Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16100

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,486,451	+				+0.0
3,486,514	+				-0.4
3,486,549	+				-0.2
3,486,554	+				+0.2
3,486,554	+				+2.2
3,486,554	+				+0.1
3,486,555	-				+1.4
3,486,574	-				-1.2
3,486,574	-				-2.2
3,486,584	+				-1.5
3,486,584	+				-0.2
3,486,584	+				-1.8
3,486,584	+				-1.9
3,486,584	+				-0.1
3,486,584	+				-0.2
3,486,584	+				+0.6
3,486,584	+				+0.4
3,486,584	+				+0.2
3,486,584	+				-2.6
3,486,584	+				-1.0
3,486,584	+				-1.2
3,486,585	-				-0.8
3,486,585	-				-0.7
3,486,585	-				+0.4
3,486,585	-				-1.2
3,486,585	-				+0.2
3,486,589	+				-1.1
3,486,590	-				-1.8
3,486,590	-				-1.4
3,486,590	-				-0.1
3,486,590	-				+0.2
3,486,630	+		DZA65_RS16090	0.14	-0.3
3,486,837	+		DZA65_RS16090	0.76	-3.9
3,486,946	-				-1.9
3,486,991	-		DZA65_RS16095	0.22	+2.3
3,487,033	+		DZA65_RS16095	0.37	-0.7
3,487,034	-		DZA65_RS16095	0.37	+0.5
3,487,045	+		DZA65_RS16095	0.41	-1.9
3,487,046	-		DZA65_RS16095	0.41	-0.6
3,487,046	-		DZA65_RS16095	0.41	-0.1
3,487,106	+		DZA65_RS16095	0.63	-1.2
3,487,106	+		DZA65_RS16095	0.63	+0.3
3,487,107	-		DZA65_RS16095	0.63	-0.7
3,487,107	-		DZA65_RS16095	0.63	+1.4
3,487,148	+		DZA65_RS16095	0.78	-0.5
3,487,179	-		DZA65_RS16095	0.89	-0.4
3,487,192	+				+1.7
3,487,193	-				-0.6
3,487,236	-				+0.5
3,487,242	+				-0.5
3,487,242	+				-1.8
3,487,243	-				+0.2
3,487,243	-				-0.5
3,487,243	-				-0.2
3,487,288	+				-0.0
3,487,288	+				-0.2
3,487,288	+				-1.6
3,487,288	+				-0.1
3,487,288	+				-0.9
3,487,288	+				+0.2
3,487,288	+				+0.0
3,487,289	-				+1.1
3,487,289	-				+0.6
3,487,289	-				-0.0
3,487,289	-				-0.4
3,487,289	-				+0.4
3,487,291	+				-0.3
3,487,291	+				-0.1
3,487,291	+				+0.5
3,487,292	-				+0.0
3,487,292	-				+1.0
3,487,294	+				+0.5
3,487,294	+				-1.5
3,487,295	-				-0.2
3,487,295	-				+1.3
3,487,295	-				-0.2
3,487,295	-				+0.0
3,487,382	+				+0.5
3,487,382	+				+0.1
3,487,382	+				-1.0
3,487,382	+				-0.3
3,487,382	+				+0.4
3,487,383	-				-0.6
3,487,383	-				-0.9
3,487,383	-				-2.6
3,487,383	-				-1.1
3,487,383	-				-0.5
3,487,383	-				-0.7
3,487,383	-				+0.8
3,487,383	-				-0.9
3,487,383	-				-1.1
3,487,383	-				+0.4
3,487,383	-				+0.2
3,487,383	-				+0.8
3,487,387	+				-0.4
3,487,387	+				+1.0
3,487,387	+				+0.5
3,487,387	+				-1.5
3,487,387	+				+0.7
3,487,388	-				+0.4
3,487,388	-				-0.5
3,487,388	-				-0.8
3,487,388	-				+1.4
3,487,388	-				+1.1
3,487,388	-				-1.0
3,487,394	+				+0.0
3,487,394	+				+0.1
3,487,394	+				+0.6
3,487,395	-				+0.3
3,487,395	-				+2.2
3,487,413	+				-0.1
3,487,413	+				-0.7
3,487,414	-				+0.6
3,487,414	-				+0.2
3,487,414	-				+1.0
3,487,419	+				+0.1
3,487,419	+				-0.1
3,487,419	+				+0.5
3,487,419	+				-0.2
3,487,420	-				-0.3
3,487,420	-				+0.4
3,487,420	-				-0.0
3,487,425	+				+0.4
3,487,425	+				-1.3
3,487,425	+				+0.3
3,487,426	-				-1.2
3,487,456	-		DZA65_RS16100	0.13	+0.9
3,487,460	+		DZA65_RS16100	0.14	-0.6
3,487,461	-		DZA65_RS16100	0.15	+2.4
3,487,461	-		DZA65_RS16100	0.15	-1.0
3,487,461	-		DZA65_RS16100	0.15	+0.0
3,487,461	-		DZA65_RS16100	0.15	+0.3
3,487,461	-		DZA65_RS16100	0.15	+1.4
3,487,567	+		DZA65_RS16100	0.47	+0.6
3,487,608	+		DZA65_RS16100	0.60	+0.1
3,487,608	+		DZA65_RS16100	0.60	+1.3
3,487,608	+		DZA65_RS16100	0.60	-1.2
3,487,608	+		DZA65_RS16100	0.60	-0.1
3,487,608	+		DZA65_RS16100	0.60	-0.6
3,487,608	+		DZA65_RS16100	0.60	+0.7
3,487,608	+		DZA65_RS16100	0.60	-1.2
3,487,609	-		DZA65_RS16100	0.60	+1.4
3,487,609	-		DZA65_RS16100	0.60	+0.0
3,487,609	-		DZA65_RS16100	0.60	-0.8
3,487,609	-		DZA65_RS16100	0.60	-1.6
3,487,609	-		DZA65_RS16100	0.60	+0.5
3,487,609	-		DZA65_RS16100	0.60	-2.2
3,487,612	+		DZA65_RS16100	0.61	+0.7
3,487,613	-		DZA65_RS16100	0.61	-1.3
3,487,738	+				+1.1
3,487,738	+				+1.8
3,487,738	+				+0.5
3,487,738	+				+0.3
3,487,738	+				+0.1
3,487,738	+				-1.0
3,487,738	+				-0.1
3,487,739	-				-1.1
3,487,739	-				-0.8
3,487,739	-				-1.0
3,487,739	-				+0.8
3,487,739	-				+0.4
3,487,739	-				+0.6
3,487,739	-				-0.4
3,487,789	+				-0.1
3,487,789	+				-2.4
3,487,812	+				+0.2
3,487,812	+				+0.9
3,487,812	+				-1.2
3,487,812	+				-2.6
3,487,813	-				-0.4
3,487,813	-				-0.0
3,487,813	-				-0.0
3,487,983	-		DZA65_RS16105	0.33	+0.7
3,487,983	-		DZA65_RS16105	0.33	+0.2
3,487,986	+		DZA65_RS16105	0.34	+1.4
3,487,986	+		DZA65_RS16105	0.34	-0.3
3,487,986	+		DZA65_RS16105	0.34	+0.6
3,488,042	+		DZA65_RS16105	0.48	+0.7
3,488,155	+		DZA65_RS16105	0.75	-1.0
3,488,155	+		DZA65_RS16105	0.75	-0.4
3,488,240	+				-3.1
3,488,243	+				+1.2
3,488,244	-				+1.0
3,488,351	+				+0.6
3,488,351	+				+0.7
3,488,351	+				-0.2
3,488,351	+				+1.0
3,488,351	+				+0.3
3,488,351	+				+0.5
3,488,352	-				-0.8
3,488,430	-				+1.1
3,488,439	+				-0.1
3,488,440	-				+0.4
3,488,440	-				-0.7
3,488,440	-				-1.3
3,488,450	+				-1.7
3,488,451	-				-1.6
3,488,451	-				+0.0
3,488,479	+				+0.9
3,488,486	+				-0.9
3,488,487	-				-0.4
3,488,496	+				+0.4
3,488,496	+				-0.1
3,488,497	-				-1.5
3,488,497	-				-0.4
3,488,525	+				-0.6
3,488,525	+				-0.2
3,488,525	+				+0.5
3,488,525	+				-0.7
3,488,525	+				+1.5
3,488,525	+				+0.2
3,488,525	+				+0.9
3,488,525	+				+0.8
3,488,525	+				+0.4
3,488,525	+				-0.6
3,488,525	+				-0.3
3,488,525	+				+1.0
3,488,525	+				+0.7
3,488,525	+				+1.5
3,488,525	+				+0.4
3,488,525	+				-1.2
3,488,526	-				-0.3
3,488,526	-				-0.8
3,488,526	-				+0.4
3,488,526	-				-1.2
3,488,526	-				+0.1
3,488,526	-				-0.3
3,488,526	-				-1.6
3,488,526	-				+0.1
3,488,526	-				-0.1
3,488,600	-		DZA65_RS16110	0.11	+0.1
3,488,600	-		DZA65_RS16110	0.11	+0.4