Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09990 and DZA65_RS09995 are separated by 113 nucleotides DZA65_RS09995 and DZA65_RS10000 are separated by 214 nucleotides
DZA65_RS09990: DZA65_RS09990 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 2,114,395 to 2,115,480
_RS09990
DZA65_RS09995: DZA65_RS09995 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,115,594 to 2,116,883
_RS09995
DZA65_RS10000: DZA65_RS10000 - (d)CMP kinase, at 2,117,098 to 2,117,784
_RS10000
Position (kb)
2115
2116
2117 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2114.682 kb on + strand, within DZA65_RS09990 at 2114.827 kb on + strand, within DZA65_RS09990 at 2114.968 kb on + strand, within DZA65_RS09990 at 2115.073 kb on + strand, within DZA65_RS09990 at 2115.220 kb on + strand, within DZA65_RS09990 at 2115.220 kb on + strand, within DZA65_RS09990 at 2115.406 kb on + strand at 2115.481 kb on + strand at 2115.485 kb on + strand at 2115.503 kb on + strand at 2115.503 kb on + strand at 2115.503 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.507 kb on + strand at 2115.508 kb on - strand at 2115.509 kb on + strand at 2115.509 kb on + strand at 2116.907 kb on + strand at 2116.907 kb on + strand at 2116.908 kb on - strand at 2116.908 kb on - strand at 2116.921 kb on - strand at 2116.950 kb on + strand at 2116.950 kb on + strand at 2116.950 kb on + strand at 2116.951 kb on - strand at 2116.957 kb on - strand at 2116.958 kb on + strand at 2116.958 kb on + strand at 2116.959 kb on - strand at 2116.959 kb on - strand at 2116.975 kb on + strand at 2116.975 kb on + strand at 2116.976 kb on - strand at 2116.999 kb on + strand at 2116.999 kb on + strand at 2116.999 kb on + strand at 2117.000 kb on - strand at 2117.000 kb on - strand at 2117.000 kb on - strand at 2117.035 kb on + strand at 2117.035 kb on + strand at 2117.035 kb on + strand at 2117.036 kb on - strand at 2117.045 kb on + strand at 2117.046 kb on - strand at 2117.046 kb on - strand at 2117.050 kb on + strand at 2117.050 kb on + strand at 2117.050 kb on + strand at 2117.050 kb on + strand at 2117.051 kb on - strand at 2117.051 kb on - strand at 2117.057 kb on + strand at 2117.057 kb on + strand at 2117.057 kb on + strand at 2117.085 kb on + strand at 2117.085 kb on + strand at 2117.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,114,682 + DZA65_RS09990 0.26 -3.9 2,114,827 + DZA65_RS09990 0.40 -2.6 2,114,968 + DZA65_RS09990 0.53 -1.4 2,115,073 + DZA65_RS09990 0.62 +0.0 2,115,220 + DZA65_RS09990 0.76 -1.8 2,115,220 + DZA65_RS09990 0.76 -0.1 2,115,406 + -3.6 2,115,481 + -1.0 2,115,485 + -0.4 2,115,503 + +0.1 2,115,503 + -0.2 2,115,503 + +1.0 2,115,507 + +0.6 2,115,507 + +0.2 2,115,507 + +0.1 2,115,507 + -1.0 2,115,507 + -0.8 2,115,507 + -1.0 2,115,508 - -1.1 2,115,509 + -0.1 2,115,509 + +0.5 2,116,907 + +0.4 2,116,907 + -2.5 2,116,908 - -0.9 2,116,908 - -0.3 2,116,921 - -1.4 2,116,950 + -0.5 2,116,950 + +0.6 2,116,950 + +0.2 2,116,951 - +0.1 2,116,957 - +1.1 2,116,958 + +0.1 2,116,958 + +0.3 2,116,959 - +0.9 2,116,959 - -2.4 2,116,975 + +1.0 2,116,975 + -1.8 2,116,976 - -0.3 2,116,999 + +0.5 2,116,999 + +0.7 2,116,999 + +0.1 2,117,000 - -0.4 2,117,000 - -0.2 2,117,000 - -0.2 2,117,035 + -0.1 2,117,035 + -0.4 2,117,035 + -0.9 2,117,036 - -0.2 2,117,045 + +0.9 2,117,046 - -1.7 2,117,046 - +0.2 2,117,050 + -0.6 2,117,050 + -0.4 2,117,050 + +0.0 2,117,050 + +1.0 2,117,051 - -2.6 2,117,051 - -0.7 2,117,057 + -0.5 2,117,057 + +0.4 2,117,057 + +0.2 2,117,085 + -1.4 2,117,085 + -0.6 2,117,795 + -0.1
Or see this region's nucleotide sequence