Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19960

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19945 and DZA65_RS19950 are separated by 14 nucleotidesDZA65_RS19950 and DZA65_RS19955 overlap by 17 nucleotidesDZA65_RS19955 and DZA65_RS19960 are separated by 4 nucleotidesDZA65_RS19960 and DZA65_RS19965 are separated by 11 nucleotides DZA65_RS19945: DZA65_RS19945 - nitrogen fixation protein NifM, at 4,316,383 to 4,317,168 _RS19945 DZA65_RS19950: DZA65_RS19950 - nitrogen fixation protein NifZ, at 4,317,183 to 4,317,626 _RS19950 DZA65_RS19955: DZA65_RS19955 - nitrogen fixation protein NifW, at 4,317,610 to 4,317,879 _RS19955 DZA65_RS19960: DZA65_RS19960 - homocitrate synthase, at 4,317,884 to 4,319,032 _RS19960 DZA65_RS19965: DZA65_RS19965 - cysteine desulfurase NifS, at 4,319,044 to 4,320,306 _RS19965 Position (kb) 4317 4318 4319 4320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4317.091 kb on + strandat 4317.091 kb on + strandat 4317.091 kb on + strandat 4317.091 kb on + strandat 4317.092 kb on - strandat 4317.092 kb on - strandat 4317.092 kb on - strandat 4317.092 kb on - strandat 4317.092 kb on - strandat 4317.254 kb on + strand, within DZA65_RS19950at 4317.255 kb on - strand, within DZA65_RS19950at 4317.255 kb on - strand, within DZA65_RS19950at 4317.354 kb on - strand, within DZA65_RS19950at 4317.354 kb on - strand, within DZA65_RS19950at 4317.354 kb on - strand, within DZA65_RS19950at 4317.354 kb on - strand, within DZA65_RS19950at 4317.466 kb on + strand, within DZA65_RS19950at 4317.466 kb on + strand, within DZA65_RS19950at 4317.466 kb on + strand, within DZA65_RS19950at 4317.466 kb on + strand, within DZA65_RS19950at 4317.466 kb on + strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.467 kb on - strand, within DZA65_RS19950at 4317.470 kb on + strand, within DZA65_RS19950at 4317.470 kb on + strand, within DZA65_RS19950at 4317.470 kb on + strand, within DZA65_RS19950at 4317.470 kb on + strand, within DZA65_RS19950at 4317.470 kb on + strand, within DZA65_RS19950at 4317.470 kb on + strand, within DZA65_RS19950at 4317.471 kb on - strand, within DZA65_RS19950at 4317.471 kb on - strand, within DZA65_RS19950at 4317.471 kb on - strand, within DZA65_RS19950at 4317.508 kb on + strand, within DZA65_RS19950at 4317.509 kb on - strand, within DZA65_RS19950at 4317.653 kb on + strand, within DZA65_RS19955at 4317.653 kb on + strand, within DZA65_RS19955at 4317.653 kb on + strand, within DZA65_RS19955at 4317.653 kb on + strand, within DZA65_RS19955at 4317.653 kb on + strand, within DZA65_RS19955at 4317.654 kb on - strand, within DZA65_RS19955at 4317.654 kb on - strand, within DZA65_RS19955at 4317.654 kb on - strand, within DZA65_RS19955at 4317.800 kb on + strand, within DZA65_RS19955at 4317.800 kb on + strand, within DZA65_RS19955at 4317.801 kb on - strand, within DZA65_RS19955at 4317.850 kb on + strand, within DZA65_RS19955at 4317.866 kb on + strandat 4317.866 kb on + strandat 4317.866 kb on + strandat 4317.866 kb on + strandat 4317.867 kb on - strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.933 kb on + strandat 4317.934 kb on - strandat 4317.934 kb on - strandat 4317.934 kb on - strandat 4317.934 kb on - strandat 4317.934 kb on - strandat 4317.965 kb on - strandat 4318.137 kb on + strand, within DZA65_RS19960at 4318.137 kb on + strand, within DZA65_RS19960at 4318.137 kb on + strand, within DZA65_RS19960at 4318.137 kb on + strand, within DZA65_RS19960at 4318.138 kb on - strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.220 kb on + strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.221 kb on - strand, within DZA65_RS19960at 4318.537 kb on + strand, within DZA65_RS19960at 4318.537 kb on + strand, within DZA65_RS19960at 4318.756 kb on + strand, within DZA65_RS19960at 4319.051 kb on + strandat 4319.051 kb on + strandat 4319.051 kb on + strandat 4319.051 kb on + strandat 4319.051 kb on + strandat 4319.051 kb on + strandat 4319.052 kb on - strandat 4319.052 kb on - strandat 4319.052 kb on - strandat 4319.052 kb on - strandat 4319.106 kb on - strandat 4319.123 kb on - strandat 4319.159 kb on + strandat 4319.160 kb on - strandat 4319.160 kb on - strandat 4319.160 kb on - strandat 4319.182 kb on - strand, within DZA65_RS19965at 4319.184 kb on - strand, within DZA65_RS19965at 4319.184 kb on - strand, within DZA65_RS19965at 4319.225 kb on + strand, within DZA65_RS19965at 4319.225 kb on + strand, within DZA65_RS19965at 4319.225 kb on + strand, within DZA65_RS19965at 4319.225 kb on + strand, within DZA65_RS19965at 4319.225 kb on + strand, within DZA65_RS19965at 4319.361 kb on + strand, within DZA65_RS19965at 4319.362 kb on - strand, within DZA65_RS19965at 4319.362 kb on - strand, within DZA65_RS19965at 4319.370 kb on + strand, within DZA65_RS19965at 4319.370 kb on + strand, within DZA65_RS19965at 4319.371 kb on - strand, within DZA65_RS19965at 4319.488 kb on + strand, within DZA65_RS19965at 4319.488 kb on + strand, within DZA65_RS19965at 4319.488 kb on + strand, within DZA65_RS19965at 4319.488 kb on + strand, within DZA65_RS19965at 4319.489 kb on - strand, within DZA65_RS19965at 4319.489 kb on - strandat 4319.535 kb on + strand, within DZA65_RS19965at 4319.615 kb on + strand, within DZA65_RS19965at 4319.615 kb on + strand, within DZA65_RS19965at 4319.615 kb on + strand, within DZA65_RS19965at 4319.615 kb on + strand, within DZA65_RS19965at 4319.615 kb on + strand, within DZA65_RS19965at 4319.615 kb on + strand, within DZA65_RS19965at 4319.616 kb on - strand, within DZA65_RS19965at 4319.616 kb on - strand, within DZA65_RS19965at 4319.616 kb on - strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strandat 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.740 kb on + strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.741 kb on - strand, within DZA65_RS19965at 4319.855 kb on + strand, within DZA65_RS19965at 4319.856 kb on - strand, within DZA65_RS19965at 4319.907 kb on + strand, within DZA65_RS19965at 4319.907 kb on + strand, within DZA65_RS19965at 4319.907 kb on + strand, within DZA65_RS19965at 4319.907 kb on + strand, within DZA65_RS19965at 4319.908 kb on - strand, within DZA65_RS19965at 4319.909 kb on + strand, within DZA65_RS19965at 4319.909 kb on + strand, within DZA65_RS19965at 4319.909 kb on + strand, within DZA65_RS19965at 4319.910 kb on - strand, within DZA65_RS19965at 4319.910 kb on - strand, within DZA65_RS19965at 4319.910 kb on - strand, within DZA65_RS19965

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,317,091 + -0.6
4,317,091 + +0.7
4,317,091 + -0.9
4,317,091 + -0.8
4,317,092 - -1.1
4,317,092 - +0.4
4,317,092 - +1.1
4,317,092 - +0.8
4,317,092 - +2.3
4,317,254 + DZA65_RS19950 0.16 -2.5
4,317,255 - DZA65_RS19950 0.16 -0.1
4,317,255 - DZA65_RS19950 0.16 +0.7
4,317,354 - DZA65_RS19950 0.39 -0.3
4,317,354 - DZA65_RS19950 0.39 -0.7
4,317,354 - DZA65_RS19950 0.39 +0.4
4,317,354 - DZA65_RS19950 0.39 -0.8
4,317,466 + DZA65_RS19950 0.64 +1.1
4,317,466 + DZA65_RS19950 0.64 -0.4
4,317,466 + DZA65_RS19950 0.64 -1.8
4,317,466 + DZA65_RS19950 0.64 +0.2
4,317,466 + DZA65_RS19950 0.64 +1.1
4,317,467 - DZA65_RS19950 0.64 +0.5
4,317,467 - DZA65_RS19950 0.64 -0.8
4,317,467 - DZA65_RS19950 0.64 -0.3
4,317,467 - DZA65_RS19950 0.64 -0.2
4,317,467 - DZA65_RS19950 0.64 +1.7
4,317,467 - DZA65_RS19950 0.64 -0.7
4,317,467 - DZA65_RS19950 0.64 +1.3
4,317,470 + DZA65_RS19950 0.65 -1.1
4,317,470 + DZA65_RS19950 0.65 +0.0
4,317,470 + DZA65_RS19950 0.65 -0.4
4,317,470 + DZA65_RS19950 0.65 -0.5
4,317,470 + DZA65_RS19950 0.65 +0.2
4,317,470 + DZA65_RS19950 0.65 -1.0
4,317,471 - DZA65_RS19950 0.65 +0.5
4,317,471 - DZA65_RS19950 0.65 +1.3
4,317,471 - DZA65_RS19950 0.65 -1.6
4,317,508 + DZA65_RS19950 0.73 -1.1
4,317,509 - DZA65_RS19950 0.73 +1.5
4,317,653 + DZA65_RS19955 0.16 +2.0
4,317,653 + DZA65_RS19955 0.16 -2.3
4,317,653 + DZA65_RS19955 0.16 +0.2
4,317,653 + DZA65_RS19955 0.16 +0.9
4,317,653 + DZA65_RS19955 0.16 +0.8
4,317,654 - DZA65_RS19955 0.16 -0.8
4,317,654 - DZA65_RS19955 0.16 -0.2
4,317,654 - DZA65_RS19955 0.16 -0.1
4,317,800 + DZA65_RS19955 0.70 +0.8
4,317,800 + DZA65_RS19955 0.70 -0.3
4,317,801 - DZA65_RS19955 0.71 -1.8
4,317,850 + DZA65_RS19955 0.89 -0.1
4,317,866 + +0.3
4,317,866 + +2.3
4,317,866 + +0.2
4,317,866 + +0.1
4,317,867 - -1.5
4,317,933 + +0.6
4,317,933 + +0.5
4,317,933 + +0.0
4,317,933 + -1.1
4,317,933 + +0.2
4,317,933 + -2.5
4,317,933 + -0.6
4,317,933 + +0.3
4,317,934 - -0.1
4,317,934 - -1.2
4,317,934 - +1.0
4,317,934 - +0.2
4,317,934 - +1.3
4,317,965 - -1.8
4,318,137 + DZA65_RS19960 0.22 +0.3
4,318,137 + DZA65_RS19960 0.22 -0.0
4,318,137 + DZA65_RS19960 0.22 +0.2
4,318,137 + DZA65_RS19960 0.22 -1.1
4,318,138 - DZA65_RS19960 0.22 +0.1
4,318,220 + DZA65_RS19960 0.29 +1.2
4,318,220 + DZA65_RS19960 0.29 -0.1
4,318,220 + DZA65_RS19960 0.29 +0.2
4,318,220 + DZA65_RS19960 0.29 +0.2
4,318,220 + DZA65_RS19960 0.29 +0.2
4,318,220 + DZA65_RS19960 0.29 -1.4
4,318,220 + DZA65_RS19960 0.29 +0.7
4,318,221 - DZA65_RS19960 0.29 +1.3
4,318,221 - DZA65_RS19960 0.29 +1.1
4,318,221 - DZA65_RS19960 0.29 -0.1
4,318,221 - DZA65_RS19960 0.29 +0.8
4,318,221 - DZA65_RS19960 0.29 +0.1
4,318,221 - DZA65_RS19960 0.29 +1.3
4,318,221 - DZA65_RS19960 0.29 +0.5
4,318,221 - DZA65_RS19960 0.29 +0.3
4,318,221 - DZA65_RS19960 0.29 +0.2
4,318,221 - DZA65_RS19960 0.29 -0.1
4,318,221 - DZA65_RS19960 0.29 -0.1
4,318,537 + DZA65_RS19960 0.57 +0.4
4,318,537 + DZA65_RS19960 0.57 -0.4
4,318,756 + DZA65_RS19960 0.76 -0.6
4,319,051 + +0.3
4,319,051 + -0.3
4,319,051 + +0.9
4,319,051 + -1.8
4,319,051 + -0.9
4,319,051 + -2.5
4,319,052 - -0.5
4,319,052 - +0.1
4,319,052 - +0.9
4,319,052 - +0.5
4,319,106 - -0.1
4,319,123 - -0.2
4,319,159 + -0.5
4,319,160 - -1.9
4,319,160 - -0.5
4,319,160 - +1.4
4,319,182 - DZA65_RS19965 0.11 -0.5
4,319,184 - DZA65_RS19965 0.11 +0.4
4,319,184 - DZA65_RS19965 0.11 -0.2
4,319,225 + DZA65_RS19965 0.14 -0.1
4,319,225 + DZA65_RS19965 0.14 -1.1
4,319,225 + DZA65_RS19965 0.14 +0.9
4,319,225 + DZA65_RS19965 0.14 -0.1
4,319,225 + DZA65_RS19965 0.14 -0.5
4,319,361 + DZA65_RS19965 0.25 +0.4
4,319,362 - DZA65_RS19965 0.25 +0.6
4,319,362 - DZA65_RS19965 0.25 +0.1
4,319,370 + DZA65_RS19965 0.26 -0.8
4,319,370 + DZA65_RS19965 0.26 +0.5
4,319,371 - DZA65_RS19965 0.26 -0.3
4,319,488 + DZA65_RS19965 0.35 +0.3
4,319,488 + DZA65_RS19965 0.35 +0.4
4,319,488 + DZA65_RS19965 0.35 -0.7
4,319,488 + DZA65_RS19965 0.35 -2.8
4,319,489 - DZA65_RS19965 0.35 -0.1
4,319,489 - +0.9
4,319,535 + DZA65_RS19965 0.39 -0.8
4,319,615 + DZA65_RS19965 0.45 +0.4
4,319,615 + DZA65_RS19965 0.45 +1.3
4,319,615 + DZA65_RS19965 0.45 +0.0
4,319,615 + DZA65_RS19965 0.45 +0.0
4,319,615 + DZA65_RS19965 0.45 -0.4
4,319,615 + DZA65_RS19965 0.45 -0.3
4,319,616 - DZA65_RS19965 0.45 +0.1
4,319,616 - DZA65_RS19965 0.45 -0.1
4,319,616 - DZA65_RS19965 0.45 -1.5
4,319,740 + DZA65_RS19965 0.55 +1.0
4,319,740 + +1.1
4,319,740 + DZA65_RS19965 0.55 -0.6
4,319,740 + DZA65_RS19965 0.55 +0.2
4,319,740 + DZA65_RS19965 0.55 -0.1
4,319,740 + DZA65_RS19965 0.55 -0.1
4,319,740 + DZA65_RS19965 0.55 +0.3
4,319,740 + DZA65_RS19965 0.55 -0.1
4,319,740 + DZA65_RS19965 0.55 -1.8
4,319,740 + DZA65_RS19965 0.55 +0.5
4,319,741 - DZA65_RS19965 0.55 +1.1
4,319,741 - DZA65_RS19965 0.55 -0.3
4,319,741 - DZA65_RS19965 0.55 -0.6
4,319,741 - DZA65_RS19965 0.55 +1.2
4,319,741 - DZA65_RS19965 0.55 +0.8
4,319,741 - DZA65_RS19965 0.55 +1.0
4,319,741 - DZA65_RS19965 0.55 +0.9
4,319,741 - DZA65_RS19965 0.55 +0.0
4,319,741 - DZA65_RS19965 0.55 -0.1
4,319,855 + DZA65_RS19965 0.64 -0.9
4,319,856 - DZA65_RS19965 0.64 +0.2
4,319,907 + DZA65_RS19965 0.68 -0.1
4,319,907 + DZA65_RS19965 0.68 +1.0
4,319,907 + DZA65_RS19965 0.68 -0.3
4,319,907 + DZA65_RS19965 0.68 -0.8
4,319,908 - DZA65_RS19965 0.68 -1.6
4,319,909 + DZA65_RS19965 0.68 +0.3
4,319,909 + DZA65_RS19965 0.68 +1.0
4,319,909 + DZA65_RS19965 0.68 -0.1
4,319,910 - DZA65_RS19965 0.69 +0.3
4,319,910 - DZA65_RS19965 0.69 +0.7
4,319,910 - DZA65_RS19965 0.69 +0.1

Or see this region's nucleotide sequence