Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21050

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
4,551,776	-	DZA65_RS21045	0.57	+1.0
4,551,847	+	DZA65_RS21045	0.60	-1.9
4,551,848	-	DZA65_RS21045	0.60	-0.4
4,551,848	-	DZA65_RS21045	0.60	-0.7
4,551,848	-	DZA65_RS21045	0.60	+0.4
4,551,879	+	DZA65_RS21045	0.62	-0.3
4,551,879	+	DZA65_RS21045	0.62	-1.2
4,551,879	+	DZA65_RS21045	0.62	-2.0
4,551,880	-	DZA65_RS21045	0.62	-0.5
4,551,880	-	DZA65_RS21045	0.62	+0.6
4,551,880	-	DZA65_RS21045	0.62	-1.2
4,551,880	-	DZA65_RS21045	0.62	-0.5
4,551,880	-	DZA65_RS21045	0.62	-1.4
4,551,959	+	DZA65_RS21045	0.67	-1.5
4,551,960	-	DZA65_RS21045	0.67	-0.6
4,551,965	+	DZA65_RS21045	0.67	-0.3
4,552,068	+	DZA65_RS21045	0.72	-0.8
4,552,069	-	DZA65_RS21045	0.73	-2.0
4,552,069	-	DZA65_RS21045	0.73	+0.7
4,552,087	+	DZA65_RS21045	0.73	-1.7
4,552,145	+	DZA65_RS21045	0.77	-1.9
4,552,145	+	DZA65_RS21045	0.77	-2.0
4,552,146	-	DZA65_RS21045	0.77	-0.9
4,552,213	+	DZA65_RS21045	0.80	+0.7
4,552,213	+	DZA65_RS21045	0.80	+1.3
4,552,213	+	DZA65_RS21045	0.80	-0.1
4,552,213	+	DZA65_RS21045	0.80	-0.1
4,552,213	+	DZA65_RS21045	0.80	+2.6
4,552,213	+	DZA65_RS21045	0.80	+0.1
4,552,213	+	DZA65_RS21045	0.80	-0.2
4,552,213	+	DZA65_RS21045	0.80	+0.0
4,552,213	+	DZA65_RS21045	0.80	+1.4
4,552,213	+	DZA65_RS21045	0.80	+0.1
4,552,213	+	DZA65_RS21045	0.80	-1.6
4,552,214	-	DZA65_RS21045	0.80	+0.1
4,552,214	-	DZA65_RS21045	0.80	-3.0
4,552,214	-	DZA65_RS21045	0.80	+0.7
4,552,214	-	DZA65_RS21045	0.80	+0.6
4,552,214	-	DZA65_RS21045	0.80	-0.8
4,552,214	-	DZA65_RS21045	0.80	-1.4
4,552,214	-	DZA65_RS21045	0.80	-0.2
4,552,309	+	DZA65_RS21045	0.86	+0.2
4,552,310	-	DZA65_RS21045	0.86	-0.4
4,552,310	-	DZA65_RS21045	0.86	-0.5
4,552,402	+			-0.8
4,552,402	+			-1.2
4,552,436	+			+0.7
4,552,473	-			-1.0
4,552,473	-			+0.7
4,552,504	+			+0.6
4,552,505	-			-0.4
4,552,554	+			+0.4
4,552,554	+			+0.5
4,552,554	+			-0.2
4,552,555	-			+0.6
4,552,555	-			-0.6
4,552,592	-			+1.3
4,552,613	-			+0.3
4,552,613	-			+0.5
4,552,613	-			-1.6
4,552,617	-			-2.0
4,552,617	-			+0.4
4,552,731	+			+0.1
4,552,731	+			-0.9
4,552,732	-			+0.0
4,552,732	-			+0.6
4,552,732	-			+0.3
4,552,732	-			+0.4
4,552,732	-			+0.3
4,552,732	-			-0.7
4,552,732	-			+0.1
4,552,732	-			-0.8
4,552,732	-			-0.0
4,552,778	+	DZA65_RS21050	0.64	+2.0
4,552,778	+	DZA65_RS21050	0.64	+0.8
4,552,778	+	DZA65_RS21050	0.64	+0.4
4,552,815	+			-1.0
4,552,816	-			+0.3
4,552,816	-			-0.7
4,552,824	+			+0.2
4,552,829	+			+0.3
4,552,829	+			+0.1
4,552,829	+			-1.6
4,552,829	+			-0.8
4,552,829	+			-0.9
4,552,829	+			-0.7
4,552,830	-			-0.7
4,552,830	-			-1.0
4,552,830	-			+0.2
4,552,830	-			+0.4
4,552,830	-			-0.5
4,552,830	-			-1.0
4,552,830	-			-0.7
4,552,866	+			+0.2
4,552,866	+			-0.9
4,552,866	+			+0.7
4,552,866	+			-0.0
4,552,866	+			-1.3
4,552,866	+			-1.1
4,552,866	+			-1.4
4,552,867	-			-0.0
4,552,867	-			+0.2
4,552,867	-			-1.3
4,552,867	-			-0.5
4,552,867	-			-0.1
4,552,867	-			-0.7
4,552,867	-			-0.4
4,552,867	-			-0.7
4,552,867	-			+0.4
4,552,867	-			+0.8
4,552,867	-			-0.6
4,552,867	-			-0.4
4,552,868	+			-0.6
4,552,894	+			-0.4
4,552,895	-			-1.0
4,552,920	+			+0.3
4,552,931	+			+0.6
4,552,985	+			+0.6
4,552,985	+			-0.2
4,552,985	+			+0.0
4,552,985	+			+1.8
4,552,985	+			-2.7
4,552,986	-			+0.4
4,552,986	-			+1.4
4,552,986	-			+0.8
4,552,986	-			-0.5
4,552,986	-			+0.8
4,552,988	+			-1.0
4,552,988	+			-0.4
4,552,988	+			-0.8
4,552,989	-			-0.8
4,552,989	-			-1.2
4,552,989	-			-0.5
4,552,989	-			-1.0
4,552,989	-			-2.2
4,552,989	-			+0.8
4,552,989	-			-0.4
4,552,989	-			+0.0
4,552,989	-			-0.3
4,552,989	-			-1.3
4,553,011	+			+0.8
4,553,011	+			-0.1
4,553,011	+			-0.4
4,553,011	+			+0.3
4,553,011	+			-1.4
4,553,011	+			+0.3
4,553,011	+			+0.3
4,553,011	+			+1.6
4,553,011	+			-0.5
4,553,011	+			-0.5
4,553,011	+			+0.7
4,553,011	+			-0.0
4,553,011	+			+0.0
4,553,011	+			+1.2
4,553,011	+			+0.3
4,553,011	+			-1.0
4,553,011	+			-0.4
4,553,011	+			-0.3
4,553,011	+			+0.8
4,553,011	+			-0.6
4,553,011	+			+0.5
4,553,011	+			-0.4
4,553,011	+			-1.3
4,553,011	+			-0.3
4,553,011	+			+0.1
4,553,011	+			+0.6
4,553,011	+			-0.4
4,553,011	+			+1.3
4,553,011	+			+0.7
4,553,011	+			-0.7
4,553,012	-			+0.3
4,553,012	-			-2.9
4,553,012	-			-0.4
4,553,012	-			+1.3
4,553,012	-			+0.3
4,553,012	-			+0.9
4,553,012	-			+0.4
4,553,012	-			-1.0
4,553,012	-			-0.3
4,553,012	-			+1.3
4,553,012	-			-0.0
4,553,012	-			+0.6
4,553,012	-			-0.7
4,553,012	-			-0.4
4,553,012	-			-0.1
4,553,012	-			-1.1
4,553,012	-			+0.4
4,553,012	-			-0.1
4,553,012	-			+0.0
4,553,012	-			-2.7
4,553,012	-			-0.4
4,553,036	+	DZA65_RS21055	0.12	-1.2
4,553,037	-	DZA65_RS21055	0.12	-1.7
4,553,037	-	DZA65_RS21055	0.12	-0.7
4,553,040	+	DZA65_RS21055	0.13	-2.6
4,553,040	+	DZA65_RS21055	0.13	+1.3
4,553,040	+	DZA65_RS21055	0.13	+0.7
4,553,040	+	DZA65_RS21055	0.13	+0.7
4,553,040	+	DZA65_RS21055	0.13	+0.4
4,553,040	+	DZA65_RS21055	0.13	-1.0
4,553,041	-	DZA65_RS21055	0.13	+0.4
4,553,041	-	DZA65_RS21055	0.13	-0.8
4,553,107	+	DZA65_RS21055	0.27	+0.8
4,553,304	+	DZA65_RS21055	0.69	-0.5
4,553,304	+	DZA65_RS21055	0.69	-0.3
4,553,304	+	DZA65_RS21055	0.69	-0.2
4,553,305	-	DZA65_RS21055	0.69	+1.3
4,553,305	-	DZA65_RS21055	0.69	+0.1
4,553,305	-	DZA65_RS21055	0.69	+0.8
4,553,305	-	DZA65_RS21055	0.69	-0.8
4,553,367	-			+1.0
4,553,392	+	DZA65_RS21055	0.87	+0.3
4,553,392	+	DZA65_RS21055	0.87	-0.2
4,553,393	-	DZA65_RS21055	0.88	+1.0
4,553,393	-	DZA65_RS21055	0.88	+1.8
4,553,393	-	DZA65_RS21055	0.88	-1.0
4,553,393	-	DZA65_RS21055	0.88	-0.1
4,553,396	+	DZA65_RS21055	0.88	+0.8
4,553,397	-	DZA65_RS21055	0.89	-0.6
4,553,436	+			+0.3
4,553,436	+			-2.2
4,553,436	+			+0.3
4,553,436	+			-0.6
4,553,436	+			+1.5
4,553,436	+			-0.4
4,553,436	+			-0.9
4,553,436	+			+0.1
4,553,437	-			+0.1
4,553,437	-			+1.3
4,553,437	-			+1.0
4,553,512	+			+1.1
4,553,548	+			-0.4
4,553,548	+			-0.3
4,553,549	-			-0.3
4,553,549	-			-0.4
4,553,549	-			-0.0
4,553,559	-			-0.4
4,553,559	-			-0.4
4,553,559	-			+1.1
4,553,559	-			+0.3
4,553,559	-			-0.1
4,553,559	-			+0.5
4,553,559	-			-0.2
4,553,581	+			+2.8
4,553,582	-			-1.4
4,553,601	+			-0.5
4,553,601	+			+1.2
4,553,601	+			+0.8
4,553,601	+			-0.3
4,553,601	+			+0.1
4,553,601	+			-0.1
4,553,601	+			-0.0
4,553,601	+			-0.6
4,553,601	+			+0.4
4,553,601	+			+0.6
4,553,602	-			+1.3
4,553,602	-			+0.2
4,553,602	-			+0.7
4,553,602	-			+0.6
4,553,602	-			-0.8
4,553,602	-			+0.4
4,553,602	-			-0.1
4,553,602	-			+1.0
4,553,602	-			-1.4
4,553,602	-			-0.0
4,553,602	-			+0.3
4,553,602	-			-0.6
4,553,602	-			-0.2
4,553,603	+			-2.4
4,553,603	+			-0.5
4,553,603	+			+1.0
4,553,603	+			-1.2
4,553,603	+			-0.2
4,553,603	+			-0.7
4,553,603	+			+0.8
4,553,603	+			-0.4
4,553,603	+			-1.9
4,553,603	+			+0.1
4,553,603	+			+0.7
4,553,603	+			-0.4
4,553,603	+			-0.3
4,553,603	+			-1.3
4,553,603	+			-0.4
4,553,603	+			+0.8
4,553,603	+			-0.4
4,553,603	+			-0.1
4,553,603	+			-0.5
4,553,603	+			+0.0
4,553,604	-			-0.3
4,553,604	-			-0.0
4,553,604	-			+0.1
4,553,604	-			+0.1
4,553,604	-			+0.9
4,553,604	-			+0.3
4,553,628	+			+0.0
4,553,628	+			+0.3
4,553,682	-	DZA65_RS21060	0.14	+0.9
4,553,726	+	DZA65_RS21060	0.19	-0.6
4,553,726	+	DZA65_RS21060	0.19	+1.2
4,553,727	-	DZA65_RS21060	0.19	-0.1
4,553,727	-	DZA65_RS21060	0.19	-0.7

Or see this region's nucleotide sequence