Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12280

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,623,522	+				-0.0
2,623,522	+				+0.6
2,623,538	+				+1.0
2,623,568	+				-0.8
2,623,595	+				-0.0
2,623,596	-				+0.9
2,623,613	-				-1.4
2,623,626	+				+0.2
2,623,670	+				-1.5
2,623,670	+				-1.7
2,623,670	+				+0.2
2,623,671	-				+0.1
2,623,708	+				+0.7
2,623,709	-				+0.2
2,623,716	+				-1.6
2,623,717	-				+2.0
2,623,717	-				-0.3
2,623,717	-				+0.2
2,623,717	-				-1.3
2,623,749	+				-0.3
2,623,758	-				-1.2
2,623,769	-				+0.1
2,623,803	-				-2.1
2,623,803	-				-0.2
2,623,851	+		DZA65_RS12270	0.23	+1.5
2,623,870	-		DZA65_RS12270	0.29	-0.2
2,623,870	-		DZA65_RS12270	0.29	-0.3
2,623,913	+		DZA65_RS12270	0.43	-0.5
2,623,914	-		DZA65_RS12270	0.43	+0.7
2,623,939	+		DZA65_RS12270	0.52	-1.6
2,623,943	-		DZA65_RS12270	0.53	-1.0
2,623,946	-		DZA65_RS12270	0.54	-0.5
2,623,953	-		DZA65_RS12270	0.56	-0.2
2,623,993	+		DZA65_RS12270	0.69	+0.7
2,624,004	-		DZA65_RS12270	0.73	-0.8
2,624,004	-		DZA65_RS12270	0.73	-1.8
2,624,011	+		DZA65_RS12270	0.75	-0.5
2,624,012	-		DZA65_RS12270	0.75	-0.7
2,624,215	-		DZA65_RS12275	0.73	+0.3
2,624,229	-		DZA65_RS12275	0.81	-0.2
2,624,251	+				-0.6
2,624,251	+				+0.2
2,624,252	-				+1.5
2,624,252	-				+0.5
2,624,365	+				+0.2
2,624,366	-				+0.4
2,624,372	+				-0.2
2,624,447	-				-1.6
2,624,479	+				+1.1
2,624,479	+				+0.4
2,624,479	+				+0.8
2,624,480	-				+0.6
2,624,480	-				+0.5
2,624,480	-				+2.0
2,624,480	-				-1.8
2,624,487	+				-1.6
2,624,487	+				+0.4
2,624,487	+				+0.9
2,624,487	+				-0.2
2,624,488	-				-0.4
2,624,498	-				+0.2
2,624,628	-		DZA65_RS12280	0.18	+1.1
2,624,628	-		DZA65_RS12280	0.18	+1.4
2,624,680	+		DZA65_RS12280	0.24	+1.8
2,624,860	-		DZA65_RS12280	0.46	-0.4
2,624,985	+		DZA65_RS12280	0.61	+0.6
2,624,986	-		DZA65_RS12280	0.61	-0.6
2,625,026	+		DZA65_RS12280	0.66	+0.4
2,625,026	+		DZA65_RS12280	0.66	-1.4
2,625,027	-		DZA65_RS12280	0.66	-0.4
2,625,054	-		DZA65_RS12280	0.69	-0.6
2,625,209	+		DZA65_RS12280	0.88	+0.4
2,625,210	-		DZA65_RS12280	0.88	+0.4
2,625,210	-		DZA65_RS12280	0.88	+0.5
2,625,210	-		DZA65_RS12280	0.88	-0.8
2,625,236	+				+0.4
2,625,236	+				+0.2
2,625,236	+				+0.3
2,625,236	+				-1.0
2,625,237	-				-0.0
2,625,309	-				-0.4
2,625,309	-				+1.4
2,625,369	+		DZA65_RS12285	0.21	-0.1
2,625,509	+				+0.5
2,625,509	+				-2.8
2,625,509	+				-0.0
2,625,510	-				+0.7
2,625,510	-				-0.1
2,625,511	+				+0.6
2,625,581	-				-0.2
2,625,609	+				-0.2
2,625,610	-				+0.1
2,625,660	-				-0.1
2,625,678	+				+0.7
2,625,678	+				+0.2
2,625,678	+				+1.5
2,625,678	+				+1.2
2,625,679	-				-2.1
2,625,679	-				+0.1
2,625,679	-				-0.4
2,625,679	-				+0.7
2,625,679	-				-0.0
2,625,679	-				-1.0
2,625,691	-				-0.2
2,625,691	-				-0.4
2,625,691	-				-1.1
2,625,710	-				+1.0
2,625,710	-				+0.2
2,625,723	-				-0.2
2,625,758	+				+0.3
2,625,759	-				+0.6
2,625,759	-				+1.1
2,625,759	-				+0.0
2,625,764	+				-0.8
2,625,764	+				-0.4
2,625,764	+				+0.5
2,625,764	+				-0.4
2,625,764	+				+0.2
2,625,770	+				-2.1
2,625,770	+				-0.2
2,625,782	+				-0.1
2,625,782	+				-0.7
2,625,782	+				+0.6
2,625,782	+				-0.3
2,625,782	+				-2.5
2,625,782	+				+0.2
2,625,783	-				-0.4
2,625,783	-				+0.2
2,625,896	-				-0.7
2,626,146	+		DZA65_RS12290	0.28	-1.0
2,626,146	+		DZA65_RS12290	0.28	-1.0
2,626,147	-		DZA65_RS12290	0.28	-0.6
2,626,149	+		DZA65_RS12290	0.28	+1.1
2,626,150	-		DZA65_RS12290	0.28	-0.0
2,626,150	-		DZA65_RS12290	0.28	-0.4
2,626,150	-		DZA65_RS12290	0.28	+0.5
2,626,158	+		DZA65_RS12290	0.29	-0.5
2,626,158	+		DZA65_RS12290	0.29	+0.3
2,626,197	+		DZA65_RS12290	0.32	-0.5
2,626,197	+		DZA65_RS12290	0.32	-0.2
2,626,197	+		DZA65_RS12290	0.32	-0.5
2,626,198	-		DZA65_RS12290	0.32	+0.8
2,626,198	-		DZA65_RS12290	0.32	+0.8
2,626,198	-		DZA65_RS12290	0.32	-0.3