Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS18695 and DZA65_RS18700 are separated by 16 nucleotides DZA65_RS18700 and DZA65_RS18705 overlap by 4 nucleotides
DZA65_RS18695: DZA65_RS18695 - type I-F CRISPR-associated protein Csy3, at 4,026,266 to 4,027,273
_RS18695
DZA65_RS18700: DZA65_RS18700 - type I-F CRISPR-associated protein Csy2, at 4,027,290 to 4,028,243
_RS18700
DZA65_RS18705: DZA65_RS18705 - type I-F CRISPR-associated protein Csy1, at 4,028,240 to 4,029,577
_RS18705
Position (kb) 4027
4028
4029 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.319 kb on - strand at 4026.319 kb on - strand at 4026.365 kb on - strand at 4026.378 kb on + strand, within DZA65_RS18695 at 4026.378 kb on + strand, within DZA65_RS18695 at 4026.379 kb on - strand, within DZA65_RS18695 at 4026.392 kb on - strand, within DZA65_RS18695 at 4026.552 kb on + strand, within DZA65_RS18695 at 4026.750 kb on + strand, within DZA65_RS18695 at 4026.778 kb on + strand, within DZA65_RS18695 at 4026.794 kb on + strand, within DZA65_RS18695 at 4026.795 kb on - strand, within DZA65_RS18695 at 4026.795 kb on - strand, within DZA65_RS18695 at 4026.904 kb on - strand, within DZA65_RS18695 at 4026.950 kb on - strand, within DZA65_RS18695 at 4026.950 kb on - strand, within DZA65_RS18695 at 4026.950 kb on - strand, within DZA65_RS18695 at 4026.991 kb on + strand, within DZA65_RS18695 at 4026.991 kb on + strand, within DZA65_RS18695 at 4026.991 kb on + strand, within DZA65_RS18695 at 4027.273 kb on + strand at 4027.273 kb on + strand at 4027.279 kb on + strand at 4027.279 kb on + strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.294 kb on + strand at 4027.294 kb on + strand at 4027.295 kb on - strand at 4027.327 kb on - strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.393 kb on + strand, within DZA65_RS18700 at 4027.393 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.574 kb on - strand, within DZA65_RS18700 at 4027.639 kb on + strand, within DZA65_RS18700 at 4027.640 kb on - strand, within DZA65_RS18700 at 4027.640 kb on - strand, within DZA65_RS18700 at 4027.640 kb on - strand, within DZA65_RS18700 at 4027.740 kb on + strand, within DZA65_RS18700 at 4027.741 kb on - strand, within DZA65_RS18700 at 4027.819 kb on - strand, within DZA65_RS18700 at 4028.100 kb on + strand, within DZA65_RS18700 at 4028.101 kb on - strand, within DZA65_RS18700 at 4028.176 kb on + strand at 4028.176 kb on + strand at 4028.176 kb on + strand at 4028.177 kb on - strand at 4028.177 kb on - strand at 4028.177 kb on - strand at 4028.217 kb on - strand at 4028.217 kb on - strand at 4028.217 kb on - strand at 4028.217 kb on - strand at 4028.290 kb on + strand at 4028.290 kb on + strand at 4028.290 kb on + strand at 4028.291 kb on - strand at 4028.306 kb on - strand at 4028.306 kb on - strand at 4028.367 kb on - strand at 4028.482 kb on + strand, within DZA65_RS18705 at 4028.482 kb on + strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.542 kb on - strand, within DZA65_RS18705 at 4028.542 kb on - strand, within DZA65_RS18705 at 4028.542 kb on - strand, within DZA65_RS18705 at 4028.574 kb on + strand, within DZA65_RS18705 at 4028.574 kb on + strand, within DZA65_RS18705 at 4028.645 kb on - strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.662 kb on - strand, within DZA65_RS18705 at 4028.662 kb on - strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.800 kb on + strand, within DZA65_RS18705 at 4028.801 kb on - strand, within DZA65_RS18705 at 4028.824 kb on + strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.847 kb on + strand, within DZA65_RS18705 at 4028.934 kb on - strand, within DZA65_RS18705 at 4028.934 kb on - strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.971 kb on - strand, within DZA65_RS18705 at 4028.971 kb on - strand, within DZA65_RS18705 at 4028.981 kb on + strand, within DZA65_RS18705 at 4028.981 kb on + strand, within DZA65_RS18705 at 4028.982 kb on - strand, within DZA65_RS18705 at 4028.982 kb on - strand, within DZA65_RS18705 at 4028.991 kb on + strand, within DZA65_RS18705 at 4028.991 kb on + strand, within DZA65_RS18705 at 4028.991 kb on + strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.016 kb on - strand, within DZA65_RS18705 at 4029.016 kb on - strand, within DZA65_RS18705 at 4029.016 kb on - strand, within DZA65_RS18705 at 4029.025 kb on + strand, within DZA65_RS18705 at 4029.026 kb on - strand, within DZA65_RS18705 at 4029.146 kb on + strand, within DZA65_RS18705 at 4029.146 kb on + strand, within DZA65_RS18705 at 4029.147 kb on - strand, within DZA65_RS18705 at 4029.230 kb on + strand, within DZA65_RS18705 at 4029.231 kb on - strand, within DZA65_RS18705 at 4029.231 kb on - strand, within DZA65_RS18705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,026,318 + +0.3 4,026,318 + +0.4 4,026,318 + -0.2 4,026,318 + +0.0 4,026,318 + -0.2 4,026,318 + -0.2 4,026,318 + +2.4 4,026,318 + +1.1 4,026,318 + -0.0 4,026,318 + -1.6 4,026,318 + -0.4 4,026,318 + +1.5 4,026,318 + -0.6 4,026,318 + -0.7 4,026,319 - -0.4 4,026,319 - -0.8 4,026,365 - +1.3 4,026,378 + DZA65_RS18695 0.11 +0.1 4,026,378 + DZA65_RS18695 0.11 +1.1 4,026,379 - DZA65_RS18695 0.11 +1.1 4,026,392 - DZA65_RS18695 0.12 +1.0 4,026,552 + DZA65_RS18695 0.28 -0.5 4,026,750 + DZA65_RS18695 0.48 +0.9 4,026,778 + DZA65_RS18695 0.51 -1.7 4,026,794 + DZA65_RS18695 0.52 +0.7 4,026,795 - DZA65_RS18695 0.52 +0.5 4,026,795 - DZA65_RS18695 0.52 -1.2 4,026,904 - DZA65_RS18695 0.63 +0.7 4,026,950 - DZA65_RS18695 0.68 -0.5 4,026,950 - DZA65_RS18695 0.68 +0.2 4,026,950 - DZA65_RS18695 0.68 +0.2 4,026,991 + DZA65_RS18695 0.72 +0.6 4,026,991 + DZA65_RS18695 0.72 -0.2 4,026,991 + DZA65_RS18695 0.72 +2.0 4,027,273 + +0.3 4,027,273 + +0.8 4,027,279 + -0.4 4,027,279 + -0.8 4,027,280 - +0.0 4,027,280 - -0.0 4,027,280 - -0.5 4,027,280 - +0.5 4,027,280 - -0.7 4,027,294 + +0.0 4,027,294 + -0.3 4,027,295 - -0.5 4,027,327 - +0.2 4,027,366 + +0.2 4,027,366 + +0.5 4,027,366 + +0.3 4,027,366 + -0.8 4,027,366 + -0.5 4,027,366 + -0.5 4,027,366 + -0.5 4,027,367 - -0.1 4,027,367 - -0.4 4,027,367 - +0.0 4,027,367 - -0.6 4,027,367 - -0.1 4,027,393 + DZA65_RS18700 0.11 -0.3 4,027,393 + DZA65_RS18700 0.11 -0.4 4,027,462 + DZA65_RS18700 0.18 +0.2 4,027,462 + DZA65_RS18700 0.18 +1.5 4,027,462 + DZA65_RS18700 0.18 +0.5 4,027,462 + DZA65_RS18700 0.18 +0.8 4,027,463 - DZA65_RS18700 0.18 -0.5 4,027,463 - DZA65_RS18700 0.18 -0.5 4,027,463 - DZA65_RS18700 0.18 -0.3 4,027,463 - DZA65_RS18700 0.18 -0.5 4,027,463 - DZA65_RS18700 0.18 +0.5 4,027,528 + DZA65_RS18700 0.25 -0.6 4,027,528 + DZA65_RS18700 0.25 +0.6 4,027,528 + DZA65_RS18700 0.25 -0.3 4,027,528 + DZA65_RS18700 0.25 -0.4 4,027,528 + DZA65_RS18700 0.25 -0.7 4,027,528 + DZA65_RS18700 0.25 -0.9 4,027,528 + DZA65_RS18700 0.25 +0.7 4,027,528 + DZA65_RS18700 0.25 -0.0 4,027,528 + DZA65_RS18700 0.25 -0.1 4,027,528 + DZA65_RS18700 0.25 -0.2 4,027,529 - DZA65_RS18700 0.25 -0.4 4,027,529 - DZA65_RS18700 0.25 +1.0 4,027,529 - DZA65_RS18700 0.25 -2.9 4,027,529 - DZA65_RS18700 0.25 -1.1 4,027,529 - DZA65_RS18700 0.25 -0.6 4,027,529 - DZA65_RS18700 0.25 +0.9 4,027,529 - DZA65_RS18700 0.25 -3.0 4,027,529 - DZA65_RS18700 0.25 +0.1 4,027,529 - DZA65_RS18700 0.25 -1.6 4,027,529 - DZA65_RS18700 0.25 +0.5 4,027,529 - DZA65_RS18700 0.25 -0.9 4,027,529 - DZA65_RS18700 0.25 +0.1 4,027,529 - DZA65_RS18700 0.25 +0.2 4,027,529 - DZA65_RS18700 0.25 -0.1 4,027,574 - DZA65_RS18700 0.30 +0.1 4,027,639 + DZA65_RS18700 0.37 +0.1 4,027,640 - DZA65_RS18700 0.37 -2.7 4,027,640 - DZA65_RS18700 0.37 -0.4 4,027,640 - DZA65_RS18700 0.37 +0.1 4,027,740 + DZA65_RS18700 0.47 +0.0 4,027,741 - DZA65_RS18700 0.47 +0.3 4,027,819 - DZA65_RS18700 0.55 -0.1 4,028,100 + DZA65_RS18700 0.85 -1.3 4,028,101 - DZA65_RS18700 0.85 +0.2 4,028,176 + +0.4 4,028,176 + +0.4 4,028,176 + +0.0 4,028,177 - -0.3 4,028,177 - -0.0 4,028,177 - -0.3 4,028,217 - +0.7 4,028,217 - -0.2 4,028,217 - -0.3 4,028,217 - +0.5 4,028,290 + +1.1 4,028,290 + -0.9 4,028,290 + +0.3 4,028,291 - +0.5 4,028,306 - -0.2 4,028,306 - -1.8 4,028,367 - +0.1 4,028,482 + DZA65_RS18705 0.18 +0.5 4,028,482 + DZA65_RS18705 0.18 +0.1 4,028,483 - DZA65_RS18705 0.18 -1.0 4,028,483 - DZA65_RS18705 0.18 +0.3 4,028,483 - DZA65_RS18705 0.18 -0.6 4,028,483 - DZA65_RS18705 0.18 -0.2 4,028,483 - DZA65_RS18705 0.18 -0.5 4,028,483 - DZA65_RS18705 0.18 -1.1 4,028,483 - DZA65_RS18705 0.18 -1.6 4,028,483 - DZA65_RS18705 0.18 +0.2 4,028,542 - DZA65_RS18705 0.23 +0.2 4,028,542 - DZA65_RS18705 0.23 +1.0 4,028,542 - DZA65_RS18705 0.23 +0.1 4,028,574 + DZA65_RS18705 0.25 -0.5 4,028,574 + DZA65_RS18705 0.25 -0.2 4,028,645 - DZA65_RS18705 0.30 -1.8 4,028,661 + DZA65_RS18705 0.31 -0.0 4,028,661 + DZA65_RS18705 0.31 +0.3 4,028,661 + DZA65_RS18705 0.31 +0.1 4,028,661 + DZA65_RS18705 0.31 +0.5 4,028,662 - DZA65_RS18705 0.32 -0.1 4,028,662 - DZA65_RS18705 0.32 -1.8 4,028,763 + DZA65_RS18705 0.39 -0.4 4,028,763 + DZA65_RS18705 0.39 +1.5 4,028,763 + DZA65_RS18705 0.39 +0.2 4,028,763 + DZA65_RS18705 0.39 +0.3 4,028,763 + DZA65_RS18705 0.39 -0.2 4,028,763 + DZA65_RS18705 0.39 +1.0 4,028,764 - DZA65_RS18705 0.39 +0.8 4,028,764 - DZA65_RS18705 0.39 -1.5 4,028,764 - DZA65_RS18705 0.39 +0.7 4,028,764 - DZA65_RS18705 0.39 -0.2 4,028,764 - DZA65_RS18705 0.39 +0.1 4,028,764 - DZA65_RS18705 0.39 +1.6 4,028,800 + DZA65_RS18705 0.42 +1.3 4,028,801 - DZA65_RS18705 0.42 -0.2 4,028,824 + DZA65_RS18705 0.44 -1.5 4,028,840 - DZA65_RS18705 0.45 +0.1 4,028,840 - DZA65_RS18705 0.45 -0.7 4,028,840 - DZA65_RS18705 0.45 -0.5 4,028,840 - DZA65_RS18705 0.45 +0.2 4,028,847 + DZA65_RS18705 0.45 +0.0 4,028,934 - DZA65_RS18705 0.52 +0.1 4,028,934 - DZA65_RS18705 0.52 +0.2 4,028,970 + DZA65_RS18705 0.55 -0.8 4,028,970 + DZA65_RS18705 0.55 +0.1 4,028,970 + DZA65_RS18705 0.55 -0.0 4,028,970 + DZA65_RS18705 0.55 -2.5 4,028,971 - DZA65_RS18705 0.55 -0.9 4,028,971 - DZA65_RS18705 0.55 +0.4 4,028,981 + DZA65_RS18705 0.55 +0.5 4,028,981 + DZA65_RS18705 0.55 +0.2 4,028,982 - DZA65_RS18705 0.55 -0.2 4,028,982 - DZA65_RS18705 0.55 -0.2 4,028,991 + DZA65_RS18705 0.56 +0.1 4,028,991 + DZA65_RS18705 0.56 +0.2 4,028,991 + DZA65_RS18705 0.56 -1.3 4,028,992 - DZA65_RS18705 0.56 -0.2 4,028,992 - DZA65_RS18705 0.56 -0.3 4,028,992 - DZA65_RS18705 0.56 +0.2 4,028,992 - DZA65_RS18705 0.56 +0.5 4,028,992 - DZA65_RS18705 0.56 +0.1 4,029,015 + DZA65_RS18705 0.58 -0.3 4,029,015 + DZA65_RS18705 0.58 -0.4 4,029,015 + DZA65_RS18705 0.58 +0.5 4,029,015 + DZA65_RS18705 0.58 -2.5 4,029,015 + DZA65_RS18705 0.58 +0.4 4,029,015 + DZA65_RS18705 0.58 +0.2 4,029,015 + DZA65_RS18705 0.58 -0.1 4,029,016 - DZA65_RS18705 0.58 +0.3 4,029,016 - DZA65_RS18705 0.58 -0.5 4,029,016 - DZA65_RS18705 0.58 +0.1 4,029,025 + DZA65_RS18705 0.59 -1.0 4,029,026 - DZA65_RS18705 0.59 -2.9 4,029,146 + DZA65_RS18705 0.68 -1.7 4,029,146 + DZA65_RS18705 0.68 -0.5 4,029,147 - DZA65_RS18705 0.68 +0.1 4,029,230 + DZA65_RS18705 0.74 -0.3 4,029,231 - DZA65_RS18705 0.74 +0.4 4,029,231 - DZA65_RS18705 0.74 -0.5
Or see this region's nucleotide sequence