Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS17345 and DZA65_RS17350 are separated by 112 nucleotides DZA65_RS17350 and DZA65_RS17355 are separated by 27 nucleotides
DZA65_RS17345: DZA65_RS17345 - bifunctional chorismate mutase/prephenate dehydratase, at 3,739,473 to 3,740,630
_RS17345
DZA65_RS17350: DZA65_RS17350 - bifunctional chorismate mutase/prephenate dehydrogenase, at 3,740,743 to 3,741,861
_RS17350
DZA65_RS17355: DZA65_RS17355 - 3-deoxy-7-phosphoheptulonate synthase, at 3,741,889 to 3,742,953
_RS17355
Position (kb)
3740
3741
3742 Strain fitness (log2 ratio)
-1
0
1
2 at 3739.812 kb on + strand, within DZA65_RS17345 at 3739.812 kb on + strand, within DZA65_RS17345 at 3739.813 kb on - strand, within DZA65_RS17345 at 3739.813 kb on - strand, within DZA65_RS17345 at 3739.813 kb on - strand, within DZA65_RS17345 at 3739.837 kb on - strand, within DZA65_RS17345 at 3739.862 kb on + strand, within DZA65_RS17345 at 3739.863 kb on - strand, within DZA65_RS17345 at 3739.863 kb on - strand, within DZA65_RS17345 at 3739.863 kb on - strand, within DZA65_RS17345 at 3739.977 kb on + strand, within DZA65_RS17345 at 3739.977 kb on + strand, within DZA65_RS17345 at 3739.977 kb on + strand, within DZA65_RS17345 at 3739.977 kb on + strand, within DZA65_RS17345 at 3739.977 kb on + strand, within DZA65_RS17345 at 3739.978 kb on - strand, within DZA65_RS17345 at 3739.978 kb on - strand, within DZA65_RS17345 at 3739.978 kb on - strand, within DZA65_RS17345 at 3740.024 kb on + strand, within DZA65_RS17345 at 3740.024 kb on + strand, within DZA65_RS17345 at 3740.024 kb on + strand, within DZA65_RS17345 at 3740.024 kb on + strand, within DZA65_RS17345 at 3740.025 kb on - strand, within DZA65_RS17345 at 3740.025 kb on - strand, within DZA65_RS17345 at 3740.025 kb on - strand, within DZA65_RS17345 at 3740.030 kb on + strand, within DZA65_RS17345 at 3740.031 kb on - strand, within DZA65_RS17345 at 3740.061 kb on - strand, within DZA65_RS17345 at 3740.088 kb on + strand, within DZA65_RS17345 at 3740.089 kb on - strand, within DZA65_RS17345 at 3740.181 kb on - strand, within DZA65_RS17345 at 3740.250 kb on + strand, within DZA65_RS17345 at 3740.251 kb on - strand, within DZA65_RS17345 at 3740.282 kb on + strand, within DZA65_RS17345 at 3740.314 kb on + strand, within DZA65_RS17345 at 3740.314 kb on + strand, within DZA65_RS17345 at 3740.314 kb on + strand, within DZA65_RS17345 at 3740.314 kb on + strand, within DZA65_RS17345 at 3740.315 kb on - strand, within DZA65_RS17345 at 3740.315 kb on - strand, within DZA65_RS17345 at 3740.315 kb on - strand, within DZA65_RS17345 at 3740.357 kb on + strand, within DZA65_RS17345 at 3740.368 kb on + strand, within DZA65_RS17345 at 3740.368 kb on + strand, within DZA65_RS17345 at 3740.369 kb on - strand, within DZA65_RS17345 at 3740.369 kb on - strand, within DZA65_RS17345 at 3740.369 kb on - strand, within DZA65_RS17345 at 3740.496 kb on + strand, within DZA65_RS17345 at 3740.496 kb on + strand, within DZA65_RS17345 at 3740.496 kb on + strand, within DZA65_RS17345 at 3740.497 kb on - strand, within DZA65_RS17345 at 3740.497 kb on - strand, within DZA65_RS17345 at 3740.497 kb on - strand, within DZA65_RS17345 at 3740.497 kb on - strand at 3740.499 kb on - strand, within DZA65_RS17345 at 3740.499 kb on - strand, within DZA65_RS17345 at 3740.499 kb on - strand at 3740.537 kb on + strand at 3740.546 kb on - strand at 3740.561 kb on + strand at 3740.562 kb on - strand at 3740.562 kb on - strand at 3740.593 kb on - strand at 3740.640 kb on + strand at 3740.679 kb on + strand at 3740.680 kb on - strand at 3740.717 kb on - strand at 3740.717 kb on - strand at 3740.717 kb on - strand at 3740.730 kb on - strand at 3740.741 kb on + strand at 3740.744 kb on + strand at 3740.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,739,812 + DZA65_RS17345 0.29 +0.1 3,739,812 + DZA65_RS17345 0.29 -1.5 3,739,813 - DZA65_RS17345 0.29 +0.6 3,739,813 - DZA65_RS17345 0.29 +0.5 3,739,813 - DZA65_RS17345 0.29 +0.5 3,739,837 - DZA65_RS17345 0.31 +0.2 3,739,862 + DZA65_RS17345 0.34 -1.1 3,739,863 - DZA65_RS17345 0.34 -1.6 3,739,863 - DZA65_RS17345 0.34 -0.5 3,739,863 - DZA65_RS17345 0.34 -0.0 3,739,977 + DZA65_RS17345 0.44 +0.3 3,739,977 + DZA65_RS17345 0.44 +0.2 3,739,977 + DZA65_RS17345 0.44 +0.3 3,739,977 + DZA65_RS17345 0.44 -0.9 3,739,977 + DZA65_RS17345 0.44 +1.2 3,739,978 - DZA65_RS17345 0.44 +0.4 3,739,978 - DZA65_RS17345 0.44 +0.2 3,739,978 - DZA65_RS17345 0.44 +0.1 3,740,024 + DZA65_RS17345 0.48 +0.9 3,740,024 + DZA65_RS17345 0.48 +0.5 3,740,024 + DZA65_RS17345 0.48 +0.5 3,740,024 + DZA65_RS17345 0.48 -0.4 3,740,025 - DZA65_RS17345 0.48 +0.3 3,740,025 - DZA65_RS17345 0.48 +1.5 3,740,025 - DZA65_RS17345 0.48 -0.4 3,740,030 + DZA65_RS17345 0.48 +0.5 3,740,031 - DZA65_RS17345 0.48 +1.8 3,740,061 - DZA65_RS17345 0.51 -0.4 3,740,088 + DZA65_RS17345 0.53 +0.5 3,740,089 - DZA65_RS17345 0.53 -0.5 3,740,181 - DZA65_RS17345 0.61 +1.0 3,740,250 + DZA65_RS17345 0.67 -0.9 3,740,251 - DZA65_RS17345 0.67 +0.5 3,740,282 + DZA65_RS17345 0.70 +0.3 3,740,314 + DZA65_RS17345 0.73 -1.1 3,740,314 + DZA65_RS17345 0.73 +0.8 3,740,314 + DZA65_RS17345 0.73 +0.0 3,740,314 + DZA65_RS17345 0.73 +1.7 3,740,315 - DZA65_RS17345 0.73 -0.5 3,740,315 - DZA65_RS17345 0.73 +0.3 3,740,315 - DZA65_RS17345 0.73 +0.5 3,740,357 + DZA65_RS17345 0.76 -1.1 3,740,368 + DZA65_RS17345 0.77 -0.3 3,740,368 + DZA65_RS17345 0.77 -1.4 3,740,369 - DZA65_RS17345 0.77 -1.1 3,740,369 - DZA65_RS17345 0.77 -0.5 3,740,369 - DZA65_RS17345 0.77 -1.4 3,740,496 + DZA65_RS17345 0.88 +0.1 3,740,496 + DZA65_RS17345 0.88 +1.7 3,740,496 + DZA65_RS17345 0.88 -0.3 3,740,497 - DZA65_RS17345 0.88 -1.1 3,740,497 - DZA65_RS17345 0.88 -0.0 3,740,497 - DZA65_RS17345 0.88 +1.7 3,740,497 - +1.0 3,740,499 - DZA65_RS17345 0.89 -0.9 3,740,499 - DZA65_RS17345 0.89 -1.3 3,740,499 - +2.0 3,740,537 + -0.1 3,740,546 - +0.6 3,740,561 + -1.5 3,740,562 - +0.5 3,740,562 - +0.2 3,740,593 - -0.4 3,740,640 + +0.9 3,740,679 + -0.1 3,740,680 - -0.4 3,740,717 - +0.3 3,740,717 - +0.5 3,740,717 - +0.0 3,740,730 - +0.2 3,740,741 + -1.0 3,740,744 + -0.1 3,740,751 + -0.2
Or see this region's nucleotide sequence