Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20315 and DZA65_RS20320 are separated by 18 nucleotides DZA65_RS20320 and DZA65_RS20325 overlap by 8 nucleotides DZA65_RS20325 and DZA65_RS20330 are separated by 19 nucleotides DZA65_RS20330 and DZA65_RS20335 overlap by 29 nucleotides
DZA65_RS20315: DZA65_RS20315 - shikimate dehydrogenase, at 4,405,788 to 4,406,615
_RS20315
DZA65_RS20320: DZA65_RS20320 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 4,406,634 to 4,407,203
_RS20320
DZA65_RS20325: DZA65_RS20325 - hypothetical protein, at 4,407,196 to 4,407,753
_RS20325
DZA65_RS20330: DZA65_RS20330 - DUF494 domain-containing protein, at 4,407,773 to 4,408,246
_RS20330
DZA65_RS20335: DZA65_RS20335 - DNA-protecting protein DprA, at 4,408,218 to 4,409,351
_RS20335
Position (kb) 4407
4408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4406.628 kb on + strand at 4406.628 kb on + strand at 4406.628 kb on + strand at 4406.636 kb on - strand at 4407.246 kb on + strand at 4407.246 kb on + strand at 4407.246 kb on + strand at 4407.247 kb on - strand at 4407.247 kb on - strand at 4407.266 kb on - strand, within DZA65_RS20325 at 4407.266 kb on - strand, within DZA65_RS20325 at 4407.290 kb on - strand, within DZA65_RS20325 at 4407.312 kb on - strand, within DZA65_RS20325 at 4407.336 kb on + strand, within DZA65_RS20325 at 4407.337 kb on - strand, within DZA65_RS20325 at 4407.343 kb on + strand, within DZA65_RS20325 at 4407.344 kb on - strand, within DZA65_RS20325 at 4407.405 kb on + strand, within DZA65_RS20325 at 4407.406 kb on - strand, within DZA65_RS20325 at 4407.406 kb on - strand, within DZA65_RS20325 at 4407.445 kb on + strand, within DZA65_RS20325 at 4407.446 kb on - strand, within DZA65_RS20325 at 4407.480 kb on + strand, within DZA65_RS20325 at 4407.481 kb on - strand, within DZA65_RS20325 at 4407.498 kb on - strand, within DZA65_RS20325 at 4407.498 kb on - strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.502 kb on - strand, within DZA65_RS20325 at 4407.502 kb on - strand, within DZA65_RS20325 at 4407.502 kb on - strand, within DZA65_RS20325 at 4407.525 kb on - strand, within DZA65_RS20325 at 4407.608 kb on + strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.616 kb on - strand, within DZA65_RS20325 at 4407.627 kb on + strand, within DZA65_RS20325 at 4407.627 kb on + strand, within DZA65_RS20325 at 4407.628 kb on - strand, within DZA65_RS20325 at 4407.628 kb on - strand, within DZA65_RS20325 at 4407.628 kb on - strand, within DZA65_RS20325 at 4407.629 kb on + strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.739 kb on + strand at 4407.739 kb on + strand at 4407.739 kb on + strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.758 kb on + strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.784 kb on - strand at 4407.784 kb on - strand at 4407.806 kb on + strand at 4407.806 kb on + strand at 4407.806 kb on + strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.879 kb on - strand, within DZA65_RS20330 at 4407.879 kb on - strand, within DZA65_RS20330 at 4407.879 kb on - strand, within DZA65_RS20330 at 4407.928 kb on + strand at 4407.929 kb on - strand, within DZA65_RS20330 at 4407.961 kb on + strand, within DZA65_RS20330 at 4407.962 kb on - strand, within DZA65_RS20330 at 4407.962 kb on - strand, within DZA65_RS20330 at 4407.962 kb on - strand, within DZA65_RS20330 at 4408.027 kb on + strand, within DZA65_RS20330 at 4408.027 kb on + strand, within DZA65_RS20330 at 4408.029 kb on + strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.130 kb on - strand, within DZA65_RS20330 at 4408.130 kb on - strand, within DZA65_RS20330 at 4408.130 kb on - strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.260 kb on + strand at 4408.261 kb on - strand at 4408.261 kb on - strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.263 kb on - strand at 4408.263 kb on - strand at 4408.263 kb on - strand at 4408.263 kb on - strand at 4408.270 kb on + strand at 4408.270 kb on + strand at 4408.271 kb on - strand at 4408.282 kb on - strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.303 kb on - strand at 4408.303 kb on - strand at 4408.303 kb on - strand at 4408.303 kb on - strand at 4408.318 kb on - strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.323 kb on - strand at 4408.323 kb on - strand at 4408.323 kb on - strand at 4408.323 kb on - strand at 4408.379 kb on + strand, within DZA65_RS20335 at 4408.379 kb on + strand, within DZA65_RS20335 at 4408.379 kb on + strand, within DZA65_RS20335 at 4408.380 kb on - strand, within DZA65_RS20335 at 4408.380 kb on - strand, within DZA65_RS20335 at 4408.392 kb on + strand, within DZA65_RS20335 at 4408.392 kb on + strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.448 kb on + strand, within DZA65_RS20335 at 4408.554 kb on + strand, within DZA65_RS20335 at 4408.554 kb on + strand, within DZA65_RS20335 at 4408.555 kb on - strand, within DZA65_RS20335 at 4408.555 kb on - strand, within DZA65_RS20335 at 4408.568 kb on + strand, within DZA65_RS20335 at 4408.611 kb on + strand, within DZA65_RS20335 at 4408.611 kb on + strand, within DZA65_RS20335 at 4408.611 kb on + strand, within DZA65_RS20335 at 4408.612 kb on - strand, within DZA65_RS20335 at 4408.612 kb on - strand, within DZA65_RS20335 at 4408.637 kb on - strand, within DZA65_RS20335 at 4408.698 kb on + strand, within DZA65_RS20335 at 4408.698 kb on + strand, within DZA65_RS20335 at 4408.698 kb on + strand, within DZA65_RS20335 at 4408.699 kb on - strand, within DZA65_RS20335 at 4408.699 kb on - strand, within DZA65_RS20335 at 4408.712 kb on + strand, within DZA65_RS20335 at 4408.712 kb on + strand, within DZA65_RS20335 at 4408.713 kb on - strand, within DZA65_RS20335 at 4408.713 kb on - strand, within DZA65_RS20335 at 4408.713 kb on - strand, within DZA65_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,406,628 + +0.4 4,406,628 + -0.1 4,406,628 + +0.3 4,406,636 - -0.0 4,407,246 + -0.6 4,407,246 + -1.8 4,407,246 + +0.1 4,407,247 - -0.6 4,407,247 - +1.9 4,407,266 - DZA65_RS20325 0.13 +0.0 4,407,266 - DZA65_RS20325 0.13 -0.1 4,407,290 - DZA65_RS20325 0.17 -0.2 4,407,312 - DZA65_RS20325 0.21 -0.6 4,407,336 + DZA65_RS20325 0.25 -1.6 4,407,337 - DZA65_RS20325 0.25 +0.4 4,407,343 + DZA65_RS20325 0.26 +0.5 4,407,344 - DZA65_RS20325 0.27 -0.3 4,407,405 + DZA65_RS20325 0.37 +0.1 4,407,406 - DZA65_RS20325 0.38 -0.2 4,407,406 - DZA65_RS20325 0.38 +0.1 4,407,445 + DZA65_RS20325 0.45 -0.5 4,407,446 - DZA65_RS20325 0.45 -0.5 4,407,480 + DZA65_RS20325 0.51 -1.1 4,407,481 - DZA65_RS20325 0.51 -0.1 4,407,498 - DZA65_RS20325 0.54 +0.4 4,407,498 - DZA65_RS20325 0.54 -2.5 4,407,501 + DZA65_RS20325 0.55 +0.9 4,407,501 + DZA65_RS20325 0.55 -0.2 4,407,501 + DZA65_RS20325 0.55 -1.1 4,407,501 + DZA65_RS20325 0.55 -0.5 4,407,502 - DZA65_RS20325 0.55 -0.9 4,407,502 - DZA65_RS20325 0.55 +0.7 4,407,502 - DZA65_RS20325 0.55 -0.9 4,407,525 - DZA65_RS20325 0.59 -1.1 4,407,608 + DZA65_RS20325 0.74 -0.3 4,407,609 - DZA65_RS20325 0.74 +0.3 4,407,609 - DZA65_RS20325 0.74 -2.1 4,407,609 - DZA65_RS20325 0.74 -1.5 4,407,609 - DZA65_RS20325 0.74 -0.9 4,407,609 - DZA65_RS20325 0.74 +0.2 4,407,616 - DZA65_RS20325 0.75 +1.5 4,407,627 + DZA65_RS20325 0.77 -1.8 4,407,627 + DZA65_RS20325 0.77 +0.2 4,407,628 - DZA65_RS20325 0.77 +0.7 4,407,628 - DZA65_RS20325 0.77 +0.3 4,407,628 - DZA65_RS20325 0.77 +0.5 4,407,629 + DZA65_RS20325 0.78 +0.2 4,407,630 - DZA65_RS20325 0.78 -1.7 4,407,630 - DZA65_RS20325 0.78 -1.1 4,407,630 - DZA65_RS20325 0.78 -1.6 4,407,630 - DZA65_RS20325 0.78 -0.0 4,407,630 - DZA65_RS20325 0.78 +0.7 4,407,630 - DZA65_RS20325 0.78 -0.5 4,407,735 + -0.3 4,407,735 + +0.2 4,407,735 + -0.8 4,407,735 + +0.5 4,407,735 + -0.9 4,407,736 - -1.1 4,407,736 - +0.5 4,407,736 - -0.2 4,407,736 - +0.2 4,407,736 - -0.6 4,407,736 - -0.1 4,407,736 - +0.2 4,407,736 - -1.1 4,407,736 - +0.0 4,407,739 + +0.7 4,407,739 + -1.4 4,407,739 + +1.9 4,407,740 - -0.3 4,407,740 - -0.3 4,407,740 - -0.2 4,407,740 - +1.1 4,407,740 - +0.8 4,407,758 + -1.7 4,407,759 - +0.9 4,407,759 - +0.1 4,407,784 - +0.5 4,407,784 - -0.1 4,407,806 + +0.2 4,407,806 + -0.1 4,407,806 + +0.2 4,407,807 - -0.7 4,407,807 - -2.3 4,407,807 - +1.3 4,407,807 - +0.2 4,407,807 - +0.1 4,407,807 - -1.6 4,407,879 - DZA65_RS20330 0.22 +0.1 4,407,879 - DZA65_RS20330 0.22 +0.5 4,407,879 - DZA65_RS20330 0.22 +0.2 4,407,928 + -1.5 4,407,929 - DZA65_RS20330 0.33 +0.5 4,407,961 + DZA65_RS20330 0.40 +0.9 4,407,962 - DZA65_RS20330 0.40 -1.2 4,407,962 - DZA65_RS20330 0.40 -0.4 4,407,962 - DZA65_RS20330 0.40 -0.3 4,408,027 + DZA65_RS20330 0.54 -0.9 4,408,027 + DZA65_RS20330 0.54 +1.1 4,408,029 + DZA65_RS20330 0.54 -0.4 4,408,030 - DZA65_RS20330 0.54 -0.7 4,408,030 - DZA65_RS20330 0.54 -0.7 4,408,030 - DZA65_RS20330 0.54 -0.0 4,408,030 - DZA65_RS20330 0.54 +1.3 4,408,030 - DZA65_RS20330 0.54 -1.5 4,408,125 + DZA65_RS20330 0.74 -2.8 4,408,125 + DZA65_RS20330 0.74 -1.8 4,408,125 + DZA65_RS20330 0.74 -0.3 4,408,125 + DZA65_RS20330 0.74 -0.5 4,408,126 - DZA65_RS20330 0.74 -1.1 4,408,126 - DZA65_RS20330 0.74 +0.3 4,408,126 - DZA65_RS20330 0.74 -1.1 4,408,126 - DZA65_RS20330 0.74 +0.0 4,408,126 - DZA65_RS20330 0.74 +0.3 4,408,126 - +0.5 4,408,126 - DZA65_RS20330 0.74 -1.0 4,408,126 - DZA65_RS20330 0.74 +0.9 4,408,126 - DZA65_RS20330 0.74 -0.7 4,408,130 - DZA65_RS20330 0.75 +0.2 4,408,130 - DZA65_RS20330 0.75 +1.0 4,408,130 - DZA65_RS20330 0.75 -1.1 4,408,174 + DZA65_RS20330 0.85 +0.9 4,408,174 + DZA65_RS20330 0.85 -1.3 4,408,174 + DZA65_RS20330 0.85 -0.1 4,408,174 + DZA65_RS20330 0.85 -1.8 4,408,174 + DZA65_RS20330 0.85 -1.9 4,408,175 - DZA65_RS20330 0.85 -0.8 4,408,175 - DZA65_RS20330 0.85 +1.1 4,408,175 - DZA65_RS20330 0.85 -0.3 4,408,175 - DZA65_RS20330 0.85 -0.8 4,408,175 - DZA65_RS20330 0.85 +0.6 4,408,175 - DZA65_RS20330 0.85 -0.5 4,408,175 - DZA65_RS20330 0.85 -0.1 4,408,175 - DZA65_RS20330 0.85 +2.0 4,408,175 - DZA65_RS20330 0.85 -1.8 4,408,175 - DZA65_RS20330 0.85 +0.8 4,408,175 - DZA65_RS20330 0.85 +0.4 4,408,212 + +3.3 4,408,212 + +0.9 4,408,212 + +1.3 4,408,212 + +0.7 4,408,212 + -0.8 4,408,212 + -0.3 4,408,212 + -0.4 4,408,213 - -2.2 4,408,213 - -0.5 4,408,213 - -2.6 4,408,213 - -1.3 4,408,213 - -1.1 4,408,213 - -0.1 4,408,213 - -0.5 4,408,213 - +0.5 4,408,227 + +0.3 4,408,227 + +0.8 4,408,227 + +1.4 4,408,227 + -1.1 4,408,227 + -2.5 4,408,227 + -0.5 4,408,227 + +0.3 4,408,227 + -0.2 4,408,228 - -0.5 4,408,228 - +0.3 4,408,228 - +0.4 4,408,228 - +0.7 4,408,228 - -0.1 4,408,228 - +0.9 4,408,228 - -0.2 4,408,228 - +0.1 4,408,228 - +2.1 4,408,235 + +0.8 4,408,235 + -2.3 4,408,235 + -2.6 4,408,235 + +0.4 4,408,235 + +1.3 4,408,235 + +1.1 4,408,236 - -0.7 4,408,236 - -0.2 4,408,236 - +0.1 4,408,236 - +2.1 4,408,236 - -0.4 4,408,236 - +0.0 4,408,236 - +0.0 4,408,236 - -0.5 4,408,236 - +0.0 4,408,260 + -0.2 4,408,261 - +1.9 4,408,261 - -0.3 4,408,262 + -1.1 4,408,262 + +0.8 4,408,262 + -2.6 4,408,262 + -1.2 4,408,262 + +0.3 4,408,263 - +0.4 4,408,263 - +0.5 4,408,263 - -0.1 4,408,263 - +0.2 4,408,270 + +0.3 4,408,270 + +0.5 4,408,271 - +0.1 4,408,282 - -1.2 4,408,302 + +1.3 4,408,302 + -2.3 4,408,302 + +0.1 4,408,302 + +0.9 4,408,302 + -0.1 4,408,303 - -0.2 4,408,303 - +0.7 4,408,303 - +0.5 4,408,303 - +0.3 4,408,318 - -1.4 4,408,322 + -0.2 4,408,322 + -1.8 4,408,322 + +1.9 4,408,322 + -0.2 4,408,322 + +0.8 4,408,323 - -0.7 4,408,323 - -0.3 4,408,323 - +0.3 4,408,323 - -0.7 4,408,379 + DZA65_RS20335 0.14 -0.5 4,408,379 + DZA65_RS20335 0.14 +0.2 4,408,379 + DZA65_RS20335 0.14 -0.3 4,408,380 - DZA65_RS20335 0.14 +0.5 4,408,380 - DZA65_RS20335 0.14 +1.5 4,408,392 + DZA65_RS20335 0.15 -0.5 4,408,392 + DZA65_RS20335 0.15 -1.2 4,408,393 - DZA65_RS20335 0.15 +0.5 4,408,393 - DZA65_RS20335 0.15 +0.3 4,408,393 - DZA65_RS20335 0.15 -1.1 4,408,393 - DZA65_RS20335 0.15 -0.2 4,408,448 + DZA65_RS20335 0.20 +0.7 4,408,554 + DZA65_RS20335 0.30 -1.6 4,408,554 + DZA65_RS20335 0.30 -0.1 4,408,555 - DZA65_RS20335 0.30 -0.6 4,408,555 - DZA65_RS20335 0.30 +1.2 4,408,568 + DZA65_RS20335 0.31 -0.6 4,408,611 + DZA65_RS20335 0.35 +0.2 4,408,611 + DZA65_RS20335 0.35 -0.7 4,408,611 + DZA65_RS20335 0.35 +0.0 4,408,612 - DZA65_RS20335 0.35 -0.1 4,408,612 - DZA65_RS20335 0.35 -0.1 4,408,637 - DZA65_RS20335 0.37 +0.3 4,408,698 + DZA65_RS20335 0.42 -0.1 4,408,698 + DZA65_RS20335 0.42 -0.3 4,408,698 + DZA65_RS20335 0.42 -0.2 4,408,699 - DZA65_RS20335 0.42 -0.7 4,408,699 - DZA65_RS20335 0.42 +1.9 4,408,712 + DZA65_RS20335 0.44 +0.3 4,408,712 + DZA65_RS20335 0.44 +0.8 4,408,713 - DZA65_RS20335 0.44 +0.2 4,408,713 - DZA65_RS20335 0.44 +1.5 4,408,713 - DZA65_RS20335 0.44 -0.7
Or see this region's nucleotide sequence