Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13485

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,893,180	+		DZA65_RS13475	0.64	-1.8
2,893,180	+		DZA65_RS13475	0.64	-0.9
2,893,181	-		DZA65_RS13475	0.64	-2.8
2,893,181	-		DZA65_RS13475	0.64	-0.6
2,893,181	-		DZA65_RS13475	0.64	-2.5
2,893,219	+		DZA65_RS13475	0.69	+1.2
2,893,234	+		DZA65_RS13475	0.71	+0.1
2,893,235	-		DZA65_RS13475	0.71	-0.2
2,893,389	+				-2.8
2,893,390	-				+0.2
2,893,390	-				-0.7
2,893,407	+				-1.4
2,893,408	-				-1.5
2,893,419	+				-0.4
2,893,419	+				-2.2
2,893,419	+				-0.2
2,893,419	+				+0.2
2,893,420	-				-0.5
2,893,439	-				-0.8
2,893,444	+				+0.6
2,893,445	-				-0.2
2,893,450	+				+1.4
2,893,450	+				+0.8
2,893,453	-				-0.7
2,893,453	-				-0.8
2,893,453	-				-1.0
2,893,462	-				+0.5
2,893,500	+				+0.0
2,893,518	-				-0.2
2,893,544	+				-3.0
2,893,554	+				+0.2
2,893,560	+				-1.0
2,893,561	-				-1.0
2,893,564	-				-1.1
2,893,583	+				-0.3
2,893,583	+				-0.6
2,893,583	+				+0.0
2,893,584	-				-1.2
2,893,584	-				-0.0
2,893,631	+				-1.1
2,893,631	+				-0.6
2,893,631	+				-0.7
2,893,631	+				-0.4
2,893,632	-				-0.0
2,893,632	-				+0.1
2,893,632	-				-0.8
2,893,633	+				-0.2
2,893,633	+				+0.2
2,893,633	+				-1.1
2,893,634	-				-0.8
2,893,634	-				-0.6
2,893,641	-				-0.2
2,893,641	-				-1.8
2,893,641	-				-2.0
2,893,769	+				-0.6
2,893,770	-				-1.1
2,893,770	-				+0.4
2,893,770	-				-0.6
2,893,770	-				-0.3
2,893,770	-				-0.0
2,893,770	-				+1.4
2,893,776	-				-2.6
2,893,779	-				+0.0
2,893,779	-				-1.0
2,893,779	-				-1.4
2,893,779	-				-0.3
2,893,779	-				-1.6
2,893,825	+				-0.1
2,893,839	+				-0.8
2,893,870	-				-0.8
2,893,870	-				-0.4
2,893,870	-				+0.4
2,893,872	+				-0.1
2,893,873	-				+0.5
2,893,912	+				-0.8
2,893,912	+				-0.4
2,893,912	+				+0.2
2,893,913	-				+0.4
2,893,913	-				+0.6
2,893,916	+				+0.9
2,893,916	+				-1.0
2,893,916	+				-0.1
2,893,917	-				-0.2
2,893,917	-				+0.6
2,893,917	-				-2.6
2,893,917	-				-1.1
2,893,917	-				-0.3
2,893,920	+				-2.6
2,893,921	-				+0.1
2,893,921	-				-0.3
2,893,921	-				-0.2
2,893,921	-				+1.7
2,893,921	-				-0.7
2,893,921	-				+0.8
2,893,921	-				-0.5
2,893,924	+				-0.6
2,893,924	+				-0.2
2,893,925	-				-0.8
2,893,925	-				+1.1
2,893,937	-				+0.2
2,893,943	+				-0.0
2,893,948	-				+0.2
2,893,964	+				-1.2
2,893,970	-				+0.2
2,893,970	-				+1.4
2,893,972	-				+1.1
2,894,030	+				-0.4
2,894,072	+				+0.2
2,894,073	-				-0.1
2,894,118	+				-0.5
2,894,182	+				-0.4
2,894,197	+				-0.9
2,894,250	-		DZA65_RS13485	0.19	-0.5
2,894,261	+		DZA65_RS13485	0.22	+0.0
2,894,261	+		DZA65_RS13485	0.22	-0.6
2,894,262	-		DZA65_RS13485	0.22	+0.2
2,894,262	-		DZA65_RS13485	0.22	+1.0
2,894,269	+		DZA65_RS13485	0.23	-1.7
2,894,334	+		DZA65_RS13485	0.37	-0.7
2,894,335	-		DZA65_RS13485	0.38	-1.0
2,894,426	-		DZA65_RS13485	0.57	+1.8
2,894,448	-		DZA65_RS13485	0.62	-1.4
2,894,471	-		DZA65_RS13485	0.67	-2.4
2,894,471	-		DZA65_RS13485	0.67	-1.0
2,894,587	-				-0.8
2,894,587	-				-1.1
2,894,598	+				+1.0
2,894,599	-				+1.6
2,894,662	+				-1.2
2,894,662	+				-0.8
2,894,663	-				-0.1
2,894,663	-				+0.6
2,894,663	-				-0.1
2,894,724	-				-2.9
2,894,724	-				-2.1
2,894,724	-				+0.6
2,894,730	+				-0.6
2,894,730	+				-0.7
2,894,730	+				+1.2
2,894,730	+				-0.4
2,894,730	+				-2.8
2,894,731	-				-0.0
2,894,731	-				+0.6
2,894,731	-				+0.8
2,894,733	+				-1.9
2,894,733	+				+0.4
2,894,734	-				+1.0
2,894,734	-				+0.1
2,894,734	-				-0.6
2,894,795	+				-1.2
2,894,796	-				-0.2
2,894,796	-				+0.5
2,894,796	-				+1.2
2,894,930	+				-1.8
2,894,931	-				-0.0
2,894,947	-				+0.9
2,895,024	+		DZA65_RS13490	0.19	-1.1
2,895,048	-		DZA65_RS13490	0.22	-0.7
2,895,367	+		DZA65_RS13490	0.63	-0.2
2,895,398	+		DZA65_RS13490	0.67	+0.0
2,895,415	+		DZA65_RS13490	0.69	-0.8
2,895,415	+		DZA65_RS13490	0.69	-1.1
2,895,459	-		DZA65_RS13490	0.75	+0.8
2,895,501	+		DZA65_RS13490	0.80	-2.6
2,895,554	+		DZA65_RS13490	0.87	-0.2
2,895,555	-		DZA65_RS13490	0.87	-0.5
2,895,557	+		DZA65_RS13490	0.87	+0.9
2,895,557	+		DZA65_RS13490	0.87	+0.6
2,895,557	+		DZA65_RS13490	0.87	-1.4
2,895,557	+		DZA65_RS13490	0.87	-1.4
2,895,558	-		DZA65_RS13490	0.88	+0.1
2,895,558	-		DZA65_RS13490	0.88	-0.9
2,895,558	-		DZA65_RS13490	0.88	-0.5
2,895,558	-		DZA65_RS13490	0.88	+0.9
2,895,558	-		DZA65_RS13490	0.88	-0.4
2,895,558	-		DZA65_RS13490	0.88	-0.6
2,895,558	-		DZA65_RS13490	0.88	-0.8
2,895,558	-		DZA65_RS13490	0.88	+2.0
2,895,558	-		DZA65_RS13490	0.88	+0.6
2,895,600	+				+1.2
2,895,601	-				+1.0
2,895,601	-				+1.0