Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19290 and DZA65_RS19295 are separated by 1 nucleotides DZA65_RS19295 and DZA65_RS19300 are separated by 66 nucleotides DZA65_RS19300 and DZA65_RS19305 are separated by 179 nucleotides
DZA65_RS19290: DZA65_RS19290 - hypothetical protein, at 4,169,309 to 4,169,875
_RS19290
DZA65_RS19295: DZA65_RS19295 - hypothetical protein, at 4,169,877 to 4,170,644
_RS19295
DZA65_RS19300: DZA65_RS19300 - Hcp family type VI secretion system effector, at 4,170,711 to 4,171,190
_RS19300
DZA65_RS19305: DZA65_RS19305 - DNA polymerase II, at 4,171,370 to 4,173,742
_RS19305
Position (kb) 4170
4171
4172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4169.775 kb on + strand, within DZA65_RS19290 at 4169.776 kb on - strand, within DZA65_RS19290 at 4169.887 kb on + strand at 4169.923 kb on + strand at 4169.924 kb on - strand at 4169.924 kb on - strand at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.968 kb on + strand, within DZA65_RS19295 at 4169.969 kb on - strand, within DZA65_RS19295 at 4169.971 kb on + strand, within DZA65_RS19295 at 4169.972 kb on - strand, within DZA65_RS19295 at 4170.005 kb on - strand, within DZA65_RS19295 at 4170.060 kb on + strand, within DZA65_RS19295 at 4170.073 kb on + strand, within DZA65_RS19295 at 4170.094 kb on - strand, within DZA65_RS19295 at 4170.168 kb on - strand, within DZA65_RS19295 at 4170.262 kb on - strand, within DZA65_RS19295 at 4170.292 kb on - strand, within DZA65_RS19295 at 4170.303 kb on - strand, within DZA65_RS19295 at 4170.359 kb on - strand, within DZA65_RS19295 at 4170.435 kb on - strand, within DZA65_RS19295 at 4170.465 kb on - strand, within DZA65_RS19295 at 4170.692 kb on + strand at 4170.783 kb on - strand, within DZA65_RS19300 at 4170.783 kb on - strand, within DZA65_RS19300 at 4170.788 kb on + strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.892 kb on + strand, within DZA65_RS19300 at 4171.067 kb on - strand, within DZA65_RS19300 at 4171.103 kb on + strand, within DZA65_RS19300 at 4171.175 kb on - strand at 4171.223 kb on - strand at 4171.244 kb on + strand at 4171.272 kb on + strand at 4171.273 kb on - strand at 4171.273 kb on - strand at 4171.285 kb on + strand at 4171.316 kb on + strand at 4171.317 kb on - strand at 4171.318 kb on + strand at 4171.319 kb on - strand at 4171.321 kb on - strand at 4171.341 kb on + strand at 4171.341 kb on + strand at 4171.342 kb on - strand at 4171.342 kb on - strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.401 kb on + strand at 4171.402 kb on - strand at 4171.402 kb on - strand at 4171.515 kb on + strand at 4171.548 kb on + strand at 4171.548 kb on + strand at 4171.548 kb on + strand at 4171.548 kb on + strand at 4171.549 kb on - strand at 4171.626 kb on - strand, within DZA65_RS19305 at 4171.637 kb on + strand, within DZA65_RS19305 at 4171.637 kb on + strand, within DZA65_RS19305 at 4171.638 kb on - strand, within DZA65_RS19305 at 4171.638 kb on - strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.692 kb on - strand at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.738 kb on + strand, within DZA65_RS19305 at 4171.739 kb on - strand, within DZA65_RS19305 at 4171.880 kb on + strand, within DZA65_RS19305 at 4171.881 kb on - strand, within DZA65_RS19305 at 4171.881 kb on - strand, within DZA65_RS19305 at 4171.881 kb on - strand, within DZA65_RS19305 at 4171.886 kb on - strand, within DZA65_RS19305 at 4171.917 kb on + strand, within DZA65_RS19305 at 4171.917 kb on + strand, within DZA65_RS19305 at 4171.917 kb on + strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.921 kb on + strand at 4171.921 kb on + strand, within DZA65_RS19305 at 4171.921 kb on + strand, within DZA65_RS19305 at 4171.921 kb on + strand at 4171.921 kb on + strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.976 kb on + strand, within DZA65_RS19305 at 4171.976 kb on + strand, within DZA65_RS19305 at 4171.976 kb on + strand, within DZA65_RS19305 at 4171.977 kb on - strand, within DZA65_RS19305
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,169,775 + DZA65_RS19290 0.82 +0.8 4,169,776 - DZA65_RS19290 0.82 -1.1 4,169,887 + -0.0 4,169,923 + -0.1 4,169,924 - +1.4 4,169,924 - -0.2 4,169,966 - DZA65_RS19295 0.12 +0.2 4,169,966 - DZA65_RS19295 0.12 +0.5 4,169,968 + DZA65_RS19295 0.12 -3.8 4,169,969 - DZA65_RS19295 0.12 +0.5 4,169,971 + DZA65_RS19295 0.12 +0.0 4,169,972 - DZA65_RS19295 0.12 -0.4 4,170,005 - DZA65_RS19295 0.17 -1.5 4,170,060 + DZA65_RS19295 0.24 -0.3 4,170,073 + DZA65_RS19295 0.26 -0.5 4,170,094 - DZA65_RS19295 0.28 +1.2 4,170,168 - DZA65_RS19295 0.38 +0.0 4,170,262 - DZA65_RS19295 0.50 +0.5 4,170,292 - DZA65_RS19295 0.54 -0.5 4,170,303 - DZA65_RS19295 0.55 +0.0 4,170,359 - DZA65_RS19295 0.63 -0.7 4,170,435 - DZA65_RS19295 0.73 +1.5 4,170,465 - DZA65_RS19295 0.77 +1.2 4,170,692 + +0.2 4,170,783 - DZA65_RS19300 0.15 +0.3 4,170,783 - DZA65_RS19300 0.15 +1.7 4,170,788 + DZA65_RS19300 0.16 -0.9 4,170,815 - DZA65_RS19300 0.22 -0.8 4,170,815 - DZA65_RS19300 0.22 -1.0 4,170,815 - DZA65_RS19300 0.22 -1.0 4,170,892 + DZA65_RS19300 0.38 +0.1 4,171,067 - DZA65_RS19300 0.74 -0.7 4,171,103 + DZA65_RS19300 0.82 -0.8 4,171,175 - +0.4 4,171,223 - -0.5 4,171,244 + +1.4 4,171,272 + -0.6 4,171,273 - +0.3 4,171,273 - +0.4 4,171,285 + -0.5 4,171,316 + -0.4 4,171,317 - +0.2 4,171,318 + +1.5 4,171,319 - -0.7 4,171,321 - +0.4 4,171,341 + -2.7 4,171,341 + -2.3 4,171,342 - +0.1 4,171,342 - +1.3 4,171,350 + +0.2 4,171,350 + -1.8 4,171,350 + -0.2 4,171,350 + -0.5 4,171,350 + -0.1 4,171,350 + +0.9 4,171,350 + -1.3 4,171,351 - +0.5 4,171,351 - +0.7 4,171,351 - -0.5 4,171,351 - +0.5 4,171,351 - -1.0 4,171,351 - -1.5 4,171,401 + +0.9 4,171,402 - +0.1 4,171,402 - -0.1 4,171,515 + +0.7 4,171,548 + -0.3 4,171,548 + +0.3 4,171,548 + +0.8 4,171,548 + -0.4 4,171,549 - -0.7 4,171,626 - DZA65_RS19305 0.11 +0.4 4,171,637 + DZA65_RS19305 0.11 +1.6 4,171,637 + DZA65_RS19305 0.11 +2.3 4,171,638 - DZA65_RS19305 0.11 -0.0 4,171,638 - DZA65_RS19305 0.11 +0.5 4,171,691 + DZA65_RS19305 0.14 -0.5 4,171,691 + DZA65_RS19305 0.14 -1.0 4,171,691 + DZA65_RS19305 0.14 -0.9 4,171,691 + DZA65_RS19305 0.14 +0.8 4,171,691 + DZA65_RS19305 0.14 +0.3 4,171,691 + DZA65_RS19305 0.14 +1.5 4,171,692 - +2.1 4,171,692 - DZA65_RS19305 0.14 +0.7 4,171,692 - DZA65_RS19305 0.14 +0.5 4,171,692 - DZA65_RS19305 0.14 +0.1 4,171,692 - DZA65_RS19305 0.14 -1.0 4,171,692 - DZA65_RS19305 0.14 -0.3 4,171,692 - DZA65_RS19305 0.14 +0.8 4,171,738 + DZA65_RS19305 0.16 +1.1 4,171,739 - DZA65_RS19305 0.16 -0.3 4,171,880 + DZA65_RS19305 0.21 -1.8 4,171,881 - DZA65_RS19305 0.22 +2.6 4,171,881 - DZA65_RS19305 0.22 +1.4 4,171,881 - DZA65_RS19305 0.22 -2.2 4,171,886 - DZA65_RS19305 0.22 -1.5 4,171,917 + DZA65_RS19305 0.23 +0.7 4,171,917 + DZA65_RS19305 0.23 -0.5 4,171,917 + DZA65_RS19305 0.23 -1.3 4,171,918 - DZA65_RS19305 0.23 -0.5 4,171,918 - DZA65_RS19305 0.23 -0.8 4,171,918 - DZA65_RS19305 0.23 +0.1 4,171,918 - DZA65_RS19305 0.23 +0.7 4,171,918 - DZA65_RS19305 0.23 +0.7 4,171,918 - DZA65_RS19305 0.23 +0.5 4,171,918 - DZA65_RS19305 0.23 +0.3 4,171,921 + +0.5 4,171,921 + DZA65_RS19305 0.23 +0.0 4,171,921 + DZA65_RS19305 0.23 +0.2 4,171,921 + +0.5 4,171,921 + DZA65_RS19305 0.23 -1.2 4,171,922 - DZA65_RS19305 0.23 -0.1 4,171,922 - DZA65_RS19305 0.23 +0.1 4,171,922 - DZA65_RS19305 0.23 +0.2 4,171,922 - DZA65_RS19305 0.23 +0.1 4,171,922 - DZA65_RS19305 0.23 -0.5 4,171,922 - DZA65_RS19305 0.23 +0.8 4,171,922 - DZA65_RS19305 0.23 -1.1 4,171,922 - DZA65_RS19305 0.23 +0.4 4,171,976 + DZA65_RS19305 0.26 +0.2 4,171,976 + DZA65_RS19305 0.26 +0.0 4,171,976 + DZA65_RS19305 0.26 -0.5 4,171,977 - DZA65_RS19305 0.26 -1.1
Or see this region's nucleotide sequence