Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19400 and DZA65_RS19405 overlap by 20 nucleotides DZA65_RS19405 and DZA65_RS19410 are separated by 3 nucleotides DZA65_RS19410 and DZA65_RS19415 overlap by 1 nucleotides
DZA65_RS19400: DZA65_RS19400 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 4,197,213 to 4,198,163
_RS19400
DZA65_RS19405: DZA65_RS19405 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,198,144 to 4,198,617
_RS19405
DZA65_RS19410: DZA65_RS19410 - lipoprotein signal peptidase, at 4,198,621 to 4,199,127
_RS19410
DZA65_RS19415: DZA65_RS19415 - isoleucine--tRNA ligase, at 4,199,127 to 4,201,952
_RS19415
Position (kb)
4198
4199 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4197.194 kb on + strand at 4197.195 kb on - strand at 4197.214 kb on + strand at 4197.214 kb on + strand at 4197.214 kb on + strand at 4197.214 kb on + strand at 4197.215 kb on - strand at 4197.215 kb on - strand at 4197.215 kb on - strand at 4197.215 kb on - strand at 4197.215 kb on - strand at 4197.215 kb on - strand at 4197.219 kb on + strand at 4197.220 kb on - strand at 4197.220 kb on - strand at 4197.220 kb on - strand at 4197.237 kb on - strand at 4198.294 kb on - strand, within DZA65_RS19405 at 4198.355 kb on - strand, within DZA65_RS19405 at 4198.355 kb on - strand, within DZA65_RS19405 at 4198.355 kb on - strand, within DZA65_RS19405 at 4198.573 kb on - strand at 4198.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,197,194 + -0.7 4,197,195 - +0.2 4,197,214 + +1.2 4,197,214 + -0.5 4,197,214 + -2.2 4,197,214 + -1.5 4,197,215 - -0.5 4,197,215 - +2.6 4,197,215 - +1.2 4,197,215 - +1.0 4,197,215 - -0.3 4,197,215 - +1.2 4,197,219 + -0.5 4,197,220 - -0.5 4,197,220 - -1.0 4,197,220 - -1.2 4,197,237 - -1.1 4,198,294 - DZA65_RS19405 0.32 -1.8 4,198,355 - DZA65_RS19405 0.45 +0.0 4,198,355 - DZA65_RS19405 0.45 -0.1 4,198,355 - DZA65_RS19405 0.45 -0.6 4,198,573 - -0.9 4,198,573 - -0.1
Or see this region's nucleotide sequence