862,552 - +0.1 4,862,552 - +0.6 4,862,552 - +0.9 4,862,811 - DZA65_RS22490 0.19 -0.4 4,862,811 - DZA65_RS22490 0.19 -0.6 4,862,956 + DZA65_RS22490 0.26 +0.4 4,862,957 - DZA65_RS22490 0.26 -1.4 4,862,957 - DZA65_RS22490 0.26 +0.1 4,862,957 - DZA65_RS22490 0.26 +0.6 4,862,963 + DZA65_RS22490 0.26 -0.8 4,862,963 + DZA65_RS22490 0.26 -0.8 4,862,964 - DZA65_RS22490 0.26 -0.1 4,862,964 - DZA65_RS22490 0.26 +0.3 4,863,004 + DZA65_RS22490 0.28 +0.3 4,863,004 + DZA65_RS22490 0.28 -1.1 4,863,005 - DZA65_RS22490 0.28 -0.4 4,863,097 + DZA65_RS22490 0.32 -1.3 4,863,097 + DZA65_RS22490 0.32 +0.5 4,863,097 + DZA65_RS22490 0.32 -0.4 4,863,097 + DZA65_RS22490 0.32 +1.8 4,863,098 - DZA65_RS22490 0.32 +2.4 4,863,098 - DZA65_RS22490 0.32 -0.6 4,863,109 + DZA65_RS22490 0.32 -0.4 4,863,116 + DZA65_RS22490 0.32 -0.8 4,863,198 + DZA65_RS22490 0.36 -0.7 4,863,198 + DZA65_RS22490 0.36 -2.0 4,863,199 - DZA65_RS22490 0.36 +0.9 4,863,225 + DZA65_RS22490 0.37 -0.8 4,863,225 + DZA65_RS22490 0.37 -1.0 4,863,226 - DZA65_RS22490 0.37 +0.6 4,863,226 - DZA65_RS22490 0.37 +1.0 4,863,294 + DZA65_RS22490 0.40 +0.7 4,863,294 + DZA65_RS22490 0.40 -0.5 4,863,294 + DZA65_RS22490 0.40 -1.4 4,863,295 - DZA65_RS22490 0.40 +0.5 4,863,295 - DZA65_RS22490 0.40 -0.7 4,863,295 - DZA65_RS22490 0.40 -0.1 4,863,295 - DZA65_RS22490 0.40 -1.1 4,863,295 - DZA65_RS22490 0.40 -2.4 4,863,326 - DZA65_RS22490 0.42 -1.1 4,863,326 - DZA65_RS22490 0.42 +0.8 4,863,326 - DZA65_RS22490 0.42 +0.6 4,863,326 - DZA65_RS22490 0.42 +0.4 4,863,326 - DZA65_RS22490 0.42 -0.1 4,863,326 - DZA65_RS22490 0.42 +0.1 4,863,326 - DZA65_RS22490 0.42 +0.7 4,863,347 + DZA65_RS22490 0.42 -1.4 4,863,347 + DZA65_RS22490 0.42 -2.6 4,863,347 + DZA65_RS22490 0.42 -1.7 4,863,347 + DZA65_RS22490 0.42 -1.7 4,863,348 - DZA65_RS22490 0.42 +0.1 4,863,348 - DZA65_RS22490 0.42 -0.1 4,863,348 - DZA65_RS22490 0.42 +0.7 4,863,348 - DZA65_RS22490 0.42 -0.6 4,863,348 - DZA65_RS22490 0.42 +0.6 4,863,356 + DZA65_RS22490 0.43 -0.2 4,863,356 + DZA65_RS22490 0.43 +1.3 4,863,356 + DZA65_RS22490 0.43 -0.4 4,863,356 + DZA65_RS22490 0.43 -0.2 4,863,356 + DZA65_RS22490 0.43 -0.2 4,863,356 + DZA65_RS22490 0.43 +0.0 4,863,356 + DZA65_RS22490 0.43 +0.2 4,863,357 - DZA65_RS22490 0.43 +1.1 4,863,357 - DZA65_RS22490 0.43 +0.2 4,863,357 - DZA65_RS22490 0.43 -0.4 4,863,357 - DZA65_RS22490 0.43 -2.4 4,863,357 - DZA65_RS22490 0.43 -1.7 4,863,357 - DZA65_RS22490 0.43 -1.0 4,863,357 - DZA65_RS22490 0.43 -1.0 4,863,359 + DZA65_RS22490 0.43 -1.2 4,863,359 + DZA65_RS22490 0.43 -0.6 4,863,359 + DZA65_RS22490 0.43 +0.9 4,863,359 + DZA65_RS22490 0.43 -0.4 4,863,359 + DZA65_RS22490 0.43 +0.1 4,863,360 - DZA65_RS22490 0.43 -0.1 4,863,360 - DZA65_RS22490 0.43 +0.4 4,863,360 - DZA65_RS22490 0.43 -0.2 4,863,360 - DZA65_RS22490 0.43 -0.4 4,863,378 + DZA65_RS22490 0.44 -0.4 4,863,378 + DZA65_RS22490 0.44 -0.2 4,863,378 + DZA65_RS22490 0.44 -0.0 4,863,378 + DZA65_RS22490 0.44 -0.1 4,863,378 + DZA65_RS22490 0.44 -0.4 4,863,378 + DZA65_RS22490 0.44 -0.9 4,863,378 + DZA65_RS22490 0.44 -0.6 4,863,379 - DZA65_RS22490 0.44 -0.4
Or see this region's nucleotide sequence