Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13995

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,003,003	+		DZA65_RS13985	0.83	+0.1
3,003,003	+		DZA65_RS13985	0.83	+0.5
3,003,004	-		DZA65_RS13985	0.83	+0.9
3,003,004	-		DZA65_RS13985	0.83	+0.2
3,003,004	-		DZA65_RS13985	0.83	-0.7
3,003,004	-		DZA65_RS13985	0.83	+0.6
3,003,037	+		DZA65_RS13985	0.87	+0.2
3,003,037	+		DZA65_RS13985	0.87	+1.3
3,003,037	+		DZA65_RS13985	0.87	+0.3
3,003,038	-		DZA65_RS13985	0.87	-1.4
3,003,038	-		DZA65_RS13985	0.87	-0.1
3,003,074	+				-0.1
3,003,074	+				+0.3
3,003,075	-				+1.4
3,003,167	+				-1.2
3,003,167	+				+1.2
3,003,167	+				+0.3
3,003,167	+				-1.8
3,003,167	+				+0.8
3,003,168	-				+0.0
3,003,168	-				+0.6
3,003,168	-				+0.3
3,003,168	-				+0.4
3,003,168	-				+0.7
3,003,168	-				+0.7
3,003,168	-				-0.1
3,003,181	+				-1.3
3,003,181	+				+0.7
3,003,181	+				+0.7
3,003,182	-				+0.3
3,003,182	-				+0.1
3,003,189	+				-0.6
3,003,189	+				+0.5
3,003,189	+				+0.5
3,003,201	+				+0.4
3,003,202	-				-0.4
3,003,202	-				-0.3
3,003,202	-				+0.2
3,003,202	-				+0.6
3,003,204	+				+2.0
3,003,205	-				+2.4
3,003,205	-				+0.9
3,003,286	-		DZA65_RS13990	0.16	-1.4
3,003,286	-		DZA65_RS13990	0.16	+0.3
3,003,295	-		DZA65_RS13990	0.17	-0.1
3,003,319	+		DZA65_RS13990	0.20	+0.4
3,003,319	+		DZA65_RS13990	0.20	+0.7
3,003,319	+		DZA65_RS13990	0.20	+1.0
3,003,343	+		DZA65_RS13990	0.23	+0.9
3,003,343	+		DZA65_RS13990	0.23	-0.5
3,003,344	-		DZA65_RS13990	0.24	-0.7
3,003,344	-		DZA65_RS13990	0.24	-0.4
3,003,478	-		DZA65_RS13990	0.41	+1.9
3,003,496	-		DZA65_RS13990	0.44	+0.8
3,003,496	-		DZA65_RS13990	0.44	+1.0
3,003,609	+		DZA65_RS13990	0.59	+0.1
3,003,610	-		DZA65_RS13990	0.59	+0.8
3,003,612	+		DZA65_RS13990	0.59	+0.6
3,003,612	+				+0.9
3,003,613	-		DZA65_RS13990	0.59	+0.7
3,003,613	-		DZA65_RS13990	0.59	+0.7
3,003,613	-		DZA65_RS13990	0.59	+0.3
3,003,624	+		DZA65_RS13990	0.61	+1.8
3,003,626	+		DZA65_RS13990	0.61	-0.2
3,003,626	+		DZA65_RS13990	0.61	+2.4
3,003,627	-		DZA65_RS13990	0.61	+0.6
3,003,627	-		DZA65_RS13990	0.61	+0.9
3,003,627	-		DZA65_RS13990	0.61	+1.9
3,003,627	-		DZA65_RS13990	0.61	+0.9
3,003,627	-		DZA65_RS13990	0.61	+1.5
3,003,627	-		DZA65_RS13990	0.61	-0.7
3,003,627	-		DZA65_RS13990	0.61	-0.5
3,003,705	-		DZA65_RS13990	0.71	-0.5
3,003,705	-		DZA65_RS13990	0.71	+0.8
3,003,705	-		DZA65_RS13990	0.71	+0.9
3,003,748	+		DZA65_RS13990	0.77	+1.5
3,003,748	+		DZA65_RS13990	0.77	+0.8
3,003,749	-				+0.9
3,003,749	-		DZA65_RS13990	0.77	+1.2
3,003,759	+		DZA65_RS13990	0.78	-0.2
3,003,759	+		DZA65_RS13990	0.78	+1.6
3,003,759	+		DZA65_RS13990	0.78	+0.7
3,003,760	-		DZA65_RS13990	0.79	-0.0
3,003,760	-		DZA65_RS13990	0.79	+0.7
3,003,760	-		DZA65_RS13990	0.79	+0.7
3,003,831	+		DZA65_RS13990	0.88	-0.6
3,003,832	-		DZA65_RS13990	0.88	+0.8
3,003,859	-				+0.5
3,003,859	-				+0.4
3,003,903	+				+0.3
3,003,903	+				+0.0
3,003,903	+				-0.4
3,003,905	+				+2.1
3,003,905	+				+0.7
3,003,905	+				+0.5
3,003,905	+				+0.5
3,003,905	+				+1.9
3,003,905	+				+0.4
3,003,905	+				+0.6
3,003,905	+				-0.3
3,003,905	+				+1.3
3,003,905	+				-2.5
3,003,905	+				+0.2
3,003,906	-				+0.8
3,003,906	-				+1.0
3,003,906	-				-0.0
3,003,906	-				+1.6
3,003,906	-				-1.1
3,003,906	-				+1.6
3,003,906	-				+0.9
3,003,906	-				+1.0
3,003,906	-				-0.3
3,003,906	-				+1.1
3,003,906	-				+0.5
3,003,906	-				-0.7
3,003,906	-				-0.6
3,003,906	-				+1.3
3,003,906	-				+0.9
3,003,906	-				+0.8
3,003,906	-				+0.1
3,003,906	-				+0.8
3,003,906	-				+1.3
3,003,910	-				+0.9
3,003,910	-				-0.8
3,003,910	-				+1.6
3,003,910	-				-1.3
3,003,910	-				-0.8
3,003,927	-				+1.1
3,003,936	-				+0.3
3,003,940	+				+1.0
3,003,941	-				-2.1
3,003,941	-				+1.1
3,003,944	+				+0.8
3,003,944	+				-0.0
3,003,944	+				+0.5
3,003,944	+				+1.4
3,003,945	-				-0.1
3,003,945	-				+0.7
3,004,011	-				+0.3
3,004,011	-				+0.5
3,004,014	+				+1.2
3,004,014	+				-0.7
3,004,015	-				+0.9
3,004,015	-				-0.3
3,004,015	-				+2.3
3,004,015	-				+0.3
3,004,048	-				+1.3
3,004,048	-				+1.0
3,004,120	+		DZA65_RS13995	0.15	+0.5
3,004,120	+		DZA65_RS13995	0.15	+0.3
3,004,120	+		DZA65_RS13995	0.15	+0.3
3,004,121	-		DZA65_RS13995	0.15	+0.3
3,004,121	-		DZA65_RS13995	0.15	-0.2
3,004,121	-		DZA65_RS13995	0.15	+0.8
3,004,161	+		DZA65_RS13995	0.18	+0.5
3,004,211	-		DZA65_RS13995	0.22	+0.9
3,004,211	-		DZA65_RS13995	0.22	-1.1
3,004,211	-		DZA65_RS13995	0.22	-1.0
3,004,244	+		DZA65_RS13995	0.25	+0.4
3,004,244	+		DZA65_RS13995	0.25	+1.1
3,004,245	-		DZA65_RS13995	0.25	+0.6
3,004,254	+		DZA65_RS13995	0.26	+0.7
3,004,281	-		DZA65_RS13995	0.28	+0.8
3,004,304	+		DZA65_RS13995	0.30	+0.2
3,004,305	-		DZA65_RS13995	0.30	-0.5
3,004,305	-		DZA65_RS13995	0.30	+1.0
3,004,413	+		DZA65_RS13995	0.39	+0.9
3,004,414	-		DZA65_RS13995	0.39	+0.8
3,004,422	+		DZA65_RS13995	0.40	+1.5
3,004,422	+		DZA65_RS13995	0.40	+0.1
3,004,423	-		DZA65_RS13995	0.40	+0.2
3,004,506	+		DZA65_RS13995	0.47	-0.6
3,004,517	+		DZA65_RS13995	0.48	-0.4
3,004,518	-				+0.3
3,004,518	-		DZA65_RS13995	0.48	+1.6
3,004,518	-		DZA65_RS13995	0.48	+1.3
3,004,533	+		DZA65_RS13995	0.49	+0.5
3,004,553	+		DZA65_RS13995	0.51	+1.9
3,004,553	+		DZA65_RS13995	0.51	+0.8
3,004,553	+		DZA65_RS13995	0.51	+0.2
3,004,567	-		DZA65_RS13995	0.52	-0.5
3,004,567	-		DZA65_RS13995	0.52	+0.3
3,004,584	+		DZA65_RS13995	0.53	-0.1
3,004,584	+		DZA65_RS13995	0.53	-0.3
3,004,584	+		DZA65_RS13995	0.53	+0.8
3,004,584	+		DZA65_RS13995	0.53	+0.7
3,004,584	+		DZA65_RS13995	0.53	+0.1
3,004,584	+		DZA65_RS13995	0.53	-0.5
3,004,584	+		DZA65_RS13995	0.53	+1.5
3,004,585	-		DZA65_RS13995	0.54	+0.8
3,004,585	-		DZA65_RS13995	0.54	+1.3
3,004,585	-		DZA65_RS13995	0.54	+0.6
3,004,585	-		DZA65_RS13995	0.54	+1.0
3,004,589	+		DZA65_RS13995	0.54	+0.3
3,004,589	+		DZA65_RS13995	0.54	+1.6
3,004,589	+		DZA65_RS13995	0.54	-0.3
3,004,590	-		DZA65_RS13995	0.54	+0.8
3,004,590	-		DZA65_RS13995	0.54	+0.4
3,004,590	-		DZA65_RS13995	0.54	-0.0
3,004,590	-		DZA65_RS13995	0.54	+0.2
3,004,590	-		DZA65_RS13995	0.54	-0.2
3,004,590	-		DZA65_RS13995	0.54	+0.5
3,004,590	-		DZA65_RS13995	0.54	+0.9
3,004,590	-		DZA65_RS13995	0.54	+1.6
3,004,590	-		DZA65_RS13995	0.54	-0.2
3,004,590	-		DZA65_RS13995	0.54	+0.3
3,004,599	+		DZA65_RS13995	0.55	+0.9
3,004,600	-		DZA65_RS13995	0.55	-0.0
3,004,600	-		DZA65_RS13995	0.55	+0.4
3,004,600	-		DZA65_RS13995	0.55	+0.3
3,004,608	+		DZA65_RS13995	0.55	-0.2
3,004,608	+		DZA65_RS13995	0.55	+0.6
3,004,608	+		DZA65_RS13995	0.55	+0.4
3,004,609	-		DZA65_RS13995	0.56	-0.1
3,004,610	+		DZA65_RS13995	0.56	+1.3
3,004,610	+		DZA65_RS13995	0.56	-0.1
3,004,610	+		DZA65_RS13995	0.56	+0.2
3,004,610	+		DZA65_RS13995	0.56	+0.9
3,004,610	+		DZA65_RS13995	0.56	+1.0
3,004,610	+		DZA65_RS13995	0.56	+0.4
3,004,610	+		DZA65_RS13995	0.56	+0.3
3,004,611	-		DZA65_RS13995	0.56	-0.2
3,004,611	-		DZA65_RS13995	0.56	+0.8
3,004,611	-		DZA65_RS13995	0.56	+0.7
3,004,611	-		DZA65_RS13995	0.56	+0.4
3,004,611	-		DZA65_RS13995	0.56	+0.6
3,004,611	-		DZA65_RS13995	0.56	-1.2
3,004,611	-		DZA65_RS13995	0.56	-0.4
3,004,620	+		DZA65_RS13995	0.56	+0.8
3,004,620	+		DZA65_RS13995	0.56	+1.5
3,004,620	+		DZA65_RS13995	0.56	+1.1
3,004,620	+		DZA65_RS13995	0.56	+0.3
3,004,621	-		DZA65_RS13995	0.56	+1.0
3,004,621	-		DZA65_RS13995	0.56	-1.1
3,004,621	-		DZA65_RS13995	0.56	+0.7
3,004,621	-		DZA65_RS13995	0.56	+1.4
3,004,812	+		DZA65_RS13995	0.72	+0.0
3,004,813	-		DZA65_RS13995	0.72	+0.9
3,004,813	-		DZA65_RS13995	0.72	+0.3
3,004,816	-		DZA65_RS13995	0.73	+1.8
3,004,862	+		DZA65_RS13995	0.77	+0.4
3,004,863	-		DZA65_RS13995	0.77	-2.9
3,004,863	-		DZA65_RS13995	0.77	+1.7
3,004,881	+		DZA65_RS13995	0.78	+1.1
3,004,895	+		DZA65_RS13995	0.79	+1.0
3,004,895	+		DZA65_RS13995	0.79	+1.1
3,004,938	+		DZA65_RS13995	0.83	+0.7
3,004,938	+		DZA65_RS13995	0.83	-0.0
3,004,938	+		DZA65_RS13995	0.83	+0.5
3,004,938	+		DZA65_RS13995	0.83	+1.1
3,004,938	+		DZA65_RS13995	0.83	-0.7
3,004,939	-		DZA65_RS13995	0.83	-0.0
3,004,939	-		DZA65_RS13995	0.83	+0.9
3,004,939	-		DZA65_RS13995	0.83	+1.6
3,004,947	+		DZA65_RS13995	0.84	+0.5
3,004,947	+		DZA65_RS13995	0.84	+0.0
3,004,948	-		DZA65_RS13995	0.84	+0.9
3,004,948	-		DZA65_RS13995	0.84	+1.4
3,004,948	-		DZA65_RS13995	0.84	+0.6
3,004,948	-		DZA65_RS13995	0.84	-0.4
3,004,973	-		DZA65_RS13995	0.86	+1.3
3,004,999	+		DZA65_RS13995	0.88	+0.6
3,004,999	+		DZA65_RS13995	0.88	+0.8
3,004,999	+		DZA65_RS13995	0.88	+0.7
3,005,000	-		DZA65_RS13995	0.88	+0.9
3,005,000	-		DZA65_RS13995	0.88	+0.3
3,005,000	-		DZA65_RS13995	0.88	+1.6
3,005,015	+		DZA65_RS13995	0.89	+3.0
3,005,015	+		DZA65_RS13995	0.89	+1.9
3,005,015	+		DZA65_RS13995	0.89	+0.9
3,005,015	+		DZA65_RS13995	0.89	-0.1
3,005,015	+		DZA65_RS13995	0.89	+0.5
3,005,015	+		DZA65_RS13995	0.89	+1.1
3,005,015	+		DZA65_RS13995	0.89	+0.5
3,005,015	+		DZA65_RS13995	0.89	+0.3
3,005,015	+		DZA65_RS13995	0.89	+0.8
3,005,015	+		DZA65_RS13995	0.89	-0.3
3,005,015	+		DZA65_RS13995	0.89	+1.0
3,005,015	+		DZA65_RS13995	0.89	+1.2
3,005,015	+		DZA65_RS13995	0.89	-0.3
3,005,015	+		DZA65_RS13995	0.89	+0.3
3,005,015	+		DZA65_RS13995	0.89	-0.5
3,005,015	+		DZA65_RS13995	0.89	+0.7
3,005,015	+		DZA65_RS13995	0.89	+0.5
3,005,015	+		DZA65_RS13995	0.89	+0.1
3,005,015	+		DZA65_RS13995	0.89	+1.1
3,005,015	+		DZA65_RS13995	0.89	+0.6
3,005,015	+		DZA65_RS13995	0.89	+0.4
3,005,015	+		DZA65_RS13995	0.89	+0.6
3,005,015	+		DZA65_RS13995	0.89	-1.1
3,005,015	+		DZA65_RS13995	0.89	-1.0
3,005,015	+		DZA65_RS13995	0.89	+0.3
3,005,015	+		DZA65_RS13995	0.89	+0.5
3,005,015	+		DZA65_RS13995	0.89	+0.5
3,005,015	+		DZA65_RS13995	0.89	+0.0
3,005,016	-		DZA65_RS13995	0.89	+0.7
3,005,016	-		DZA65_RS13995	0.89	+1.0
3,005,016	-		DZA65_RS13995	0.89	+2.1
3,005,016	-		DZA65_RS13995	0.89	+0.6
3,005,016	-		DZA65_RS13995	0.89	+0.2
3,005,016	-		DZA65_RS13995	0.89	+0.6
3,005,016	-		DZA65_RS13995	0.89	-0.1
3,005,016	-		DZA65_RS13995	0.89	+0.7
3,005,016	-		DZA65_RS13995	0.89	+0.5
3,005,016	-		DZA65_RS13995	0.89	+0.5
3,005,016	-		DZA65_RS13995	0.89	-0.7
3,005,016	-		DZA65_RS13995	0.89	+0.3
3,005,016	-		DZA65_RS13995	0.89	+2.0
3,005,016	-		DZA65_RS13995	0.89	-0.3
3,005,016	-		DZA65_RS13995	0.89	+0.8
3,005,016	-		DZA65_RS13995	0.89	+0.9
3,005,016	-		DZA65_RS13995	0.89	-0.1
3,005,016	-		DZA65_RS13995	0.89	+0.3
3,005,016	-		DZA65_RS13995	0.89	+0.8
3,005,016	-		DZA65_RS13995	0.89	-0.7
3,005,016	-		DZA65_RS13995	0.89	-0.3
3,005,016	-		DZA65_RS13995	0.89	-1.1
3,005,016	-		DZA65_RS13995	0.89	+0.3
3,005,016	-		DZA65_RS13995	0.89	-0.3
3,005,016	-		DZA65_RS13995	0.89	+0.5
3,005,016	-		DZA65_RS13995	0.89	+0.9
3,005,016	-		DZA65_RS13995	0.89	+1.3
3,005,016	-		DZA65_RS13995	0.89	+1.1
3,005,016	-		DZA65_RS13995	0.89	+0.0
3,005,016	-		DZA65_RS13995	0.89	+2.1
3,005,034	+				+1.0
3,005,035	-				+0.3
3,005,035	-				+1.3
3,005,079	+				+0.1
3,005,101	-				+1.8
3,005,113	+				-0.4
3,005,114	-				+0.4
3,005,114	-				+0.7
3,005,142	+				+0.6
3,005,142	+				+0.0
3,005,142	+				+0.0
3,005,143	-				+0.6
3,005,143	-				+1.7
3,005,143	-				+1.6
3,005,171	+				-0.7
3,005,171	+				-0.6
3,005,172	-				+0.5
3,005,195	+				-0.1
3,005,196	-				-0.8
3,005,196	-				+0.1
3,005,196	-				-0.5
3,005,198	-				+1.0
3,005,203	+				+1.0
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3,005,224	+				+1.1
3,005,224	+				+0.3
3,005,224	+				-0.7
3,005,224	+				+1.2
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3,005,224	+				+0.2
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3,005,224	+				+0.6
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3,005,225	-				+0.4
3,005,225	-				-1.1
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3,005,225	-				-0.5
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3,005,367	+		DZA65_RS14000	0.24	-1.2
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3,005,367	+		DZA65_RS14000	0.24	+0.3
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3,005,367	+		DZA65_RS14000	0.24	+1.1
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3,005,368	-		DZA65_RS14000	0.24	+1.1
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3,005,421	-		DZA65_RS14000	0.32	+1.6
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3,005,693	-		DZA65_RS14000	0.72	+1.3
3,005,693	-				-1.1
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3,005,785	-		DZA65_RS14000	0.86	+0.1
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3,005,805	+		DZA65_RS14000	0.89	+1.3
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3,005,937	+		DZA65_RS14005	0.11	-1.9
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3,006,065	+		DZA65_RS14005	0.42	+0.4
3,006,065	+		DZA65_RS14005	0.42	-0.3