Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18960

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,093,806	+		DZA65_RS18950	0.63	-0.3
4,093,806	+		DZA65_RS18950	0.63	+0.0
4,093,806	+		DZA65_RS18950	0.63	-2.5
4,093,807	-		DZA65_RS18950	0.63	-0.6
4,093,807	-		DZA65_RS18950	0.63	+0.5
4,093,807	-		DZA65_RS18950	0.63	+2.3
4,093,807	-		DZA65_RS18950	0.63	-0.1
4,093,807	-		DZA65_RS18950	0.63	+1.1
4,093,907	-		DZA65_RS18950	0.84	+1.0
4,093,963	-				+0.7
4,093,963	-				-0.1
4,093,963	-				+0.6
4,093,963	-				+0.4
4,093,987	+				+0.3
4,093,987	+				+0.7
4,093,987	+				-0.8
4,093,987	+				-0.2
4,093,987	+				-0.7
4,093,987	+				-0.8
4,093,988	-				+0.8
4,094,284	+		DZA65_RS18955	0.43	-2.5
4,094,284	+				+0.5
4,094,285	-		DZA65_RS18955	0.43	-1.5
4,094,389	+		DZA65_RS18955	0.59	-0.3
4,094,390	-		DZA65_RS18955	0.59	-0.3
4,094,396	+		DZA65_RS18955	0.60	-0.1
4,094,397	-		DZA65_RS18955	0.60	-1.1
4,094,397	-		DZA65_RS18955	0.60	-0.8
4,094,397	-		DZA65_RS18955	0.60	-0.1
4,094,407	+		DZA65_RS18955	0.61	-1.5
4,094,425	+		DZA65_RS18955	0.64	+2.3
4,094,425	+		DZA65_RS18955	0.64	-0.2
4,094,426	-		DZA65_RS18955	0.64	-0.8
4,094,426	-		DZA65_RS18955	0.64	-0.2
4,094,467	+		DZA65_RS18955	0.70	-0.4
4,094,467	+		DZA65_RS18955	0.70	+0.1
4,094,567	-		DZA65_RS18955	0.85	+0.6
4,094,600	+		DZA65_RS18955	0.89	-0.1
4,094,600	+				+1.2
4,094,600	+		DZA65_RS18955	0.89	-0.5
4,094,600	+		DZA65_RS18955	0.89	+1.8
4,094,600	+		DZA65_RS18955	0.89	+0.6
4,094,601	-		DZA65_RS18955	0.90	-0.2
4,094,601	-		DZA65_RS18955	0.90	-0.5
4,094,604	+				+0.8
4,094,604	+				-1.8
4,094,604	+				-0.3
4,094,604	+				+0.8
4,094,604	+				+0.7
4,094,604	+				+1.5
4,094,605	-				+0.9
4,094,605	-				+0.5
4,094,667	+				+0.2
4,094,667	+				-0.2
4,094,668	-				-0.5
4,094,668	-				-2.8
4,094,669	+				+1.2
4,094,669	+				-0.6
4,094,670	-				-0.8
4,094,670	-				-0.5
4,094,670	-				-0.2
4,094,694	+				+0.5
4,094,714	-				+0.2
4,094,739	+				-0.0
4,094,739	+				-0.1
4,094,739	+				+0.2
4,094,740	-				-0.5
4,094,750	+				+0.5
4,094,750	+				-1.5
4,094,750	+				+0.2
4,094,750	+				+0.7
4,094,751	-				+1.8
4,094,751	-				-0.1
4,094,751	-				+0.2
4,094,751	-				+0.9
4,094,751	-				+1.6
4,094,751	-				-0.8
4,094,804	+				-0.7
4,094,804	+				-0.6
4,094,804	+				-0.5
4,094,804	+				-0.5
4,094,804	+				-0.5
4,094,805	-				-0.4
4,094,805	-				+0.1
4,094,805	-				-0.1
4,094,861	+				-0.3
4,094,862	-				-0.5
4,094,908	+				+0.3
4,094,908	+				+1.3
4,094,909	-				-0.1
4,094,909	-				+0.5
4,094,909	-				-0.8
4,094,909	-				+0.3
4,094,916	-				-1.7
4,095,023	+		DZA65_RS18960	0.16	+1.0
4,095,023	+		DZA65_RS18960	0.16	-0.5
4,095,041	+		DZA65_RS18960	0.17	-1.1
4,095,072	-		DZA65_RS18960	0.19	+0.1
4,095,113	-		DZA65_RS18960	0.21	+0.8
4,095,113	-		DZA65_RS18960	0.21	+0.6
4,095,146	+		DZA65_RS18960	0.23	-0.7
4,095,146	+		DZA65_RS18960	0.23	+0.1
4,095,146	+		DZA65_RS18960	0.23	-1.7
4,095,146	+		DZA65_RS18960	0.23	+1.1
4,095,147	-		DZA65_RS18960	0.23	-1.5
4,095,147	-		DZA65_RS18960	0.23	+1.1
4,095,147	-		DZA65_RS18960	0.23	+0.5
4,095,156	+		DZA65_RS18960	0.24	-0.8
4,095,156	+		DZA65_RS18960	0.24	+1.3
4,095,156	+		DZA65_RS18960	0.24	+0.5
4,095,156	+		DZA65_RS18960	0.24	-0.0
4,095,156	+		DZA65_RS18960	0.24	+1.0
4,095,156	+		DZA65_RS18960	0.24	+0.8
4,095,157	-		DZA65_RS18960	0.24	-0.7
4,095,255	+		DZA65_RS18960	0.30	-0.1
4,095,266	+		DZA65_RS18960	0.30	+0.3
4,095,266	+		DZA65_RS18960	0.30	+0.6
4,095,266	+		DZA65_RS18960	0.30	+0.0
4,095,266	+		DZA65_RS18960	0.30	+0.8
4,095,266	+		DZA65_RS18960	0.30	+0.4
4,095,266	+		DZA65_RS18960	0.30	-0.7
4,095,267	-		DZA65_RS18960	0.30	+0.9
4,095,267	-		DZA65_RS18960	0.30	-0.2
4,095,267	-		DZA65_RS18960	0.30	-0.6
4,095,267	-		DZA65_RS18960	0.30	-0.7
4,095,267	-		DZA65_RS18960	0.30	-1.3
4,095,278	+		DZA65_RS18960	0.31	+0.7
4,095,278	+		DZA65_RS18960	0.31	+0.9
4,095,278	+		DZA65_RS18960	0.31	-0.0
4,095,278	+		DZA65_RS18960	0.31	-2.3
4,095,279	-		DZA65_RS18960	0.31	+1.8
4,095,359	+		DZA65_RS18960	0.36	-0.2
4,095,372	-				+0.9
4,095,387	-		DZA65_RS18960	0.38	-1.4
4,095,420	+		DZA65_RS18960	0.40	+0.4
4,095,421	-		DZA65_RS18960	0.40	-0.7
4,095,421	-		DZA65_RS18960	0.40	+0.2
4,095,421	-		DZA65_RS18960	0.40	-0.7
4,095,518	+		DZA65_RS18960	0.46	+0.8
4,095,557	+		DZA65_RS18960	0.48	-2.3
4,095,558	-		DZA65_RS18960	0.48	+0.5
4,095,614	+		DZA65_RS18960	0.52	+0.2
4,095,614	+		DZA65_RS18960	0.52	-0.3
4,095,614	+		DZA65_RS18960	0.52	-2.5
4,095,614	+		DZA65_RS18960	0.52	-0.2
4,095,618	+		DZA65_RS18960	0.52	-1.8
4,095,619	-		DZA65_RS18960	0.52	-0.1
4,095,651	+		DZA65_RS18960	0.54	+1.6
4,095,651	+		DZA65_RS18960	0.54	-0.2
4,095,651	+		DZA65_RS18960	0.54	-0.9
4,095,674	+		DZA65_RS18960	0.55	+1.1
4,095,675	-		DZA65_RS18960	0.55	+1.5
4,095,675	-		DZA65_RS18960	0.55	+0.2
4,095,729	+		DZA65_RS18960	0.59	-0.0
4,095,730	-		DZA65_RS18960	0.59	-0.8
4,095,730	-		DZA65_RS18960	0.59	+0.7
4,095,730	-		DZA65_RS18960	0.59	+0.3
4,095,732	+		DZA65_RS18960	0.59	+1.0
4,095,794	+		DZA65_RS18960	0.63	+0.4
4,095,839	+		DZA65_RS18960	0.65	-0.3
4,095,840	-		DZA65_RS18960	0.65	-0.8
4,095,840	-		DZA65_RS18960	0.65	-0.5
4,095,840	-		DZA65_RS18960	0.65	-1.1
4,095,968	+		DZA65_RS18960	0.73	+0.4
4,095,969	-		DZA65_RS18960	0.73	+0.5
4,095,969	-		DZA65_RS18960	0.73	-0.5
4,096,052	+		DZA65_RS18960	0.78	-0.8
4,096,253	-				+1.2
4,096,293	+				+0.5
4,096,293	+				-1.4
4,096,294	-				-1.1
4,096,295	+				-0.4
4,096,298	+				+0.8
4,096,299	-				+0.3
4,096,314	-				-1.2
4,096,335	+				-0.9
4,096,364	+				-0.7
4,096,429	+				-0.1
4,096,436	-				+0.3
4,096,436	-				-0.1
4,096,436	-				-0.0
4,096,436	-				+0.3
4,096,436	-				+0.0
4,096,438	-				-0.4
4,096,438	-				+1.0
4,096,449	-				+0.7
4,096,570	-				+1.0
4,096,577	+				+0.5
4,096,578	-				+0.2
4,096,578	-				-0.5
4,096,633	+				+0.7
4,096,633	+				-0.3
4,096,633	+				+0.6
4,096,633	+				+1.3
4,096,633	+				+1.6
4,096,633	+				-0.8
4,096,633	+				+0.3
4,096,633	+				-0.7
4,096,634	-				+0.9
4,096,634	-				+0.5
4,096,634	-				+1.0
4,096,634	-				+0.5
4,096,634	-				-0.5
4,096,683	+				+0.5
4,096,684	-				-0.3
4,096,689	-				-0.3
4,096,709	+				-1.5
4,096,710	-				+0.9
4,096,728	+				-1.4
4,096,734	-				+0.5
4,096,734	-				-2.1
4,096,739	+				+0.5
4,096,740	-				+0.1
4,096,746	+				+0.2
4,096,749	+				-0.7
4,096,767	+				-1.0
4,096,798	-				-0.5
4,096,800	+				-2.3
4,096,823	-				+0.1
4,096,823	-				+2.1
4,096,823	-				-1.2
4,096,823	-				-1.4
4,096,824	+				-1.5
4,096,824	+				-0.9
4,096,824	+				-0.8
4,096,824	+				-0.1
4,096,824	+				+0.7
4,096,824	+				-0.3
4,096,824	+				-0.6
4,096,825	-				-0.5
4,096,825	-				-0.5
4,096,825	-				-1.8
4,096,825	-				+0.7
4,096,825	-				+0.7
4,096,827	-				-0.2
4,096,827	-				-0.0
4,096,835	+				-1.0
4,096,835	+				+0.5
4,096,836	-				-0.5
4,096,854	+				+0.1
4,096,854	+				-3.4
4,096,855	-				+1.5
4,096,855	-				-2.3
4,096,885	-				+1.1
4,096,885	-				-0.1
4,096,896	+				-0.8
4,096,911	+				+0.8
4,096,912	-				-0.6
4,096,930	+				+0.2
4,096,930	+				-2.5
4,096,930	+				+0.5
4,096,930	+				-0.3
4,096,931	-				-0.1
4,096,942	+				+0.3
4,096,942	+				+1.5
4,096,943	-				-0.2
4,096,943	-				+0.6
4,096,946	+				+0.8
4,096,946	+				-0.6
4,096,946	+				+1.0
4,096,946	+				-0.3
4,096,946	+				+0.4
4,096,946	+				+0.5
4,096,946	+				-0.7
4,096,946	+				-0.5
4,096,946	+				-0.0
4,096,946	+				-0.1
4,096,946	+				-2.0
4,096,947	-				-0.8
4,096,947	-				+0.5
4,096,947	-				-0.1
4,096,947	-				+0.3
4,096,947	-				-0.8
4,096,947	-				-1.5
4,096,947	-				-0.3
4,096,947	-				+0.3
4,096,947	-				-0.8
4,096,947	-				+0.8
4,096,947	-				-0.5
4,096,947	-				-0.3
4,096,947	-				+0.2
4,096,947	-				+0.6
4,096,947	-				-0.7
4,096,947	-				-0.2
4,096,958	+				+1.7
4,096,958	+				-0.8
4,096,958	+				-3.0
4,096,959	-				-0.0
4,096,959	-				-0.5
4,096,962	+				+1.4
4,096,963	-				-0.3
4,097,036	-		DZA65_RS18965	0.24	+1.9
4,097,036	-		DZA65_RS18965	0.24	+0.1
4,097,036	-		DZA65_RS18965	0.24	+1.9
4,097,036	-		DZA65_RS18965	0.24	+0.9
4,097,038	+		DZA65_RS18965	0.24	+0.1
4,097,038	+		DZA65_RS18965	0.24	-1.4
4,097,038	+		DZA65_RS18965	0.24	-0.6
4,097,038	+		DZA65_RS18965	0.24	-2.8
4,097,038	+		DZA65_RS18965	0.24	-3.2
4,097,038	+		DZA65_RS18965	0.24	-0.2
4,097,038	+		DZA65_RS18965	0.24	+2.3
4,097,039	-		DZA65_RS18965	0.25	+1.5
4,097,039	-		DZA65_RS18965	0.25	-2.5
4,097,039	-		DZA65_RS18965	0.25	+0.5
4,097,125	+		DZA65_RS18965	0.48	-0.9
4,097,125	+		DZA65_RS18965	0.48	+0.2
4,097,125	+		DZA65_RS18965	0.48	+0.5
4,097,125	+		DZA65_RS18965	0.48	-0.1
4,097,126	-		DZA65_RS18965	0.48	+1.2
4,097,126	-		DZA65_RS18965	0.48	+0.5
4,097,305	+				+1.2
4,097,306	-				+0.5
4,097,306	-				-0.1
4,097,306	-				+1.7
4,097,345	+				+0.3
4,097,356	+				-0.6
4,097,356	+				-1.3
4,097,356	+				-0.5
4,097,356	+				-1.1
4,097,356	+				+1.9
4,097,356	+				-0.7
4,097,356	+				-0.2
4,097,356	+				+0.6
4,097,357	-				+0.9
4,097,357	-				-0.6
4,097,357	-				-0.6
4,097,357	-				-0.5